Case 2 (A.1.NmC1): MH030053.1
| Target: 377 samples | Number of changes: 1423 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1336-1337 | BC BR coord: 9645 - 9646 |
| Direction L1: >> | Initial region span: 1-1336,1337-1423 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.65e-202 | Rec. model vs L2: 7.12e-11 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1336 |
188.875633 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1422 |
167.303080 |
156.656844 |
2372.686312 |
1.016323e-14 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1337 |
10.115561 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C,
2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C,
2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG,
2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C,
2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G,
2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C,
2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C,
2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C,
2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G,
3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T,
3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C,
3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C,
3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G,
3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G,
3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C,
3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C,
4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C,
4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T,
4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T,
4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C,
4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A, 4667_T|C, 4669_G|A, 4678_C|T,
4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C,
4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G,
4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T,
5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G,
5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T,
5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5290_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C,
5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C,
5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT,
5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C,
5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G,
5974_T|C, 5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T,
6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A,
6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C,
6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C,
6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G,
6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G,
6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A,
6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G,
7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T,
7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G,
7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A,
7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC,
7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T,
7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A,
7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G,
8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G,
8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C,
8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A,
8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T,
8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8569_C|A,
8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A,
8704_T|C, 8707_A|G, 8743_G|A, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G,
8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C,
9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A,
9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A,
9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G,
9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C,
9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_GG|TA, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9778_C|T,
9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G,
9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG,
10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T,
10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A,
10281_A|G, 10297_A|G, 10303_C|T
Case 2 (A.1.NmC1): MZ604862.1
| Target: 377 samples | Number of changes: 1429 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1381-1382 | BC BR coord: 9963 - 9964 |
| Direction L1: >> | Initial region span: 1-1381,1382-1429 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.30e-217 | Rec. model vs L2: 5.55e-07 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1381 |
186.252811 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1428 |
169.854422 |
160.105025 |
2449.78995 |
4.397434e-12 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1382 |
9.629772 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 80_A|G, 108_C|T, 118_C|A, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G,
346_A|G, 352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C,
473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C,
628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T,
781_T|C, 784_G|A, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G,
910_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G,
1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A,
1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G,
1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T,
1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T,
1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T,
1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T,
1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A,
1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C,
2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T,
2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A,
2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A,
2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G,
2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T,
2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A,
2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_AT|GC, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C,
3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G,
3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G,
3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A,
3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G,
3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T,
3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T,
3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G,
3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T,
4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C,
4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T,
4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T,
4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T,
4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A,
4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A, 4667_T|C, 4669_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C,
4753_C|T, 4756_G|A, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A,
4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T,
4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T,
5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T,
5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5290_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C,
5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T,
5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C,
5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A,
5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C,
5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T,
6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C,
6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C,
6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A,
6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6525, 6527_.|C, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G,
6613_A|T, 6619_T|C, 6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T,
6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T,
6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A,
7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C,
7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G,
7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T,
7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT,
7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C,
7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T,
7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A,
7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A,
8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T,
8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T,
8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A,
8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G,
8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT,
8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT,
8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G,
8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T,
9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T,
9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C,
9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C,
9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A,
9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG,
9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9964_9972, 9976_9984, 9987, 9990_9991, 10003_C|A,
10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C,
10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C,
10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C
Case 2 (A.1.NmC1): OQ714242.1
| Target: 377 samples | Number of changes: 938 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 279-280, 441-442 | BC BR coord: 2172 - 2173, 6705 - 6706 |
| Direction L1: << | Initial region span: 1-279,280-288,442-938 | Gap history (edge excluded): 279-442 -> 288-442 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.75e-24 | |
| Rec. model vs L1: 8.09e-37 | Rec. model vs L2: 1.78e-77 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
279 |
27.418853 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
289 |
10.077917 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
280 |
-0.128576 |
-61.648353 |
1427.296706 |
2.018900e-30 |
|
|
|
| A.1.NmC1 |
0 |
280 |
-0.168208 |
-42.219933 |
1388.439867 |
5.539322e-22 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
442 |
61.036418 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
476 |
6.481759 |
33.397997 |
1553.204005 |
1.379943e-24 |
|
|
|
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C,
2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C,
2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2371_C|T, 2380_A|G, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T,
3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G,
3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C,
3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T,
4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A,
4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C,
4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 6124_T|A, 6127_A|G,
6142_T|A, 6154_A|G, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A,
6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G,
6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A,
6940_C|T, 6942_TA|CG, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T,
7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T,
7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C,
7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G,
7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G,
7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC,
7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C,
7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T,
8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T,
8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T,
8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G,
8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA,
8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C,
8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T,
8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T,
8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G,
9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C,
9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A,
9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T,
9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C,
9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T,
9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T,
9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C,
10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C,
10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G,
10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C, 10330_C|T
Case 2 (A.1.NmC1): ON022368.1
| Target: 377 samples | Number of changes: 1369 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1268-1269 | BC BR coord: 9558 - 9559 |
| Direction L1: >> | Initial region span: 1-1267,1272-1369 | Gap history (edge excluded): 1267-1272 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.73e-214 | Rec. model vs L2: 6.84e+01 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1267 |
156.623302 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1369 |
154.372598 |
143.595239 |
2378.809523 |
0.000003 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1272 |
11.824012 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G,
1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T,
1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C,
1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T,
1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G,
2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A,
2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T,
2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C,
2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C,
2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T,
2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A,
2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A,
2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G,
3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C,
3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C,
3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C,
3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T,
3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G,
3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C,
3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T,
4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A,
4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C,
4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A,
4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C,
4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A, 4667_T|C, 4669_G|A,
4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C,
4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A,
4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C,
5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A,
5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C,
5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5290_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G,
5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C,
5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A,
6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C,
6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G,
6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6502_A|G,
6508_AA|GG, 6517_C|T, 6523_T|C, 6526_GT|TC, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_AC|GT, 6625_A|G,
6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T,
6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|C, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T,
6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C,
7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A,
7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T,
7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C,
7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A,
7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T,
7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G,
7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7936_CA|TC, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G,
8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A,
8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G,
8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T,
8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T,
8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T,
8560_C|T, 8566_T|C, 8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G,
8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C,
8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A,
9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C,
9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG,
9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T,
9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9558_.|C, 9560_TC|CG, 9563_G|C, 9566, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G,
9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C,
9762_A|G, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T,
9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9952_C|T, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C,
10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C,
10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G,
10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 2 (A.1.NmC1): OP508590.1
| Target: 377 samples | Number of changes: 850 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 55-56, 96-97 | BC BR coord: 648 - 649, 1914 - 1915 |
| Direction L1: << | Initial region span: 1-55,56-96,97-850 | Gap history (edge excluded): 55-97 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.71e-07 | |
| Rec. model vs L1: 9.21e-08 | Rec. model vs L2: 1.80e-40 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
55 |
6.27497 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
56 |
6.531544 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
97 |
-0.049142 |
-8.589761 |
381.179521 |
2.713110e-07 |
|
|
|
| A.1.NmC2 |
0 |
97 |
-0.213067 |
-14.695578 |
393.391156 |
6.054797e-10 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
97 |
48.230111 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G,
370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A,
514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C,
784_G|A, 802_A|G, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A,
1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1915_C|A, 1926_TT|CA,
1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C,
2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T,
2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C,
2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C,
2524_C|T, 2527_T|A, 2545_G|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T,
2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A,
2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A,
2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G,
3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C,
3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G,
3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G,
3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G,
3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A,
4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4273_GA|AG, 4289_C|A,
4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G,
5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5662_A|C, 5668_C|T,
5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G,
6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A,
6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG,
6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T,
6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G,
6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A,
6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G,
7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C,
7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A,
7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C,
7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 8023_A|G, 8030_A|G, 8035_C|T,
8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C,
8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T,
8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A,
8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A,
8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A,
8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G,
8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A,
9100_G|A, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A,
9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A,
9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A,
9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G,
10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA,
10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C,
10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C, 10330_C|T
Case 2 (A.1.NmC1): OP508602.1
| Target: 377 samples | Number of changes: 863 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 846-847, 848-849 | BC BR coord: 9777 - 9778, 10065 - 10066 |
| Direction L1: >> | Initial region span: 1-846,847-848,849-863 | Gap history (edge excluded): 846-849 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 4.61e-03 | |
| Rec. model vs L1: 4.11e-03 | Rec. model vs L2: 3.41e-61 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
846 |
64.41573 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
847 |
1.945442 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
849 |
-0.138315 |
-3.435066 |
84.870132 |
0.004608 |
* |
|
|
| A.1.NmC2 |
0 |
849 |
-0.152168 |
-4.992148 |
87.984296 |
0.000973 |
* |
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
849 |
0.394383 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T, 356_G|A, 358_T|C, 361_A|G,
367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G,
511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T,
682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G,
1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T,
1591_C|T, 1593_G|A, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C,
2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G,
2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2242_T|C, 2248_G|A, 2257_T|A, 2260_G|A,
2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C,
2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2545_G|A, 2548_C|T,
2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C,
2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2827_C|T, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A,
2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C,
3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G,
3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A,
3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C,
4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T,
4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 5182_G|A, 5194_C|T,
5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5290_T|C, 5296_CC|TT, 5299_G|A,
5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G,
5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T,
5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T,
6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G,
6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C,
6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6526_GT|TC, 6529_CC|TT,
6532_C|G, 6547_C|T, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G,
6703_C|T, 6706_C|T, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6764_C|T, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T,
6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T,
6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T,
7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A,
7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G,
7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7642_C|A,
7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C,
7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 8023_A|G, 8030_A|G,
8035_C|T, 8037_G|A, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A,
8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T,
8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T,
8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T,
8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T,
8560_C|T, 8566_T|C, 8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G,
8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C,
8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A,
9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T,
9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C,
9604_T|C, 9610_A|G, 9613_G|T, 9624_CG|TA, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G,
9772_C|T, 9946_T|C, 9955_A|G, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10117_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G,
10177_A|G
Case 2 (A.1.NmC1): OP508604.1
| Target: 377 samples | Number of changes: 620 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 123-124, 248-249 | BC BR coord: 1260 - 1261, 6022 - 6023 |
| Direction L1: << | Initial region span: 1-123,124-248,249-620 | Gap history (edge excluded): 123-249 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.42e-24 | |
| Rec. model vs L1: 1.26e-40 | Rec. model vs L2: 2.58e-40 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
123 |
13.567488 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
249 |
12.922443 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
124 |
-0.104767 |
-45.459141 |
1482.918281 |
4.424744e-26 |
|
|
|
| A.1.NmC2 |
0 |
124 |
-0.132300 |
-102.654967 |
1597.309935 |
6.403468e-51 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
249 |
38.333056 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T,
376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T,
517_A|G, 523_G|T, 535_C|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A,
691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A,
961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1045_CC|TT, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2242_T|C, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A,
2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T,
2704_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T,
2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C,
3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA,
4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T,
5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|C, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 6023_A|G, 6025_T|C,
6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A,
6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6388_A|G, 6406_GT|TG,
6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T,
6523_T|C, 6526_GT|TC, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T,
6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G,
6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A,
6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T,
7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T,
7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G,
8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G,
8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A,
8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC,
8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G,
8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T,
8941_G|A, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T,
9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT,
9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A,
9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A,
9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG,
10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G
Case 2 (A.1.NmC1): OP508608.1
| Target: 377 samples | Number of changes: 694 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 272-273, 302-303 | BC BR coord: 3141 - 3142, 5181 - 5182 |
| Direction L1: << | Initial region span: 1-272,273-302,303-694 | Gap history (edge excluded): 272-303 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 3.87e-15 | |
| Rec. model vs L1: 2.61e-25 | Rec. model vs L2: 2.76e-45 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
272 |
19.795779 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
273 |
7.380307 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
303 |
-0.079124 |
-27.807442 |
677.614884 |
5.240210e-16 |
|
|
|
| A.1.NmC2 |
0 |
303 |
-0.133633 |
-53.102423 |
728.204847 |
5.418383e-27 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
303 |
29.974643 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 327_A|G, 346_A|G, 352_G|A, 354_C|T, 356_G|A, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT,
455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T,
610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C,
766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C,
1045_CC|TT, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA,
1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G,
1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C,
1444_G|A, 1468_A|G, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C,
2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C,
2233_CA|TG, 2236_C|T, 2239_C|T, 2242_T|C, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G,
2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A,
2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2827_C|T, 2833_G|A, 2836_G|A,
2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C,
3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C,
3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A,
4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 5182_G|A, 5194_C|T,
5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5290_T|C, 5296_CC|TT, 5299_G|A,
5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5602_A|T, 5605_C|T, 5614_C|T,
5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T,
5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C,
6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C,
6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A,
6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6526_GT|TC, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A,
6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6724_C|T, 6745_T|C,
6754_C|T, 6757_TG|CA, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T,
6970_T|C, 6976_G|A, 6980_C|T, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7447_C|T,
7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C,
8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A,
8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T,
8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T,
8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8749_T|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 9232_C|T, 9244_C|A,
9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9490_A|G, 9493_C|T, 9497_T|C,
9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T,
9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9624_CG|TA, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C,
9762_A|G, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|C, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A,
10096_A|G, 10104_C|T, 10111_C|T, 10117_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G,
10210_C|T, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G,
10297_A|G
Case 2 (A.1.NmC1): OP508706.1
| Target: 377 samples | Number of changes: 1455 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1435-1436 | BC BR coord: 10360 - 10361 |
| Direction L1: >> | Initial region span: 1-1435,1452-1455 | Gap history (edge excluded): 1435-1452 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 7.11e-190 | Rec. model vs L2: 8.76e+04 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1435 |
169.471333 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1428 |
167.220530 |
156.140227 |
2591.719546 |
0.000002 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1452 |
3.614437 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 195_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A,
354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C,
493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T,
664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G,
823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C,
943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A,
1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA,
1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C,
1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A,
1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C,
2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C,
2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG,
2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C,
2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2395_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C,
2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2545_G|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A,
2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T,
2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A,
2947_A|T, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C,
3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G,
3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG,
3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T,
3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T,
3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G,
3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_AG|CA, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C,
3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T,
4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4147_T|C, 4150_A|C, 4153_TC|CA,
4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A,
4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G,
4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4507_C|T, 4519_T|A, 4523_C|T, 4525_GC|AT, 4531_C|T, 4540_G|C,
4544_C|T, 4549_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A,
4667_T|C, 4669_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4762_C|T, 4765_G|A,
4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A,
4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T,
4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G,
5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5167_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A,
5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5290_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C,
5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A,
5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C,
5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T,
5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5809_T|A, 5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T,
5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5992_C|T, 5995_A|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C,
6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G,
6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C,
6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T,
6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6526_GT|TC, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C,
6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6652_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA,
6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T,
6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C,
7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T,
7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T,
7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T,
7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C,
7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C,
7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C,
7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C,
7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C,
8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A,
8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C,
8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A,
8455_G|T, 8458_C|T, 8460_AA|GG, 8463_A|C, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8519_T|C, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T,
8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T,
8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A,
8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010,
9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC,
9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG,
9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C,
9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A,
9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G,
9754_T|C, 9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G,
9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G,
10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA,
10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C,
10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C, 10330_C|T, 10336_A|G, 10338_TG|CC, 10348_T|C, 10351_C|T, 10355_A|G, 10475_A|T, 10521_TG|CA,
10528_G|C, 10533_A|G, 10535_T|A, 10549_C|A, 10553_A|G, 10555_AC|GT, 10558_A|G, 10562_T|C, 10605_A|C, 10607_C|T, 10614_T|C, 10635_G|A, 10639_C|T, 10647_C|T, 10658_AG|CC, 10662_CG|AT,
10669_T|C, 10703_C|T
Case 2 (A.1.NmC1): OP508626.1
| Target: 377 samples | Number of changes: 756 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 281-282, 314-315 | BC BR coord: 3357 - 3358, 5181 - 5182 |
| Direction L1: << | Initial region span: 1-281,282-314,315-756 | Gap history (edge excluded): 281-315 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 9.24e-13 | |
| Rec. model vs L1: 1.57e-22 | Rec. model vs L2: 2.80e-50 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
281 |
19.437666 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
315 |
5.405617 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
282 |
-0.079646 |
-24.302178 |
608.604356 |
1.256847e-13 |
|
|
|
| A.1.NmC2 |
0 |
282 |
-0.163206 |
-57.928626 |
675.857251 |
3.118595e-28 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
315 |
45.925319 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G,
370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A,
514_C|T, 517_A|G, 523_G|T, 535_C|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T,
682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G,
2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG,
2236_C|T, 2239_C|T, 2242_T|C, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA,
2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T,
2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A,
2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C,
3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G,
3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G,
3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C,
3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3970_G|C, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C,
4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G,
5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5290_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A,
5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G,
5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5701_T|A, 5713_T|C,
5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 6023_A|G, 6025_T|C,
6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A,
6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6406_GT|TG, 6409_T|C,
6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C,
6526_GT|TC, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T, 6664_A|G,
6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G,
6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A,
6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G,
7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA,
8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8111_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G,
8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C,
8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG,
8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C,
8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T,
8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C,
8956_GAA|ACG, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT,
9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C,
9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T,
9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T,
9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG,
10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G
Case 2 (A.1.NmC1): OP508628.1
| Target: 377 samples | Number of changes: 774 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 712-713, 730-731 | BC BR coord: 8953 - 8954, 9572 - 9573 |
| Direction L1: >> | Initial region span: 1-712,713-730,731-774 | Gap history (edge excluded): 712-731 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.43e-04 | |
| Rec. model vs L1: 1.93e-04 | Rec. model vs L2: 5.64e-31 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
712 |
44.096877 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
43 |
-0.902677 |
-53.160625 |
2814.32125 |
1.815133e-43 |
|
|
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
713 |
3.366131 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
731 |
-0.113550 |
-5.486271 |
172.972541 |
0.000143 |
* |
|
|
| A.1.NmC2 |
0 |
731 |
-0.128175 |
-7.902825 |
177.805650 |
0.000013 |
* |
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
731 |
1.159207 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G,
370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A,
514_C|T, 517_A|G, 523_G|T, 535_C|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T,
682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1045_CC|TT, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A,
1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA,
1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C,
1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A,
1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1915_C|A, 1926_TT|CA,
1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C,
2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T,
2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2242_T|C, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A,
2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C,
2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2545_G|A, 2548_C|T, 2863_A|G, 2878_A|G, 2881_C|T,
2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T,
3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A,
3127_G|A, 3133_A|G, 3142_T|C, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|T, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T,
3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA,
4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T,
5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C,
5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T,
6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C,
6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A,
6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6526_GT|TC, 6529_CC|TT, 6532_C|G,
6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G,
6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G,
6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T,
7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7231_C|T,
7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G,
7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A,
7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T,
8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A,
8169_A|G, 8188_A|G, 8203_A|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T,
8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T,
8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C,
8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G,
8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 9232_C|T, 9235_G|A, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T,
9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C,
9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9778_C|T,
9787_C|T, 9946_T|C, 9955_A|G, 9970_A|G, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G,
10177_A|G
Case 2 (A.1.NmC1): OP508681.1
| Target: 377 samples | Number of changes: 1435 | |
| BC: A.1.NmC1 + A.1.NmC2 | BC BR: 1427-1428 | BC BR coord: 10523 - 10524 |
| Direction L1: >> | Initial region span: 1-1425,1428-1435 | Gap history (edge excluded): 1425-1428 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.03e+01 | Rec. model vs L2: 1.42e-221 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1425 |
174.621039 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
1425 |
132.103559 |
72.399198 |
2799.201604 |
7.856405e-45 |
|
* |
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1428 |
10.647853 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 195_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A,
354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C,
493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 535_C|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A,
655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A,
802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T,
934_G|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1045_CC|TT, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C,
1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G,
1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C,
1352_T|C, 1354_G|A, 1375_A|G, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT,
1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A,
1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C,
1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G,
1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G,
1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G,
2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG,
2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2242_T|C, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G,
2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A,
2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2545_G|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G,
2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G,
2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A,
2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G,
3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C,
3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A,
3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A,
3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C,
3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G,
3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3681_TG|CT, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C,
3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C,
3901_C|T, 3913_A|G, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3979_T|C, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA,
4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4089_T|A, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G,
4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A,
4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T,
4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A,
4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A,
4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A, 4667_T|C, 4669_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C,
4753_C|T, 4756_G|A, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A,
4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T,
4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A,
5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C,
5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5290_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G,
5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C,
5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G,
5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A,
5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G,
5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T,
6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G,
6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T,
6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T,
6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6526_GT|TC, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C,
6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T,
6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A,
6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T,
7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C,
7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T,
7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T,
7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C,
7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7717_T|C, 7721_A|C, 7726_C|A, 7744_T|C,
7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A,
7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G,
7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G,
8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT,
8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G,
8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A,
8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A,
8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C,
8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G,
8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A,
9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C,
9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T,
9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT,
9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A,
9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A,
9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G,
9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A,
10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C,
10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C,
10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10475_A|T, 10521_TG|CA, 10528_G|C, 10533_A|G, 10535_T|A, 10549_C|A, 10553_A|G, 10555_AC|GT, 10558_A|G, 10562_T|C
Case 2 (A.1.NmC1): OP508646.1
| Target: 377 samples | Number of changes: 759 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 123-124, 290-291 | BC BR coord: 1422 - 1423, 5010 - 5011 |
| Direction L1: << | Initial region span: 1-123,124-152,291-759 | Gap history (edge excluded): 123-291 -> 152-291 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 9.10e-09 | |
| Rec. model vs L1: 6.37e-20 | Rec. model vs L2: 3.08e-45 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
123 |
11.348402 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
153 |
7.006632 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
124 |
-0.102398 |
-20.187251 |
1108.374503 |
3.364454e-09 |
|
|
|
| A.1.NmC2 |
0 |
124 |
-0.126798 |
-49.480232 |
1166.960463 |
6.371737e-22 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
291 |
46.834624 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G,
370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A,
514_C|T, 517_A|G, 523_G|T, 535_C|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T,
682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 1102_C|A, 1111_G|A, 1117_A|T,
1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A,
1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G,
1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G,
2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C,
2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G,
3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A,
3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A,
3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G,
3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A,
3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C,
3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA,
4066_C|T, 4081_T|C, 4087_T|C, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5104_G|A, 5113_C|A, 5116_A|G,
5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T,
5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5290_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C,
5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C,
6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G,
6613_A|T, 6619_T|C, 6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6869_G|A, 6874_A|T, 6876_C|T,
6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T,
7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C,
7141_A|G, 7144_C|T, 7156_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A,
7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G,
7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C,
7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G,
8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T,
8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G,
8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T,
8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G,
8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T,
8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G,
8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A,
9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9454_A|G, 9463_T|C, 9466_TC|CT,
9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A,
9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A,
9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C,
9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G,
10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C,
10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A
Case 2 (A.1.NmC1): OP508659.1
| Target: 377 samples | Number of changes: 874 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 162-163, 314-315 | BC BR coord: 1605 - 1606, 5010 - 5011 |
| Direction L1: << | Initial region span: 1-162,163-237,315-874 | Gap history (edge excluded): 162-315 -> 237-315 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.31e-08 | |
| Rec. model vs L1: 1.28e-19 | Rec. model vs L2: 4.60e-66 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
162 |
13.004424 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
238 |
5.637665 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
191 |
-0.063914 |
-19.294106 |
1054.588211 |
4.822372e-09 |
|
|
|
| A.1.NmC2 |
0 |
163 |
-0.142154 |
-51.778874 |
1119.557748 |
3.760144e-23 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
315 |
68.57731 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 195_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A,
354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 535_C|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T,
664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 799_A|G,
802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T,
934_G|C, 943_A|G, 946_G|A, 1094_T|C, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T,
1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C,
1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T,
1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C,
2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2833_G|A, 2836_G|A, 2863_A|G,
2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|T, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C,
3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G,
3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G,
3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C,
4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4210_A|T, 4219_A|C, 4228_GC|CT,
4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A,
4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A,
5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T,
5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5290_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T,
5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C,
5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5992_C|T, 5995_A|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A,
6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C,
6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6439_G|A, 6442_A|G, 6451_AG|GA,
6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6526_GT|TC, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G,
6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T,
6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A,
6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT,
7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G,
7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G,
7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G,
7552_C|G, 7571_A|C, 7580_C|T, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A,
7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7738_G|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A,
7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC,
8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G,
8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G,
8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C,
8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_A|C, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG,
8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C,
8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T,
8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C,
8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9232_C|T, 9244_C|A,
9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T,
9397_A|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9625_G|A, 9637_C|T, 9646_G|T,
9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T,
9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A,
10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T,
10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 2 (A.1.NmC1): OP508704.1
| Target: 377 samples | Number of changes: 1431 | |
| BC: A.1.NmC1 + A.1.NmC2 | BC BR: 1423-1424 | BC BR coord: 10523 - 10524 |
| Direction L1: >> | Initial region span: 1-1421,1424-1431 | Gap history (edge excluded): 1421-1424 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.04e+01 | Rec. model vs L2: 5.95e-226 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1421 |
177.405871 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
1421 |
130.072455 |
70.577648 |
2798.844703 |
7.289970e-47 |
|
* |
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1424 |
10.647853 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 195_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A,
354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 535_C|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T,
664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G,
823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C,
943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1045_CC|TT, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
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9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A,
9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A,
9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G,
9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G,
9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T,
9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A,
9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G,
10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T,
10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G,
10297_A|G, 10475_A|T, 10521_TG|CA, 10528_G|C, 10533_A|G, 10535_T|A, 10549_C|A, 10553_A|G, 10555_AC|GT, 10558_A|G, 10562_T|C
Case 2 (A.1.NmC1): OP508678.1
| Target: 377 samples | Number of changes: 1440 | |
| BC: A.1.NmC1 + A.1.NmC2 | BC BR: 1424-1425 | BC BR coord: 10523 - 10524 |
| Direction L1: >> | Initial region span: 1-1422,1425-1440 | Gap history (edge excluded): 1422-1425 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 7.10e-06 | Rec. model vs L2: 1.82e-223 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1422 |
176.000441 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
1422 |
130.628159 |
71.47849 |
2801.043019 |
6.745761e-46 |
|
* |
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1425 |
18.697316 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 195_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A,
354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C,
493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 535_C|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A,
655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 700_C|T, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C,
784_G|A, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G,
931_C|T, 934_G|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1045_CC|TT, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C,
1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T,
1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T,
1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT,
1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A,
1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C,
1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G,
1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G,
1981_A|C, 1984_T|C, 1993_T|C, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T,
2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T,
2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2242_T|C, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T,
2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|C, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A,
2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2545_G|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2626_T|C,
2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A,
2761_A|G, 2770_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A,
2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G,
3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C,
3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A,
3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A,
3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C,
3521_G|T, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A,
3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C,
3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C,
3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C,
4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T,
4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A,
4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA,
4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_CTGC|TCAT, 4531_C|T,
4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C,
4663_C|A, 4667_T|C, 4669_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4762_C|T,
4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A,
4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T,
4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G,
5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A,
5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5290_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T,
5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5443_C|A, 5452_G|A, 5458_A|G,
5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5602_A|T, 5605_C|T, 5614_C|T,
5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T,
5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A,
5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T,
6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T,
6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C,
6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C,
6526_GT|TC, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_TG|CA, 6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T, 6664_A|G,
6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G,
6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A,
6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G,
7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T,
7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G,
7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A,
7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC,
7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T,
7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A,
7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G,
8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G,
8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C,
8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A,
8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T,
8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8569_C|A,
8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A,
8704_T|C, 8707_A|G, 8743_G|A, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G,
8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C,
9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A,
9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A,
9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G,
9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G,
9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T,
9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A,
9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G,
10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T,
10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G,
10297_A|G, 10309_C|T, 10475_A|T, 10521_TG|CA, 10528_G|C, 10533_A|G, 10535_T|A, 10549_C|A, 10553_A|G, 10555_AC|GT, 10558_A|G, 10562_T|C, 10605_A|C, 10607_C|T, 10614_T|C, 10635_G|A, 10639_C|T,
10647_C|T, 10658_AG|CA, 10662_C|T
Case 2 (A.1.NmC1): OP508698.1
| Target: 377 samples | Number of changes: 1450 | |
| BC: A.1.NmC1 + A.1.NmC2 + A.1.NmC1 | BC BR: 1433-1434, 1447-1448 | BC BR coord: 10523 - 10524, 10657 - 10658 |
| Direction L1: >> | Initial region span: 1-1424,1434-1447,1448-1450 | Gap history (edge excluded): 1424-1448 -> 1424-1434 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 7.73e-02 | |
| Rec. model vs L1: 6.36e-04 | Rec. model vs L2: 2.63e-211 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1424 |
173.595140 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
1431 |
151.480149 |
83.166359 |
2777.667281 |
8.376903e-35 |
|
|
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1434 |
18.107395 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
835 |
1447 |
-0.319000 |
-23.371028 |
76.742055 |
5.850527e-18 |
|
|
|
| A.1.NmC1 |
0 |
1447 |
-0.823096 |
-10.248538 |
50.497077 |
2.918358e-12 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1448 |
-0.374547 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 195_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A,
354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 446_T|C, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT,
488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 535_C|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C,
649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C,
784_G|A, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G,
931_C|T, 934_G|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1045_CC|TT, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C,
1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T,
1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T,
1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT,
1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A,
1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C,
1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G,
1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G,
1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G,
2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG,
2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2242_T|C, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G,
2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A,
2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2545_G|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G,
2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G,
2755_T|A, 2761_A|G, 2770_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A,
2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C,
3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G,
3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G,
3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A,
3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G,
3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A,
3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C,
3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C,
3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C,
4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T,
4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A,
4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA,
4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_CTGC|TCAT, 4531_C|T,
4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C,
4663_C|A, 4667_T|C, 4669_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4762_C|T,
4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A,
4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T,
4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G,
5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A,
5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5290_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T,
5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A,
5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T,
5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A,
5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5932_C|A, 5935_A|T, 5941_T|C,
5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A,
6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C,
6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G,
6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG,
6517_C|T, 6523_T|C, 6526_GT|TC, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_AC|GT, 6625_A|G, 6631_A|G,
6634_G|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G,
6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A,
6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G,
7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C,
7216_C|T, 7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C,
7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G,
7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G,
7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A,
7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T,
7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T,
8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C,
8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A,
8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C,
8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG,
8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T,
8566_T|C, 8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A,
8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C,
8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G,
9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G,
9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T,
9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T,
9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C,
9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T,
9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T,
9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G,
10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G,
10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A,
10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C, 10330_C|T, 10336_A|G, 10338_TG|CC, 10348_T|C, 10351_C|T, 10355_A|G, 10475_A|T, 10521_TG|CA, 10528_G|C, 10533_A|G,
10535_T|A, 10549_C|A, 10553_A|G, 10555_AC|GT, 10558_A|G, 10562_T|C, 10605_A|C, 10607_C|T, 10614_T|C, 10635_G|A, 10639_C|T, 10647_C|T, 10658_AG|CC, 10662_C|A, 10703_C|T
Case 2 (A.1.NmC1): OP508680.1
| Target: 377 samples | Number of changes: 1445 | |
| BC: A.1.NmC1 + A.1.NmC2 + A.1.NmC1 | BC BR: 1428-1429, 1442-1443 | BC BR coord: 10523 - 10524, 10657 - 10658 |
| Direction L1: >> | Initial region span: 1-1428,1429-1442,1443-1445 | Gap history (edge excluded): 1428-1443 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.59e-10 | |
| Rec. model vs L1: 6.36e-04 | Rec. model vs L2: 7.48e-266 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1428 |
177.863460 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
1425 |
98.316722 |
9.793342 |
2936.413316 |
1.482473e-73 |
|
|
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1429 |
18.107395 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
835 |
1442 |
-0.319000 |
-23.371028 |
76.742055 |
5.850527e-18 |
|
|
|
| A.1.NmC1 |
0 |
1442 |
-0.823096 |
-10.248538 |
50.497077 |
2.918358e-12 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1443 |
-0.374547 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 116_A|C, 119_A|C, 166_A|T, 178_T|C, 192_A|G, 195_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G,
346_A|G, 352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C,
473_ACG|GTT, 488_T|C, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 535_C|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C,
628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T,
781_T|C, 784_G|A, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G,
910_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1045_CC|TT, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C,
1094_T|C, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G,
1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C,
1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C,
1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A,
1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T,
1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G,
1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C,
1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T,
2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T,
2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2242_T|C, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T,
2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A,
2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2545_G|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2626_T|C,
2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A,
2761_A|G, 2770_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A,
2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G,
3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C,
3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A,
3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A,
3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3480_G|A, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G,
3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A,
3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C,
3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C,
3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C,
4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4089_T|A, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C,
4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T,
4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T,
4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_CTGC|TCAT,
4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C,
4645_T|C, 4663_C|A, 4667_T|C, 4669_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A,
4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C,
4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A,
4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G,
5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5167_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T,
5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5290_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T,
5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C,
5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G,
5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A,
5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5932_C|A,
5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C,
6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C,
6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C,
6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C,
6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6526_GT|TC, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_TG|CA, 6622_AC|GT,
6625_A|G, 6631_A|G, 6634_G|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T,
6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T,
6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C,
7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A,
7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T,
7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C,
7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A,
7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T,
7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G,
7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G,
8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A,
8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T,
8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T,
8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T,
8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T,
8560_C|T, 8566_T|C, 8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G,
8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C,
8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A,
9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C,
9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG,
9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C,
9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T,
9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G,
9772_C|T, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T,
9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C,
10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C,
10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G,
10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10475_A|T, 10477_A|G, 10521_TG|CA, 10528_G|C, 10533_A|G, 10535_T|A, 10549_C|A, 10553_A|G, 10555_AC|GT, 10558_A|G,
10562_T|C, 10605_A|C, 10607_C|T, 10614_T|C, 10635_G|A, 10639_C|T, 10647_C|T, 10658_AG|CC, 10662_C|A, 10703_C|T
Case 2 (A.1.NmC1): OP508695.1
| Target: 377 samples | Number of changes: 1448 | |
| BC: A.1.NmC1 + A.1.NmC2 | BC BR: 1432-1433 | BC BR coord: 10523 - 10524 |
| Direction L1: >> | Initial region span: 1-1423,1433-1448 | Gap history (edge excluded): 1423-1433 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.10e+10 | Rec. model vs L2: 2.71e-213 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1423 |
176.524080 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
1430 |
129.672357 |
80.732279 |
2782.535442 |
2.692980e-37 |
|
|
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1433 |
8.107395 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 195_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A,
354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 535_C|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T,
664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G,
823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C,
943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1045_CC|TT, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T,
1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C,
1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T,
1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G,
2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A,
2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T,
2239_C|T, 2242_T|C, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C,
2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G,
2515_A|C, 2524_C|T, 2527_T|A, 2545_G|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C,
2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2770_A|G, 2773_T|A, 2776_G|T,
2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A,
2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C,
3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G,
3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG,
3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T,
3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3480_G|A, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G,
3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T,
3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G,
3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C,
3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T,
4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4089_T|A, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA,
4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A,
4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A,
4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_CTGC|TCAT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C,
4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A, 4667_T|C, 4669_G|A,
4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G,
4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T,
4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C,
4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A,
5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C,
5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5290_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G,
5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C,
5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T,
5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C,
5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G,
5974_T|C, 5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T,
6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A,
6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C,
6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6526_GT|TC,
6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T, 6664_A|G, 6667_C|T,
6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G,
6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A,
6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T,
7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A,
7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C,
7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C,
7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G,
7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7695_A|G, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T,
7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A,
7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G,
8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G,
8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C,
8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A,
8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T,
8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8569_C|A,
8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A,
8704_T|C, 8707_A|G, 8743_G|A, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G,
8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C,
9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A,
9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A,
9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G,
9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G,
9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T,
9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A,
9910_C|T, 9916_A|G, 9922_T|C, 9938_C|T, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG,
10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T,
10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A,
10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C, 10330_C|T, 10336_A|G, 10338_TG|CC, 10348_T|C, 10351_C|T, 10355_A|G, 10475_A|T, 10521_TG|CA, 10528_G|C, 10533_A|G, 10535_T|A, 10549_C|A, 10553_A|G,
10555_AC|GT, 10558_A|G, 10562_T|C, 10605_A|C, 10607_C|T, 10614_T|C, 10635_G|A, 10639_C|T, 10647_C|T, 10658_AG|CC, 10662_C|A
Case 2 (A.1.NmC1): OP508686.1
| Target: 377 samples | Number of changes: 1439 | |
| BC: A.1.NmC1 + A.1.NmC2 | BC BR: 1428-1429 | BC BR coord: 10523 - 10524 |
| Direction L1: >> | Initial region span: 1-1419,1429-1439 | Gap history (edge excluded): 1419-1429 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.59e-01 | Rec. model vs L2: 4.95e-207 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1419 |
176.649871 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
1426 |
140.250567 |
91.310489 |
2759.379023 |
9.349362e-33 |
|
|
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1429 |
13.699858 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 195_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A,
354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|C, 535_C|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T,
664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G,
823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C,
943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1045_CC|TT, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T,
1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C,
1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T,
1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G,
2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A,
2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T,
2239_C|T, 2242_T|C, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C,
2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G,
2515_A|C, 2524_C|T, 2527_T|A, 2545_G|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C,
2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2770_A|G, 2773_T|A, 2776_G|T,
2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A,
2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C,
3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G,
3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG,
3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T,
3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3480_G|A, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G,
3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T,
3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G,
3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C,
3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T,
4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A,
4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C,
4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T,
4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_CTGC|TCAT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C,
4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A, 4667_T|C, 4669_G|A, 4678_C|T,
4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C,
4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A,
4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C,
5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G,
5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T,
5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5290_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C,
5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C,
5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G,
5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G,
5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T,
5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A,
6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A,
6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A,
6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6526_GT|TC, 6529_CC|TT, 6532_C|G,
6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_TG|CA, 6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A,
6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T,
6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G,
6958_TT|CG, 6964_C|T, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T,
7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T,
7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT,
7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C,
7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C,
7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G,
7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG,
7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G,
8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T,
8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C,
8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T,
8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A,
8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A,
8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8749_T|C,
8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T,
8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A,
9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A,
9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T,
9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G,
9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A,
9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A,
9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G,
9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T,
10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T,
10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C, 10330_C|T,
10336_A|G, 10338_TG|CC, 10348_T|C, 10351_C|T, 10355_A|G, 10475_A|T, 10521_TG|CA, 10528_G|C, 10533_A|G, 10535_T|A, 10549_C|A, 10553_A|G, 10555_AC|GT, 10558_A|G, 10562_T|C, 10605_A|C,
10607_C|T, 10614_T|C
Case 3 (A.1): OQ932914.1
| Target: 835 samples | Number of changes: 1170 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1151-1152 | BC BR coord: 10103 - 10104 |
| Direction L1: >> | Initial region span: 1-1098,1152-1170 | Gap history (edge excluded): 1098-1152 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 8.64e-194 | Rec. model vs L2: 1.48e-36 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1098 |
13.294905 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
835 |
3 |
1.565350 |
-91.907748 |
2991.815495 |
2.772633e-27 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1152 |
0.968683 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 71_A|T, 80_A|T, 83_CG|GT, 108_C|T, 118_C|A, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC,
322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C,
467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T,
613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A,
775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G,
904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G,
1072_T|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A,
1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G,
1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG,
1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C,
1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A,
1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A,
1860_C|G, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|A, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C,
2011_A|G, 2017_T|C, 2023_T|C, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C,
2464_C|T, 2467_C|A, 2470_C|A, 2478_G|C, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T,
2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A,
2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T,
2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T,
3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A,
3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G,
3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T,
3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT,
3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G,
3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G,
3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C,
3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA,
4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4420_A|G,
4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T,
4549_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A,
5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A,
5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5282_.|A, 5287, 5293_C|G, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5321_G|T, 5326_T|C, 5338_C|T, 5344_G|A,
5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G,
5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T,
5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5649_A|T, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A,
5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A,
5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G,
6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A,
6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C,
6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C,
6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A,
7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7168_A|G, 7171_G|T, 7174_G|A, 7201_A|G, 7216_C|T, 7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A,
7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C,
7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G,
7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|AC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG,
7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A,
7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A,
7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G,
8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T,
8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T,
8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A,
8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC,
8524_C|T, 8526_A|G, 8536_C|T, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G,
8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T,
8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T,
8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC,
9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG,
9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT,
9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A,
9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9644_G|C, 9646_G|A, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC,
9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG,
9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9985_T|A, 9988_C|A,
9991_A|T, 10003_C|A, 10006_AT|TA, 10018_A|G, 10027_A|C, 10030_A|G, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G,
10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T
Case 3 (A.1): MH666056.1
| Target: 835 samples | Number of changes: 1430 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1231-1232 | BC BR coord: 8847 - 8848 |
| Direction L1: >> | Initial region span: 1-1154,1355-1430 | Gap history (edge excluded): 1154-1355 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 3.05e-240 | Rec. model vs L2: 6.87e-53 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1154 |
92.967015 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
560 |
3.167280 |
-49.747693 |
2621.495387 |
4.246771e-43 |
|
|
|
| A.1 |
835 |
4 |
1.560576 |
-110.805663 |
2743.611327 |
1.294820e-69 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1355 |
0.551474 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 171_G|A, 177_TTCG|CGGA, 186_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G,
346_A|G, 352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C,
473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C,
628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T,
781_T|C, 784_G|A, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_AC|GT, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G,
910_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G,
1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A,
1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G,
1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT,
1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A,
1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C,
1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G,
1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C,
1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T,
2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T,
2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G,
2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T,
2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G,
2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_GG|AA, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A,
2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A,
2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C,
3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G,
3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG,
3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_A|G, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T,
3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T,
3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G,
3793_A|G, 3802_T|C, 3805_G|A, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A,
3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T,
4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4154_C|A, 4165_C|A, 4171_T|C, 4183_T|C,
4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A,
4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4381_C|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T,
4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C,
4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4654_C|T, 4663_C|A, 4667_T|C, 4669_G|A,
4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G,
4780_T|C, 4786_T|C, 4792_A|C, 4804_T|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G,
4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C,
4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A,
5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C,
5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C,
5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C,
5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|C, 5605_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G,
5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G,
5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T,
5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T,
6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C,
6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C,
6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6530_C|T,
6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A,
6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T,
6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G,
6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T,
7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T,
7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT,
7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C,
7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C,
7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G,
7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG,
7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G,
8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T,
8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C,
8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8328_TTAC|GGGT, 8336_AAC|TTT, 8340_A|T, 8342_A|G, 8346_CC|GG, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G,
8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA,
8470_A|T, 8476_A|G, 8484_AG|GA, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8574_A|G,
8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G,
8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8922_A|T,
8924_CCAAAGT|TTTTCTC, 8934_GGGAAC|TCCCCA, 8941_GG|CA, 8944, 8946_A|T, 8949_A|T, 8951_G|C, 8953_A|C, 8955, 8956_G|C, 8959_.|TT, 8961_T|G, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A,
9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C,
9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T,
9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C,
9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C,
9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9691_C|T, 9694_C|T,
9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A,
9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C,
9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG,
10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A,
10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C, 10330_C|T, 10336_A|G, 10338_TG|CC
Case 3 (A.1): MH666058.1
| Target: 835 samples | Number of changes: 1430 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1231-1232 | BC BR coord: 8847 - 8848 |
| Direction L1: >> | Initial region span: 1-1154,1355-1430 | Gap history (edge excluded): 1154-1355 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 3.05e-240 | Rec. model vs L2: 6.87e-53 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1154 |
92.967015 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
560 |
3.167280 |
-49.747693 |
2621.495387 |
4.246771e-43 |
|
|
|
| A.1 |
835 |
4 |
1.560576 |
-110.805663 |
2743.611327 |
1.294820e-69 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1355 |
0.551474 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 171_G|A, 177_TTCG|CGGA, 186_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G,
346_A|G, 352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C,
473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C,
628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T,
781_T|C, 784_G|A, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_AC|GT, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G,
910_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G,
1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A,
1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G,
1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT,
1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A,
1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C,
1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G,
1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C,
1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T,
2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T,
2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G,
2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T,
2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G,
2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_GG|AA, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A,
2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A,
2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C,
3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G,
3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG,
3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_A|G, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T,
3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T,
3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G,
3793_A|G, 3802_T|C, 3805_G|A, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A,
3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T,
4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4154_C|A, 4165_C|A, 4171_T|C, 4183_T|C,
4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A,
4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4381_C|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T,
4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C,
4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4654_C|T, 4663_C|A, 4667_T|C, 4669_G|A,
4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G,
4780_T|C, 4786_T|C, 4792_A|C, 4804_T|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G,
4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C,
4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A,
5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C,
5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C,
5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C,
5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|C, 5605_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G,
5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G,
5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T,
5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T,
6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C,
6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C,
6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6530_C|T,
6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A,
6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T,
6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G,
6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T,
7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T,
7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT,
7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C,
7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C,
7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G,
7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG,
7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G,
8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T,
8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C,
8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8328_TTAC|GGGT, 8336_AAC|TTT, 8340_A|T, 8342_A|G, 8346_CC|GG, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G,
8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA,
8470_A|T, 8476_A|G, 8484_AG|GA, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8574_A|G,
8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G,
8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8922_A|T,
8924_CCAAAGT|TTTTCTC, 8934_GGGAAC|TCCCCA, 8941_GG|CA, 8944, 8946_A|T, 8949_A|T, 8951_G|C, 8953_A|C, 8955, 8956_G|C, 8959_.|TT, 8961_T|G, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A,
9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C,
9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T,
9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C,
9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C,
9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9691_C|T, 9694_C|T,
9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A,
9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C,
9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG,
10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A,
10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C, 10330_C|T, 10336_A|G, 10338_TG|CC
Case 3 (A.1): ON502428.1
| Target: 835 samples | Number of changes: 1418 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1172-1173 | BC BR coord: 8445 - 8446 |
| Direction L1: >> | Initial region span: 1-1172,1181-1418 | Gap history (edge excluded): 1172-1181 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.91e-184 | Rec. model vs L2: 1.47e-79 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1172 |
152.495069 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
687 |
30.359312 |
20.438814 |
2345.122371 |
5.612158e-58 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1181 |
19.417944 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
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5497_T|C, 5500_G|A, 5530_A|T, 5533_C|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G,
5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T,
5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C,
5989_A|G, 5992_C|T, 6004_T|C, 6010_G|A, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T,
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6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G,
6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G,
6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G,
6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG,
6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T,
7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|A, 7247_T|A,
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7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C,
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8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A,
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8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A,
8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8447_GG|AT, 8450, 8451_CC|AG, 8457_.|T, 8458_ACAA|TGGC, 8466_CCAT|AGGA, 8472_A|G, 8479_G|A, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A,
8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C,
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8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C,
8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A,
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9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C,
9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C,
9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T,
9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A,
9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G,
9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A,
10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T,
10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C, 10330_C|T
Case 3 (A.1): MH018098.1
| Target: 835 samples | Number of changes: 1024 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 880-881 | BC BR coord: 9016 - 9017 |
| Direction L1: >> | Initial region span: 1-767,881-1024 | Gap history (edge excluded): 767-881 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 7.70e-190 | Rec. model vs L2: 5.90e-62 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
767 |
49.880450 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
326 |
15.321215 |
-67.148639 |
2674.297278 |
1.063068e-43 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
881 |
8.183121 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|T, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 931_C|T, 934_G|C, 943_A|G,
961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A,
1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T,
1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T,
1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C,
1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A,
1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G,
1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C,
1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A,
2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C,
2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C,
2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C,
2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A,
2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A,
2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A,
2863_A|G, 2878_A|G, 2881_C|T, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G,
3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A,
3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|A, 3505_A|G, 3514_A|G,
3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T,
3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T,
4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C,
4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T,
4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T,
4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T,
4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T,
4932_G|A, 4939_G|A, 4948_C|T, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A,
5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T,
5164_T|C, 5182_G|A, 5431_T|C, 5437_T|C, 5443_C|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5533_C|T, 5536_A|C, 5539_G|T, 5542_T|G,
5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A,
5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 6174_A|G,
6182_A|C, 6187_A|G, 6190_A|G, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6264_A|G, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A,
6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C,
6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T,
6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C,
7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T,
7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|A, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T,
7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C,
7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A,
7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7936_CA|TC, 7939_A|G,
7942_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A,
8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G,
8437_G|A, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G,
8536_C|T, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C,
8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A,
8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9010_A|G, 9016_G|A,
9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C,
9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG,
9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T,
9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G,
9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9850_CA|GG, 9856_G|C, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C,
9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T,
10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A,
10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10303_C|T, 10309_C|T, 10315_T|C, 10330_C|T
Case 3 (A.1): ON502424.1
| Target: 835 samples | Number of changes: 1134 | |
| BC: A.1.NmC2 + A.1 + A.1.NmC2 | BC BR: 494-495, 505-506 | BC BR coord: 4008 - 4009, 5430 - 5431 |
| Direction L1: >> | Initial region span: 1-494,495-505,506-1134 | Gap history (edge excluded): 494-506 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.62e-36 | |
| Rec. model vs L1: 5.28e-50 | Rec. model vs L2: 8.58e+04 | |
| Flags: Model_2BP_Best | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
494 |
47.066939 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
290 |
12.373643 |
13.981653 |
2436.036694 |
1.082515e-21 |
|
|
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
495 |
6.893663 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
506 |
-0.193512 |
-60.580501 |
581.161003 |
4.965693e-30 |
|
|
|
| A.1.NmC2 |
0 |
506 |
-0.194051 |
-75.038524 |
610.077049 |
2.606643e-36 |
|
|
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
506 |
15.187522 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1414_C|T, 1423_A|G,
1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A,
1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A,
1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T,
1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A,
1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A,
2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G,
2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A,
2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C,
2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A,
2575_G|A, 2581_A|T, 2595_CC|GT, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A,
2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A,
2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C,
3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3097_CT|TC, 3100_G|A, 3104_G|A, 3107_T|C,
3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A,
3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G,
3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C,
3490_G|C, 3496_C|A, 3502_T|A, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G,
3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T,
3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A,
3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A,
4006_CG|AA, 4009, 4013_T|C, 4018_.|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|T, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C,
5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5533_C|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T,
5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C,
5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G,
5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T,
6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A,
6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C,
6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C,
6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C,
6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA,
6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T,
6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T,
7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A,
7240_C|A, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT,
7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A,
7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G,
7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C,
7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA,
7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A,
8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155,
8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A,
8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T,
8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A,
8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A,
8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010,
9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC,
9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG,
9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT,
9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A,
9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9661_T|C, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC,
9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG,
9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T,
10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C,
10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C,
10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C, 10330_C|T
Case 3 (A.1): ON022510.1
| Target: 835 samples | Number of changes: 1187 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1114-1115 | BC BR coord: 9771 - 9772 |
| Direction L1: >> | Initial region span: 1-1104,1121-1187 | Gap history (edge excluded): 1104-1121 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 3.82e-190 | Rec. model vs L2: 9.43e-79 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1104 |
68.539138 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
362 |
17.153198 |
-62.947686 |
2859.895372 |
8.081642e-54 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1121 |
4.068088 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T, 358_T|C,
361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C,
498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C,
670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C, 826_A|G,
829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A, 961_T|C,
964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A,
1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1201_C|T, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G,
2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A,
2112_G|C, 2116_A|G, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G,
2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G,
2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C,
2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G,
2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3097_CT|TC,
3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G,
3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3292_C|T, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T,
3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A,
3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|A, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C,
3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 4013_T|C,
4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G,
4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C,
4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T,
4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A,
4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A,
4948_C|T, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T,
5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5458_A|G,
5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5533_C|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T,
5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A,
5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C,
5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A,
6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6211_C|T, 6220_T|C,
6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G,
6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG,
6517_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_CA|TG,
6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G,
6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A,
6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T,
7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_GC|TT, 7174_G|A, 7201_A|G, 7210_T|C,
7216_C|T, 7225_A|T, 7228_G|A, 7240_C|A, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C,
7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G,
7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G,
7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC,
7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C,
7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T,
8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T,
8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T,
8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G,
8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G,
8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C,
8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C,
9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T,
9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C,
9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C,
9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9674_C|T, 9679_C|T, 9694_C|T,
9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9811_C|T, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A,
9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C,
9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG,
10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A,
10249_C|A, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): MN604280.1
| Target: 835 samples | Number of changes: 1314 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1115-1116 | BC BR coord: 8649 - 8650 |
| Direction L1: >> | Initial region span: 1-949,1118-1314 | Gap history (edge excluded): 949-1118 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.51e-189 | Rec. model vs L2: 1.82e-85 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
949 |
80.609698 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
311 |
30.060324 |
-84.561512 |
2645.123025 |
1.429780e-59 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1118 |
14.578369 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G,
2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A,
2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T,
2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C,
2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_GG|AA, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G,
2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C,
2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C,
2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C,
2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G,
3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3097_CT|TC, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T,
3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C,
3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C,
3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|A, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G,
3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G,
3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C,
3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|T, 4039_G|T, 4042_C|T, 4045_T|C,
4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C,
4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T,
4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4769_T|C, 4772_A|G,
4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T,
4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4948_C|T, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C,
4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A,
5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T,
5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5329_C|T, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C,
5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A,
5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5533_C|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G,
5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G,
5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T,
5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T,
6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A,
6264_A|G, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C,
6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6530_C|T,
6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A,
6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T,
6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G,
6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T,
7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|A,
7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7299, 7303, 7306, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7393_G|A,
7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C,
7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G,
7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A,
7792_G|A, 7798_G|C, 7801_C|T, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A,
7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA,
8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T,
8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T,
8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C,
8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A,
8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010,
9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC,
9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG,
9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT,
9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A,
9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A,
9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9862_A|G,
9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T,
10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA,
10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C,
10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10303_C|T
Case 3 (A.1): MN604284.1
| Target: 835 samples | Number of changes: 1370 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1296-1297 | BC BR coord: 9771 - 9772 |
| Direction L1: >> | Initial region span: 1-1155,1303-1370 | Gap history (edge excluded): 1155-1303 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.33e-190 | Rec. model vs L2: 8.35e-84 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1155 |
171.507458 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
686 |
50.368109 |
17.273679 |
2699.452643 |
3.198528e-61 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1303 |
4.253144 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A,
961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A,
1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T,
1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T,
1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G,
1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T,
1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C,
1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T,
1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C,
2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C,
2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T,
2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T,
2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T,
2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A,
2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A,
2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T,
2974_AT|GC, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A,
3091_C|T, 3094_C|T, 3097_CT|TC, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C,
3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG,
3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G,
3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|A, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G,
3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C,
3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C,
3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A,
3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T,
4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C,
4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A,
4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A,
4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C,
4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A, 4667_T|C, 4669_G|A, 4678_C|T,
4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C,
4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A,
4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4948_C|T, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C,
5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G,
5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T,
5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5368_C|T,
5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T,
5497_T|C, 5500_G|A, 5530_A|T, 5533_C|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G,
5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T,
5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C,
5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A,
6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C,
6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G,
6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T,
6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_CA|TG, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T,
6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T,
6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T,
6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T,
7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|A, 7247_T|A,
7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G,
7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T,
7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C,
7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A,
7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C,
7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T,
8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A,
8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C,
8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8341_A|G, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T,
8398_G|A, 8401_T|C, 8404_C|T, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C,
8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G,
9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G,
9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T,
9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C,
9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T,
9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9674_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C,
9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9811_C|T, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A,
9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G,
10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C,
10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G,
10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022400.1
| Target: 835 samples | Number of changes: 987 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 566-567 | BC BR coord: 6186 - 6187 |
| Direction L1: >> | Initial region span: 1-404,567-987 | Gap history (edge excluded): 404-567 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.39e-197 | Rec. model vs L2: 2.98e-09 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
404 |
36.528177 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
272 |
24.759593 |
-13.717271 |
1763.434543 |
2.365172e-10 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
567 |
14.246422 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G,
2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A,
2112_G|C, 2116_A|G, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G,
2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G,
2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C,
2812_G|A, 2833_G|A, 2836_G|A, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G,
3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G,
3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G,
3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A,
3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A,
4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C,
4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T,
5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C,
5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT,
5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C,
5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5868_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A,
5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G,
6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_AC|GT, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A,
6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG,
6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T,
6523_T|C, 6527_T|C, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T,
6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G,
6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A,
6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T,
7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T,
7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C,
7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G,
7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G,
7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC,
7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C,
7915_G|A, 7918_A|G, 7920_AG|GA, 7936_CA|TC, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T,
8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C,
8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A,
8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C,
8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A,
8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010,
9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC,
9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T,
9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T,
9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T,
9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G
Case 3 (A.1): ON022381.1
| Target: 835 samples | Number of changes: 1424 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1393-1394 | BC BR coord: 10110 - 10111 |
| Direction L1: >> | Initial region span: 1-1392,1394-1424 | Gap history (edge excluded): 1392-1394 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.41e-193 | Rec. model vs L2: 4.29e-20 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1392 |
198.700422 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1392 |
153.258607 |
142.127739 |
2515.744522 |
5.955332e-21 |
|
* |
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1394 |
3.144366 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
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8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T,
8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G,
9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C,
9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A,
9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T,
9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C,
9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T,
9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T,
9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G,
10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_CC|TT, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G,
10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA,
10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022390.1
| Target: 835 samples | Number of changes: 1422 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1391-1392 | BC BR coord: 10110 - 10111 |
| Direction L1: >> | Initial region span: 1-1390,1392-1422 | Gap history (edge excluded): 1390-1392 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.42e-193 | Rec. model vs L2: 7.36e-20 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1390 |
197.169730 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1390 |
152.367384 |
141.236517 |
2517.526967 |
1.123784e-20 |
|
* |
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1392 |
3.144366 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C,
2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C,
2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG,
2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C,
2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G,
2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C,
2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C,
2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C,
2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G,
3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T,
3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C,
3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C,
3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G,
3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G,
3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C,
3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C,
4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C,
4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T,
4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T,
4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C,
4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A, 4667_T|C, 4669_G|A, 4678_C|T,
4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C,
4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G,
4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T,
5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G,
5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T,
5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T,
5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G,
5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G,
5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G,
5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C,
5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T,
6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C,
6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C,
6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6529_CC|TT,
6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C,
6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA,
6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T,
6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T,
7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A,
7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C,
7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C,
7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G,
7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A,
7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G,
7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA,
8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T,
8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T,
8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C,
8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G,
8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8569_C|A, 8574_A|G,
8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C,
8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G,
8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C,
9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A,
9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A,
9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G,
9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C,
9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9778_C|T, 9787_C|T,
9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A,
9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G,
10051_G|A, 10066_G|A, 10096_A|G, 10111_CC|TT, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T,
10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G,
10297_A|G, 10309_C|T
Case 3 (A.1): ON022725.1
| Target: 835 samples | Number of changes: 1017 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 960-961 | BC BR coord: 9211 - 9212 |
| Direction L1: >> | Initial region span: 1-833,961-1017 | Gap history (edge excluded): 833-961 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.06e-192 | Rec. model vs L2: 4.09e-56 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
833 |
51.448802 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
421 |
32.517113 |
-56.653746 |
2697.307493 |
1.832752e-39 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
961 |
3.722580 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
835 |
961 |
1.829215 |
1.829215 |
290.341571 |
2710.802512 |
* |
* |
|
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G,
2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A,
2112_G|C, 2116_A|G, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G,
2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G,
2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C,
2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T,
2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A,
3107_T|C, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C,
3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T,
3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C,
3496_C|A, 3502_T|A, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC,
3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C,
4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA,
4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A,
4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4387_G|A, 4393_C|T, 4399_C|T, 4409_G|A, 4411_A|T, 4420_A|G, 5458_A|G,
5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5533_C|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T,
5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A,
5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C,
5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A,
6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6211_C|T, 6220_T|C,
6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G,
6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG,
6517_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_CA|TG,
6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G,
6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A,
6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T,
7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|T, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T,
7225_A|T, 7228_G|A, 7240_C|A, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G,
7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A,
7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC,
7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T,
7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A,
7918_A|G, 7920_AG|GA, 7936_CA|TC, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T,
8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T,
8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T,
8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G,
8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G,
8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8911_G|A, 8923_C|T, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9010_A|G, 9016_G|A, 9040_A|G,
9043_A|G, 9061_A|C, 9067_T|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9877_A|G,
9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C,
10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G,
10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A,
10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): MK882614.1
| Target: 835 samples | Number of changes: 958 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 842-843 | BC BR coord: 9465 - 9466 |
| Direction L1: >> | Initial region span: 1-493,844-958 | Gap history (edge excluded): 493-844 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 8.48e-185 | Rec. model vs L2: 9.84e-20 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
493 |
41.242852 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
363 |
27.494221 |
-15.467503 |
2660.935007 |
1.198848e-16 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
844 |
6.45804 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G,
2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A,
2112_G|C, 2116_A|G, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G,
2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G,
2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C,
2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G,
2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3097_CT|TC,
3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G,
3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C,
3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C,
3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C,
4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA,
4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A,
4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G,
5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T,
5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A,
5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C,
5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A,
6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6211_C|T, 6220_T|C,
6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G,
6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG,
6517_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C,
7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G,
7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG,
7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G,
8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T,
8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C,
8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T,
8398_G|A, 8401_T|C, 8404_C|T, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C,
8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G,
9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G,
9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T,
9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_T|C, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T,
9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C,
9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9775_T|C,
9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T,
9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG,
10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T,
10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G,
10297_A|G, 10303_C|T
Case 3 (A.1): MK882616.1
| Target: 835 samples | Number of changes: 697 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 183-184, 496-497 | BC BR coord: 1752 - 1753, 8706 - 8707 |
| Direction L1: << | Initial region span: 1-183,184-334,499-697 | Gap history (edge excluded): 183-499 -> 334-499 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 4.95e-50 | |
| Rec. model vs L1: 1.54e-85 | Rec. model vs L2: 2.58e-23 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
183 |
14.468292 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
335 |
19.979522 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
184 |
-0.008963 |
-108.665714 |
2253.331427 |
2.451842e-51 |
|
|
|
| A.1.NmC2 |
0 |
184 |
-0.130932 |
-102.753649 |
2241.507297 |
9.040094e-49 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
499 |
15.448538 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A,
1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1165_TC|CT, 1171_TC|CA, 1174_T|C, 1183_T|C, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G,
1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T,
1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A,
1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C,
2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G,
3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3097_CT|TC, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T,
3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A,
5530_A|T, 5536_A|C, 5539_G|T, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A,
5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 6211_C|T,
6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6271_T|C, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6407, 6409_T|C, 6412_A|C,
6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6530_C|T,
6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T,
7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7528_T|C,
7531_T|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C,
7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A,
7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C,
7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T,
8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A,
8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C,
8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A,
8401_T|C, 8404_C|T, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T,
8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G,
9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C,
9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A,
9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T,
9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C,
9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T,
9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T,
9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G,
10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G,
10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA,
10276_G|A, 10281_A|G, 10297_A|G, 10303_C|T
Case 3 (A.1): MH030091.1
| Target: 835 samples | Number of changes: 574 | |
| BC: A.1.NmC2 + A.1 | BC BR: 400-401 | BC BR coord: 3678 - 3679 |
| Direction L1: >> | Initial region span: 1-400,464-574 | Gap history (edge excluded): 400-464 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.60e-157 | Rec. model vs L2: 1.64e-24 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
400 |
33.070298 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
400 |
32.205520 |
32.20552 |
933.58896 |
0.421052 |
* |
* |
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
464 |
22.618614 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
514 |
6.851514 |
-68.972556 |
1987.945111 |
8.549037e-39 |
|
|
|
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T,
1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A,
1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T,
1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G,
1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A,
1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T,
2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G,
2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T,
2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C,
2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T,
2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A,
3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C,
3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG,
3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G,
3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G,
3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C,
3667_A|G, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G,
5239_T|A, 5246_T|C, 5251_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5290_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A,
5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A,
5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A,
6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G,
6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T,
6571_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T,
10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G,
10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A,
10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10303_C|T
Case 3 (A.1): ON022734.1
| Target: 835 samples | Number of changes: 1110 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 985-986 | BC BR coord: 8649 - 8650 |
| Direction L1: >> | Initial region span: 1-905,986-1110 | Gap history (edge excluded): 905-986 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 6.38e-193 | Rec. model vs L2: 7.11e-55 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
905 |
76.262878 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
363 |
27.494221 |
-22.79997 |
2503.59994 |
4.553147e-39 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
986 |
4.25268 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G,
2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A,
2112_G|C, 2116_A|G, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G,
2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G,
2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C,
2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G,
2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3097_CT|TC,
3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G,
3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G,
3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G,
3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|A, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC,
3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 4013_T|C, 4018_T|C,
4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G,
4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A,
4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A,
4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T,
4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4948_C|T, 4954_T|G,
4957_C|T, 4960_T|C, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T,
5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5458_A|G, 5470_C|A, 5473_T|C,
5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5533_C|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T,
5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T,
5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A,
5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G,
6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T,
6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C,
6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C,
6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T,
6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G,
6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6940_C|T,
6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T,
7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A,
7240_C|A, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT,
7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A,
7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G,
7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C,
7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA,
7936_CA|TC, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA,
8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T,
8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T,
8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C,
8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A,
9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A,
9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G,
9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C,
9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T,
9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A,
9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10036_GA|TG, 10051_G|A, 10096_A|G, 10111_C|T, 10129_G|A,
10132_A|G, 10134_T|C
Case 3 (A.1): ON022371.1
| Target: 835 samples | Number of changes: 1368 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1336-1337 | BC BR coord: 10103 - 10104 |
| Direction L1: >> | Initial region span: 1-1334,1337-1368 | Gap history (edge excluded): 1334-1337 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 8.71e-193 | Rec. model vs L2: 6.02e-54 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1334 |
86.284771 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
596 |
8.146044 |
-17.85154 |
2861.70308 |
1.204409e-41 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1337 |
3.264396 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 437_A|G, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C,
493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 641_C|T, 649_G|A,
655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A,
802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T,
934_G|C, 943_AC|GT, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C,
1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G,
1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C,
1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1446_C|T, 1468_A|G, 1474_C|T, 1482_TC|CT,
1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A,
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9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9691_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T,
9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A,
9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A,
10066_G|A, 10090_C|T, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G,
10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G,
10309_C|T
Case 3 (A.1): ON022412.1
| Target: 835 samples | Number of changes: 1370 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1338-1339 | BC BR coord: 10103 - 10104 |
| Direction L1: >> | Initial region span: 1-1336,1339-1370 | Gap history (edge excluded): 1336-1339 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 8.71e-193 | Rec. model vs L2: 3.72e-46 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1336 |
76.212781 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
596 |
8.146044 |
-18.210475 |
2864.420951 |
1.985059e-37 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1339 |
3.264396 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 437_A|G, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C,
493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 641_C|T, 649_G|A,
655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A,
802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T,
934_G|C, 943_AC|GT, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C,
1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G,
1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C,
1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1446_C|T, 1468_A|G, 1474_C|T, 1482_TC|CT,
1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A,
1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C,
1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G,
1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C,
1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T,
2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T,
2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G,
2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T,
2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C,
2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G,
2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C,
2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C,
3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G,
3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T,
3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_A|G, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C,
3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C,
3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A,
3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G,
3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C,
3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C,
4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA,
4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A,
4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4381_C|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T,
4420_A|G, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4804_T|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A,
4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C,
4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A,
5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T,
5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C,
5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A,
5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C,
5602_A|C, 5605_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A,
5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C,
5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A,
6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T,
6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C,
6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G,
6508_AA|GG, 6517_C|T, 6520_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G,
6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G,
6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G,
6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7024_T|C, 7027_T|C, 7039_T|C,
7046_T|C, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G,
7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C,
7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G,
7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7606_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A,
7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C,
7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T,
7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7936_CA|TC, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G,
8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A,
8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T,
8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T,
8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T,
8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T,
8566_T|C, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A,
8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T,
8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G,
9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C,
9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A,
9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T,
9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C,
9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9691_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G,
9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T,
9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G,
10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10090_C|T, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G,
10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A,
10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): OP508715.1
| Target: 835 samples | Number of changes: 1471 | |
| BC: A.1.NmC2 + A.1 | BC BR: 1429-1430 | BC BR coord: 10354 - 10355 |
| Direction L1: >> | Initial region span: 1-1429,1432-1471 | Gap history (edge excluded): 1429-1432 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 5.51e-229 | Rec. model vs L2: 6.37e-107 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1429 |
151.75488 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1432 |
8.341603 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 80_A|G, 108_C|T, 118_C|A, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_CC|TT, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G,
352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 451_A|G, 454_TT|CC, 467_T|C,
473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 598_C|T, 604_C|T, 610_C|T, 613_A|C,
628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T,
781_T|C, 784_G|A, 802_A|G, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G,
931_C|T, 934_G|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C,
1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T,
1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T,
1333_T|C, 1352_T|C, 1354_G|A, 1378_T|C, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T,
1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1525_G|A, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T,
1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A,
1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1781_G|A, 1785_AC|GT, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG,
1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1894_C|T, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A,
1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T,
2083_T|C, 2086_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G,
2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A,
2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T,
2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C,
2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA,
2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C,
2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G,
3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A,
3133_A|G, 3142_T|C, 3157_A|G, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3229_A|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G,
3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C,
3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A,
3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A,
3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T,
3727_T|C, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3844_G|A, 3850_C|T, 3860_G|A,
3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3928_T|C, 3931_T|C, 3934_G|A, 3947_ACC|GTT, 3953_T|C, 3955_G|A, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G,
3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G,
4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G,
4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4276_T|C, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A,
4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T,
4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4522_TC|CT, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A,
4606_G|A, 4610_A|G, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4654_C|T, 4663_C|A, 4667_T|C, 4669_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4720_A|G,
4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|G,
4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T,
4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T,
5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T,
5197_C|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C,
5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C,
5437_T|C, 5443_C|A, 5449_T|C, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C,
5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5620_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G,
5740_G|A, 5760_GA|AG, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G,
5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T,
6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C,
6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C,
6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A,
6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6541_G|A, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C,
6622_A|G, 6625_AC|GT, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A,
6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A,
6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6946_T|C, 6957_CTT|TCG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T,
7009_A|T, 7012_G|C, 7015_C|T, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G,
7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T,
7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A,
7459_T|C, 7463_T|C, 7480_CC|GT, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7612_A|C, 7624_A|G, 7634_C|A,
7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T,
7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7873_C|T, 7879_G|A,
7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G,
8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8048_G|A, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A,
8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|C, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G,
8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T,
8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8407_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T,
8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8500_G|A, 8504_.|C, 8507, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8545_C|T, 8554_C|T, 8560_C|T, 8566_T|C,
8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|C, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C,
8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_A|G, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8874_A|T, 8884_A|G, 8911_G|A,
8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C,
9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9196_C|T, 9199_A|G, 9212_A|C, 9214_G|A,
9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A,
9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G,
9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C,
9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9775_T|C,
9778_C|T, 9787_C|T, 9796_A|G, 9799_G|A, 9817_G|A, 9823_G|A, 9832_C|T, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9880_C|T, 9883_C|T, 9898_A|G,
9904_T|A, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A,
10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C,
10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_GC|AT, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T,
10315_T|C, 10330_C|T, 10333_G|C, 10336_A|G, 10338_TG|CC, 10348_T|C, 10351_C|T, 10373_T|C, 10382, 10384_.|T, 10386_A|G, 10389_CAC|TTT, 10393_GGTGG|TACAT, 10432_T|A, 10437_C|T, 10442_C|A,
10454_G|A, 10459_G|A, 10463_T|A, 10465_A|C, 10469_TGA|CAC, 10482_GGGA|CACG, 10510_A|C, 10512_T|C, 10515_A|C, 10519_A|G, 10521_T|G, 10523_A|T, 10525_AC|GT, 10531_GA|AG, 10535_T|A, 10549_C|A,
10562_T|C, 10565_C|T, 10605_A|C, 10607_C|T, 10612_G|T, 10635_G|A, 10639_C|T, 10644_A|G, 10647_C|T, 10658_AG|CA, 10662_C|T, 10681_CT|TC, 10783_C|T, 10785_C|G, 10788_C|T, 10794_C|G, 10799_G|A
Case 3 (A.1): ON022406.1
| Target: 835 samples | Number of changes: 1418 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1406-1407 | BC BR coord: 10239 - 10240 |
| Direction L1: >> | Initial region span: 1-1405,1407-1418 | Gap history (edge excluded): 1405-1407 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 6.90e-194 | Rec. model vs L2: 6.56e-91 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1405 |
199.542525 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1405 |
43.609731 |
33.609731 |
2798.780539 |
1.897973e-68 |
|
* |
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1407 |
1.062794 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|C, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 700_C|T, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G,
823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C,
943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A,
1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1162_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G,
1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C,
1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C,
1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A,
1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T,
1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G,
1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C,
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9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A,
9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C,
9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T,
10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A,
10231_C|T, 10240_TT|CA, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): MH030079.1
| Target: 835 samples | Number of changes: 1426 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1354-1355 | BC BR coord: 9761 - 9762 |
| Direction L1: >> | Initial region span: 1-1353,1355-1426 | Gap history (edge excluded): 1353-1355 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 8.55e-194 | Rec. model vs L2: 3.79e-26 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1353 |
183.149928 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1282 |
130.448659 |
118.340691 |
2481.318618 |
1.571518e-24 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1355 |
5.430981 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 597_A|G, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T,
664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G,
823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C,
943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A,
1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA,
1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C,
1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A,
1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C,
1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C,
1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C,
1843_G|C, 1849_C|T, 1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C,
1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T,
2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C,
2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G,
2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T,
2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C,
2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G,
2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C,
2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C,
3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G,
3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T,
3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C,
3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C,
3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G,
3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT,
3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T,
3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C,
4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C,
4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG,
4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T,
4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T, 4525_GC|AT, 4531_C|T, 4540_G|C,
4544_C|T, 4549_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A,
4667_T|C, 4669_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4762_C|T, 4765_G|A,
4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A,
4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T,
4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G,
5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A,
5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A,
5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G,
5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T,
5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A,
5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C,
5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A,
6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C,
6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G,
6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG,
6517_C|T, 6523_T|C, 6527_T|C, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T,
6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G,
6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A,
6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G,
7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C,
7216_C|T, 7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C,
7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G,
7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G,
7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7738_G|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C,
7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T,
7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G,
8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A,
8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G,
8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A,
8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG,
8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T,
8566_T|C, 8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A,
8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C,
8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A,
9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C,
9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9227_T|C, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G,
9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G,
9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A,
9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G,
9754_T|C, 9762_AT|GC, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T,
9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C,
10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G,
10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A,
10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10303_C|T
Case 3 (A.1): MH030081.1
| Target: 835 samples | Number of changes: 1426 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1365-1366 | BC BR coord: 9858 - 9859 |
| Direction L1: >> | Initial region span: 1-1352,1395-1426 | Gap history (edge excluded): 1352-1395 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.54e-194 | Rec. model vs L2: 4.38e-20 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1352 |
172.021033 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1281 |
130.055802 |
118.206923 |
2511.586154 |
2.152655e-20 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1395 |
2.652835 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_TC|CT, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C,
2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C,
2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG,
2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C,
2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G,
2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C,
2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C,
2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C,
2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G,
3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T,
3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C,
3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C,
3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T,
3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G,
3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C,
3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T,
4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A,
4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C,
4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A,
4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C,
4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A, 4667_T|C, 4669_G|A,
4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C,
4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A,
4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C,
5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A,
5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C,
5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C,
5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C,
5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT,
5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C,
5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G,
5974_T|C, 5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T,
6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A,
6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C,
6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C,
6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T,
6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G,
6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A,
6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G,
7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T,
7228_G|A, 7231_C|T, 7234_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C,
7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G,
7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G,
7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC,
7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C,
7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T,
8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T,
8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T,
8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8323_C|T, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C,
8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG,
8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T,
8566_T|C, 8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A,
8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C,
8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A,
9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C,
9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9227_T|C, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G,
9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G,
9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A,
9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G,
9754_T|C, 9762_AT|GC, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T,
9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10010_G|A, 10018_A|G,
10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C,
10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G,
10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10303_C|T
Case 3 (A.1): MH030082.1
| Target: 835 samples | Number of changes: 1427 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1395-1396 | BC BR coord: 10103 - 10104 |
| Direction L1: >> | Initial region span: 1-1351,1396-1427 | Gap history (edge excluded): 1351-1396 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 3.67e-194 | Rec. model vs L2: 4.32e-26 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1351 |
192.281803 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1280 |
140.904756 |
112.204749 |
2579.590503 |
1.789690e-24 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1396 |
2.652835 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
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9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T,
9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C,
9762_AT|GC, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T,
9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10010_G|A, 10018_A|G,
10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10080_A|G, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA,
10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C,
10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10303_C|T
Case 3 (A.1): ON022378.1
| Target: 835 samples | Number of changes: 1426 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1394-1395 | BC BR coord: 10103 - 10104 |
| Direction L1: >> | Initial region span: 1-1350,1395-1426 | Gap history (edge excluded): 1350-1395 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 8.71e-193 | Rec. model vs L2: 1.80e-11 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1350 |
170.168975 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1279 |
139.984958 |
122.07406 |
2561.85188 |
2.634719e-15 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1395 |
3.264396 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C,
2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C,
2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG,
2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C,
2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G,
2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C,
2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C,
2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C,
2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G,
3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T,
3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C,
3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C,
3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G,
3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G,
3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C,
3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C,
4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C,
4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T,
4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T,
4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C,
4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A, 4667_T|C, 4669_G|A, 4678_C|T,
4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C,
4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G,
4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T,
5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G,
5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T,
5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T,
5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G,
5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G,
5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G,
5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C,
5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T,
6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C,
6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C,
6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6529_CC|TT,
6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C,
6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA,
6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T,
6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T,
7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A,
7231_C|T, 7234_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G,
7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A,
7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC,
7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T,
7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A,
7918_A|G, 7920_AG|GA, 7936_CA|TC, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T,
8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T,
8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T,
8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G,
8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA,
8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C,
8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T,
8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T,
8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G,
9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C,
9214_G|A, 9217_T|G, 9227_T|C, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T,
9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C,
9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T,
9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C,
9762_AT|GC, 9772_C|T, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G,
9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10010_G|A,
10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA,
10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C,
10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022397.1
| Target: 835 samples | Number of changes: 1362 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1350-1351 | BC BR coord: 10239 - 10240 |
| Direction L1: >> | Initial region span: 1-1349,1351-1362 | Gap history (edge excluded): 1349-1351 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 6.93e-194 | Rec. model vs L2: 1.06e-86 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1349 |
191.105532 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1349 |
44.561821 |
34.561821 |
2792.876359 |
2.271513e-64 |
|
* |
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1351 |
1.062794 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|C, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 700_C|T, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G,
823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C,
943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A,
1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1162_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G,
1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C,
1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C,
1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A,
1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T,
1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G,
1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C,
1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T,
2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C,
2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G,
2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T,
2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C,
2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G,
2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C,
2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C,
3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3097_CT|TC, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G,
3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G,
3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT,
3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T,
3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C,
4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C,
4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG,
4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T,
4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T, 4525_GC|AT, 4531_C|T, 4540_G|C,
4544_C|T, 4549_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A,
4667_T|C, 4669_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4765_G|A, 4769_T|C,
4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G,
4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4948_C|T, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C,
4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A,
5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A,
5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G,
5359_T|C, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G,
5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5533_C|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT,
5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C,
5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C,
5977_C|T, 5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T,
6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C,
6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C,
6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6530_C|T,
6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_CA|TG, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A,
6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T,
6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G,
6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T,
7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|A,
7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT,
7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C,
7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C,
7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G,
7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG,
7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G,
8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T,
8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C,
8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T,
8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A,
8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T,
8605_T|C, 8608_T|G, 8611_T|G, 8614_T|C, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A,
8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A,
8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C,
9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A,
9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T,
9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G,
9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A,
9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A,
9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G,
9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A,
10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T,
10240_TT|CA, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): OQ714299.1
| Target: 835 samples | Number of changes: 791 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 319-320, 335-336 | BC BR coord: 2973 - 2974, 6141 - 6142 |
| Direction L1: >> | Initial region span: 1-319,320-335,336-791 | Gap history (edge excluded): 319-336 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 4.70e-30 | |
| Rec. model vs L1: 6.75e-46 | Rec. model vs L2: 1.89e-31 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
319 |
24.894939 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
289 |
24.789598 |
30.66971 |
1856.66058 |
0.001333 |
* |
|
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
320 |
16.899144 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
336 |
-0.078392 |
-53.630086 |
1051.260173 |
2.339969e-31 |
|
|
|
| A.1.NmC2 |
0 |
336 |
-0.133378 |
-78.391678 |
1100.783357 |
4.131225e-42 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
336 |
12.394609 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A,
2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C,
2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A,
2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A,
2727_.|C, 2734, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G,
2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 5575_T|G, 5584_A|G, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5644_T|G,
5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5716_G|A, 5737_C|G, 5740_G|A, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C,
6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G,
6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG,
6517_C|T, 6523_T|C, 6527_T|C, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_AC|GT, 6625_A|G, 6631_A|G,
6634_G|T, 6643_C|T, 6673_T|C, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6811_A|G, 6814_A|G,
6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6934_G|A, 6940_C|T,
6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T,
7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A,
7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C,
7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C,
7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G,
7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A,
7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G,
7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA,
8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T,
8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T,
8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G,
8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C,
8983_G|A, 9010_A|G, 9016_G|A, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C,
9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C,
9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T,
9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A,
9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C,
9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G,
10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A,
10222_C|T, 10228_C|A, 10231_C|T
Case 3 (A.1): ON022629.1
| Target: 835 samples | Number of changes: 1372 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1340-1341 | BC BR coord: 10125 - 10126 |
| Direction L1: >> | Initial region span: 1-1340,1342-1372 | Gap history (edge excluded): 1340-1342 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.42e-193 | Rec. model vs L2: 1.09e-04 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1340 |
128.739198 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1339 |
110.290312 |
109.279474 |
2587.441051 |
3.536954e-09 |
|
* |
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1342 |
3.144366 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C,
2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C,
2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG,
2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C,
2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G,
2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C,
2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C,
2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2929_G|A, 2932_G|A,
2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C,
3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G,
3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG,
3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T,
3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G,
3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G,
3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C,
3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C,
4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C,
4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T,
4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4762_C|T, 4765_G|A,
4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A,
4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T,
4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G,
5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5220_C|T,
5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T,
5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A,
5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T,
5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A,
5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T,
5941_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A,
6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C,
6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G,
6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG,
6517_C|T, 6523_T|C, 6527_T|C, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6605_C|T, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G,
6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G,
6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6919_G|A,
6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7063_A|G, 7066_C|T,
7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T,
7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C,
7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G,
7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G,
7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC,
7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C,
7915_G|A, 7918_A|G, 7920_AG|GA, 7936_CA|TC, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T,
8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C,
8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A,
8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C,
8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG,
8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T,
8566_T|C, 8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A,
8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C,
8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A,
9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C,
9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG,
9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T,
9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G,
9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C,
9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G,
9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G,
10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10126_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA,
10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C,
10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022623.1
| Target: 835 samples | Number of changes: 1371 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1339-1340 | BC BR coord: 10103 - 10104 |
| Direction L1: >> | Initial region span: 1-1295,1340-1371 | Gap history (edge excluded): 1295-1340 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 8.66e-193 | Rec. model vs L2: 5.40e-10 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1295 |
141.006860 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1224 |
118.633365 |
100.722467 |
2600.555066 |
6.494925e-12 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1340 |
3.264396 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
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5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C,
5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A,
5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T,
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7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T,
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8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C,
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9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G,
9212_A|C, 9214_G|A, 9217_T|G, 9227_T|C, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG,
9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T,
9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G,
9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C,
9762_AT|GC, 9772_C|T, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G,
9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10010_G|A,
10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA,
10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C,
10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022280.1
| Target: 835 samples | Number of changes: 1418 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1344-1345 | BC BR coord: 9771 - 9772 |
| Direction L1: >> | Initial region span: 1-1334,1351-1418 | Gap history (edge excluded): 1334-1351 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.82e-191 | Rec. model vs L2: 5.94e-99 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1334 |
188.556288 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
686 |
40.491389 |
15.833993 |
2706.332015 |
1.003548e-71 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1351 |
3.641583 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A,
961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A,
1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T,
1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T,
1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G,
1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C,
1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A,
1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A,
1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G,
2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G,
2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A,
2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G,
2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A,
2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C,
2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C,
2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G,
2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T,
3094_C|T, 3097_CT|TC, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C,
3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3292_C|T, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG,
3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G,
3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|A, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G,
3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C,
3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C,
3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A,
3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T,
4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C,
4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A,
4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A,
4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C,
4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A, 4667_T|C, 4669_G|A, 4678_C|T,
4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C,
4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A,
4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4948_C|T, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C,
5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G,
5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T,
5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5368_C|T,
5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T,
5497_T|C, 5500_G|A, 5530_A|T, 5533_C|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G,
5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T,
5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C,
5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A,
6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C,
6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G,
6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T,
6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_CA|TG, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T,
6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T,
6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T,
6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T,
7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_GC|TT, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|A, 7247_T|A,
7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G,
7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T,
7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C,
7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A,
7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7874_C|T, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG,
7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G,
8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T,
8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C,
8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T,
8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A,
8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T,
8605_T|C, 8608_T|G, 8611_T|G, 8614_T|C, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A,
8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A,
8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C,
9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A,
9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T,
9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G,
9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A,
9658_C|T, 9670_C|T, 9674_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9811_C|T,
9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C,
9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G,
10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T,
10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10303_C|T
Case 3 (A.1): MK249066.1
| Target: 835 samples | Number of changes: 1414 | |
| BC: A.1.NmC2 + A.1 + A.1.NmC2 | BC BR: 616-617, 654-655 | BC BR coord: 4530 - 4531, 4734 - 4735 |
| Direction L1: >> | Initial region span: 1-615,634-654,655-1414 | Gap history (edge excluded): 615-655 -> 615-634 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.22e-94 | |
| Rec. model vs L1: 1.02e-121 | Rec. model vs L2: 6.99e-25 | |
| Flags: Model_2BP_Best | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
615 |
61.250827 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
353 |
22.719302 |
18.72236 |
2818.55528 |
6.893979e-37 |
|
|
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
634 |
9.476815 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
655 |
-0.212890 |
-209.660278 |
523.320555 |
7.733672e-95 |
|
|
|
| A.1.NmC2 |
0 |
655 |
-0.407381 |
-208.608694 |
521.217389 |
2.210014e-94 |
|
|
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
655 |
50.732782 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A,
1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T,
1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T,
1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G,
1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T,
1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C,
1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T,
1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_TT|CC, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G,
2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A,
2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T,
2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C,
2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C,
2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T,
2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2736_ATG|GCA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A,
2788_G|A, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T,
2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A,
3091_C|T, 3094_C|T, 3097_CT|TC, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C,
3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG,
3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G,
3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|A, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G,
3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C,
3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C,
3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A,
3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T,
4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C,
4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A,
4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A,
4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T, 4525_GC|AT, 4531_C|A, 4533_T|A, 4540_G|C, 4544_C|T, 4548_T|A, 4552_T|C,
4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4632_A|T, 4634_GA|CC, 4637_G|T, 4641_TTTATG|GCGCCA, 4648, 4651_A|T,
4655_CC|TG, 4657_.|C, 4658_G|T, 4662_C|A, 4664_4665, 4667, 4668_TG|GA, 4671_GG|CT, 4711_G|C, 4713_T|C, 4715_C|G, 4717_CA|TC, 4720_A|G, 4722_T|A, 4728_AT|TC, 4735_AA|GC, 4741_A|G, 4744_T|C,
4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T,
4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4948_C|T, 4954_T|G,
4957_C|T, 4960_T|C, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T,
5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T,
5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C,
5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C,
5437_T|C, 5443_C|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5533_C|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G,
5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A,
5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5926_T|G, 5929_C|T, 5932_C|A,
5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T,
6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G,
6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6280_C|T, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T,
6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T,
6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G,
6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T,
6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G,
6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C,
7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G,
7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|A, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C,
7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G,
7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7504_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A,
7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C,
7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T,
7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G,
8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A,
8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G,
8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A,
8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG,
8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C,
8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C,
8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A,
8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C,
9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G,
9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC,
9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G,
9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A,
9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A,
9835_A|G, 9838_A|C, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G,
9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G,
10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C,
10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G
Case 3 (A.1): OQ714323.1
| Target: 835 samples | Number of changes: 827 | |
| BC: A.1 + A.1.NmC1 | BC BR: 277-278 | BC BR coord: 5133 - 5134 |
| Direction L1: << | Initial region span: 1-119,278-827 | Gap history (edge excluded): 119-278 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 3.00e-24 | Rec. model vs L2: 1.21e-26 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
120 |
9.152208 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
278 |
30.091746 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 218_A|G, 225_A|G, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T,
724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C,
856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C,
1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C,
1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A,
1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T,
1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G,
3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C,
3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G,
3346_C|T, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A,
3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G,
3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C,
3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3829_A|G, 3832_A|C,
3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A,
3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C,
5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT,
5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A,
5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5584_A|G, 5590_T|C,
5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T,
5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A,
5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6034_C|T, 6037_C|T, 6047_T|C, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T,
6106_C|T, 6115_T|A, 6127_A|G, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C,
6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G,
6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G,
6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T,
6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T,
6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C,
7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A,
7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T,
7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C,
7463_T|C, 7480_C|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G,
7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC,
7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C,
7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T,
8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8965_C|T, 8968_A|G, 8971_A|G,
8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T,
9169_T|C, 9172_CT|TC, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T,
9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C,
9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C,
9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A,
9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C,
9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T,
10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C,
10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C,
10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C, 10330_C|T
Case 3 (A.1): ON022672.1
| Target: 835 samples | Number of changes: 1214 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1120-1121 | BC BR coord: 9211 - 9212 |
| Direction L1: >> | Initial region span: 1-987,1121-1214 | Gap history (edge excluded): 987-1121 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.57e-193 | Rec. model vs L2: 2.07e-06 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
987 |
98.470518 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1067 |
81.262823 |
70.263539 |
2425.472921 |
1.078802e-10 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1121 |
7.941879 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C,
2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C,
2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG,
2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2356_T|C,
2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C,
2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T,
2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A,
2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A,
2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G,
3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C,
3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3319_CAA|AGG,
3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G,
3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G,
3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G,
3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A,
3814_T|C, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T,
3961_C|G, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C,
4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T,
4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G,
4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T,
4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C,
4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A,
5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T,
5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A,
5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G,
5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A,
5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T,
6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G,
6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A,
6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C,
6478_T|A, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6605_C|T,
6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T,
6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T,
6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T,
7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G,
7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T,
7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C,
7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T,
7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C,
7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A,
7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7936_CA|TC, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G,
7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A,
8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A,
8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T,
8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8743_G|A, 8746_A|G, 8749_T|C,
8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T,
8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A,
9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C,
9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9778_C|T,
9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A,
9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10036_GA|TG, 10051_G|A, 10066_G|A,
10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A,
10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022260.1
| Target: 835 samples | Number of changes: 1412 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1390-1391 | BC BR coord: 10179 - 10180 |
| Direction L1: >> | Initial region span: 1-1390,1392-1412 | Gap history (edge excluded): 1390-1392 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 5.25e-195 | Rec. model vs L2: 1.22e-86 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1390 |
173.622145 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
686 |
30.102630 |
28.514738 |
2786.970523 |
9.587364e-64 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1392 |
1.295326 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
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9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C,
9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T,
9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T,
9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C,
9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG,
10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10180_C|T, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G,
10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10303_C|T
Case 3 (A.1): ON022586.1
| Target: 835 samples | Number of changes: 1426 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1325-1326 | BC BR coord: 9558 - 9559 |
| Direction L1: >> | Initial region span: 1-1324,1329-1426 | Gap history (edge excluded): 1324-1329 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.02e-211 | Rec. model vs L2: 1.31e-20 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1324 |
192.328452 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1426 |
151.948546 |
143.569567 |
2372.860865 |
8.346748e-22 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1329 |
9.425631 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C,
2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C,
2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG,
2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C,
2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G,
2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C,
2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C,
2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C,
2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G,
3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T,
3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C,
3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C,
3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T,
3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G,
3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C,
3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T,
4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A,
4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C,
4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A,
4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C,
4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A, 4667_T|C, 4669_G|A,
4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G,
4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T,
4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C,
4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A,
5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A,
5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G,
5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C,
5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T,
5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C,
5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A,
5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T,
6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T,
6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C,
6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C,
6527_T|C, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G,
6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G,
6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A,
6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G,
7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T,
7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G,
7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A,
7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC,
7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T,
7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A,
7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G,
8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G,
8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C,
8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8311_C|T, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G,
8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA,
8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C,
8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T,
8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C,
8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G,
9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G,
9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T,
9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C,
9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9558_.|C, 9560_TC|CG, 9563_G|C, 9566, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T,
9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G,
9772_C|T, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T,
9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C,
10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G,
10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A,
10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022657.1
| Target: 835 samples | Number of changes: 1424 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1392-1393 | BC BR coord: 10125 - 10126 |
| Direction L1: >> | Initial region span: 1-1392,1394-1424 | Gap history (edge excluded): 1392-1394 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.42e-193 | Rec. model vs L2: 3.69e-12 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1392 |
177.585894 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1391 |
142.069340 |
141.058503 |
2521.882995 |
1.372126e-16 |
|
* |
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1394 |
3.144366 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C,
2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C,
2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG,
2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C,
2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G,
2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C,
2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C,
2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2929_G|A, 2932_G|A,
2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C,
3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G,
3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG,
3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T,
3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G,
3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G,
3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C,
3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C,
4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C,
4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T,
4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T,
4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C,
4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A, 4667_T|C, 4669_G|A, 4678_C|T,
4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C,
4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A,
4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C,
5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A,
5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C,
5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C,
5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C,
5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT,
5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C,
5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5968_G|A, 5971_A|G, 5974_T|C,
5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T,
6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C,
6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C,
6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6529_CC|TT,
6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C,
6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA,
6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G,
6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T,
7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T,
7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT,
7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C,
7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C,
7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G,
7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7936_CA|TC,
7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A,
8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155,
8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A,
8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T,
8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A,
8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A,
8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A,
8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T,
8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C,
9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T,
9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G,
9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C,
9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A,
9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T, 9796_A|G,
9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T,
9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A,
10066_G|A, 10096_A|G, 10111_C|T, 10126_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G,
10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G,
10309_C|T
Case 3 (A.1): ON502396.1
| Target: 835 samples | Number of changes: 1379 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1345-1346 | BC BR coord: 10103 - 10104 |
| Direction L1: >> | Initial region span: 1-1345,1347-1379 | Gap history (edge excluded): 1345-1347 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 7.47e-192 | Rec. model vs L2: 2.95e-86 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1345 |
149.725818 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
234 |
22.027855 |
4.749548 |
2812.500904 |
1.091836e-63 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1347 |
3.144771 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
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9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T,
9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A,
9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G,
9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10105_C|T, 10111_C|T,
10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A,
10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C
Case 3 (A.1): ON022450.1
| Target: 835 samples | Number of changes: 1369 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1295-1296 | BC BR coord: 9771 - 9772 |
| Direction L1: >> | Initial region span: 1-1285,1302-1369 | Gap history (edge excluded): 1285-1302 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.31e-190 | Rec. model vs L2: 2.76e-89 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1285 |
162.718625 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
686 |
40.575595 |
7.197761 |
2719.604478 |
2.960760e-64 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1302 |
4.253144 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A,
961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A,
1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T,
1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T,
1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G,
1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T,
1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C,
1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T,
1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C,
2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C,
2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T,
2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T,
2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T,
2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A,
2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A,
2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T,
2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A,
3091_C|T, 3094_C|T, 3097_CT|TC, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C,
3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3292_C|T, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C,
3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C,
3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|A, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G,
3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G,
3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C,
3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C,
4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C,
4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T,
4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T,
4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C,
4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A, 4667_T|C, 4669_G|A, 4678_C|T,
4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C,
4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A,
4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4948_C|T, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C,
5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G,
5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T,
5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5368_C|T,
5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T,
5497_T|C, 5500_G|A, 5530_A|T, 5533_C|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G,
5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T,
5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C,
5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A,
6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C,
6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G,
6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T,
6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_CA|TG, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T,
6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T,
6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T,
6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T,
7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_GC|TT, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|A, 7247_T|A,
7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G,
7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T,
7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C,
7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A,
7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C,
7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T,
8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A,
8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C,
8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A,
8401_T|C, 8404_C|T, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T,
8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G,
9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C,
9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A,
9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T,
9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C,
9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9674_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G,
9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9811_C|T, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G,
9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C,
10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G,
10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A,
10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022471.1
| Target: 835 samples | Number of changes: 1314 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1240-1241 | BC BR coord: 9771 - 9772 |
| Direction L1: >> | Initial region span: 1-1099,1247-1314 | Gap history (edge excluded): 1099-1247 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.31e-190 | Rec. model vs L2: 1.07e-82 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1099 |
120.618988 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
403 |
38.262350 |
-25.664998 |
2787.329996 |
9.069666e-58 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1247 |
4.253144 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A,
961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A,
1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T,
1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T,
1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G,
1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T,
1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C,
1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T,
1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C,
2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C,
2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T,
2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T,
2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T,
2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A,
2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A,
2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T,
2974_AT|GC, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A,
3091_C|T, 3094_C|T, 3097_CT|TC, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C,
3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3292_C|T, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C,
3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C,
3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|A, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T,
3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G,
3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C,
3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T,
4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A,
4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C,
4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4762_C|T,
4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A,
4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4948_C|T, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4972_G|A, 4984_A|T,
4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G,
5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A,
5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5346_G|A, 5359_T|C,
5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A,
5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5533_C|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G,
5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G,
5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T,
5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T,
6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A,
6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A,
6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G,
6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_CA|TG, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G,
6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G,
6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG,
6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T,
7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_GC|TT, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|A,
7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT,
7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C,
7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C,
7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G,
7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG,
7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G,
8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T,
8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C,
8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8341_A|G, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T,
8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C,
8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A,
9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C,
9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG,
9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T,
9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G,
9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9674_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G,
9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9811_C|T, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G,
9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T,
10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA,
10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C,
10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022479.1
| Target: 835 samples | Number of changes: 1270 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1199-1200 | BC BR coord: 9771 - 9772 |
| Direction L1: >> | Initial region span: 1-1189,1206-1270 | Gap history (edge excluded): 1189-1206 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.10e-190 | Rec. model vs L2: 7.22e-82 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1189 |
108.637334 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
403 |
38.580206 |
-30.043282 |
2792.086565 |
6.063883e-57 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1206 |
3.487295 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A,
961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A,
1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T,
1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T,
1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G,
1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T,
1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C,
1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T,
1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C,
2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C,
2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T,
2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T,
2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T,
2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A,
2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A,
2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T,
2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A,
3091_C|T, 3094_C|T, 3097_CT|TC, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C,
3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3292_C|T, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C,
3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C,
3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|A, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T,
3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G,
3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C,
3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T,
4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A,
4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C,
4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4762_C|T,
4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A,
4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4948_C|T, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4972_G|A, 4984_A|T,
4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G,
5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C,
5500_G|A, 5530_A|T, 5533_C|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C,
5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C,
5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G,
5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A,
6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G,
6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C,
6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C,
6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_CA|TG, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T,
6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T,
6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C,
6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A,
7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_GC|TT, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|A, 7247_T|A, 7255_TT|CC,
7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T,
7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527,
7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C,
7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A,
7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C,
7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T,
8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A,
8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C,
8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A,
8401_T|C, 8404_C|T, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T,
8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G,
9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C,
9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A,
9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T,
9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C,
9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9674_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G,
9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9811_C|T, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G,
9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C,
10030_A|G, 10036_GA|TG, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10186_G|T,
10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10281_A|G,
10297_A|G, 10309_C|T
Case 3 (A.1): MK882619.1
| Target: 835 samples | Number of changes: 1314 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1240-1241 | BC BR coord: 9771 - 9772 |
| Direction L1: >> | Initial region span: 1-1230,1247-1314 | Gap history (edge excluded): 1230-1247 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.83e-191 | Rec. model vs L2: 2.55e-81 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1230 |
123.257254 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
403 |
38.580206 |
-14.065922 |
2760.131844 |
2.362606e-56 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1247 |
3.641583 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A,
961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A,
1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T,
1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T,
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9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9811_C|T, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G,
9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T,
10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA,
10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C,
10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10303_C|T
Case 3 (A.1): ON502401.1
| Target: 835 samples | Number of changes: 1304 | |
| BC: A.1.NmC1 + A.1.NmC2 + A.1.NmC1 | BC BR: 104-105, 856-857 | BC BR coord: 942 - 943, 7026 - 7027 |
| Direction L1: << | Initial region span: 1-32,170-856,857-1304 | Gap history (edge excluded): 32-857 -> 32-170 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 3.61e-29 | |
| Rec. model vs L1: 2.87e-40 | Rec. model vs L2: 4.32e-177 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
32 |
3.70441 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
170 |
0.984845 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
835 |
856 |
0.521783 |
-53.336107 |
1886.672215 |
1.797742e-18 |
|
|
|
| A.1.NmC1 |
0 |
801 |
-4.021368 |
-81.960052 |
1943.920103 |
6.653466e-31 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
857 |
31.002145 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
170 |
8.662182 |
-11.173684 |
1202.347368 |
8.614407e-11 |
|
|
|
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 437_A|G, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C,
493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 641_C|T, 649_G|A,
655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A,
802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T,
934_G|C, 943_AC|GT, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C,
1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G,
1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1239_A|G, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G,
1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1446_C|T, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G,
1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T,
1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C,
1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T,
1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C,
2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C,
2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T,
2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T,
2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T,
2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2593_A|G, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G,
3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T,
3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_A|G, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C,
3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C,
3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G,
3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT,
3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T,
3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C,
4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C,
4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG,
4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4381_C|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA,
4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4804_T|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T,
4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T,
4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T,
5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C,
5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT,
5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A,
5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T,
5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|C, 5605_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A,
5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5791_T|C, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A,
5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C,
6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A,
6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G,
6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA,
6454_G|A, 6457_A|G, 6460_T|C, 6466_G|A, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6520_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A,
6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C,
6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T,
6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T,
6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7024_T|C, 7027_T|C, 7039_T|C, 7046_T|C, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G,
7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A,
7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T,
7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C,
7579_TC|CT, 7597_A|T, 7600_C|T, 7606_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG,
7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A,
7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A,
7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G,
8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T,
8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T,
8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A,
8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC,
8524_C|T, 8526_A|G, 8536_C|T, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT,
8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT,
8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G,
8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T,
9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T,
9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C,
9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C,
9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9691_C|T, 9694_C|T,
9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A,
9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C,
9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG,
10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A,
10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C, 10330_C|T
Case 3 (A.1): ON502405.1
| Target: 835 samples | Number of changes: 1426 | |
| BC: A.1.NmC2 + A.1 + A.1.NmC2 | BC BR: 104-105, 175-176 | BC BR coord: 942 - 943, 1467 - 1468 |
| Direction L1: << | Initial region span: 1-32,152-175,176-1426 | Gap history (edge excluded): 32-176 -> 32-152 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 4.18e-16 | |
| Rec. model vs L1: 3.37e-25 | Rec. model vs L2: 5.13e+08 | |
| Flags: Model_2BP_Best | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
32 |
-1.303814 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
152 |
1.387974 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
158 |
-8.266271 |
-42.750935 |
235.501870 |
3.023852e-18 |
|
|
|
| A.1.NmC1 |
0 |
158 |
-8.295882 |
-43.705505 |
237.411009 |
1.163615e-18 |
|
|
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
176 |
78.701023 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
980 |
30.792154 |
-11.668504 |
2845.337009 |
1.404902e-29 |
|
|
|
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 437_A|G, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C,
493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 641_C|T, 649_G|A,
655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A,
802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T,
934_G|C, 943_AC|GT, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C,
1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G,
1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1288_.|A, 1292_C|T, 1294_A|G, 1298_G|T, 1301, 1302_A|G, 1327_A|G, 1330_C|T,
1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1446_C|T, 1468_A|G, 1474_C|T,
1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T,
1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T,
1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T,
1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G,
1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G,
2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG,
2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G,
2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T,
2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2593_A|G, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C,
2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A,
2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G,
2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G,
3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C,
3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C,
3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_A|G, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A,
3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA,
3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G,
3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C,
3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C,
3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C,
4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T,
4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_CC|TT, 4267_T|A,
4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4381_C|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T,
4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T,
4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4573_T|C, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T,
4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A, 4667_T|C, 4669_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C,
4753_C|T, 4756_G|A, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4804_T|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A,
4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C,
4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A,
5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C,
5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T,
5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C,
5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G,
5590_T|C, 5602_A|C, 5605_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T,
5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T,
5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C,
6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C,
6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C,
6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C,
6493_A|G, 6508_AA|GG, 6517_C|T, 6520_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G,
6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T,
6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T,
6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7024_T|C, 7027_T|C,
7039_T|C, 7046_T|C, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A,
7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G,
7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C,
7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7606_C|T, 7612_A|C, 7624_A|G, 7634_C|A,
7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T,
7760_A|C, 7762_G|A, 7765_TT|CC, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T,
7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G,
8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A,
8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G,
8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A,
8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG,
8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C,
8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C,
8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G,
8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C,
9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A,
9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A,
9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G,
9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C,
9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9691_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T,
9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T,
9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G,
10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G,
10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA,
10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C, 10330_C|T
Case 3 (A.1): ON022587.1
| Target: 835 samples | Number of changes: 1427 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1401-1402 | BC BR coord: 10140 - 10141 |
| Direction L1: >> | Initial region span: 1-1400,1402-1427 | Gap history (edge excluded): 1400-1402 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.31e-193 | Rec. model vs L2: 2.60e-39 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1400 |
153.646748 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1227 |
97.912349 |
71.432409 |
2679.135181 |
4.339343e-32 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1402 |
2.542314 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 509_T|C, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T,
664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G,
823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_T|C, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C,
2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C,
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9754_T|C, 9762_A|G, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G,
9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G,
10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AAAA|GGGG, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G,
10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A,
10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022503.1
| Target: 835 samples | Number of changes: 1285 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1211-1212 | BC BR coord: 9771 - 9772 |
| Direction L1: >> | Initial region span: 1-1201,1218-1285 | Gap history (edge excluded): 1201-1218 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.33e-190 | Rec. model vs L2: 7.90e-82 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1201 |
112.728508 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
403 |
38.580206 |
-25.862402 |
2783.724803 |
6.668202e-57 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1218 |
4.253144 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A,
961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A,
1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T,
1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T,
1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G,
1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T,
1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C,
1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T,
1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C,
2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C,
2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T,
2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T,
2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T,
2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A,
2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A,
2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T,
2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A,
3091_C|T, 3094_C|T, 3097_CT|TC, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C,
3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3292_C|T, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C,
3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C,
3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|A, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T,
3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G,
3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C,
3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T,
4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A,
4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C,
4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4762_C|T,
4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A,
4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4948_C|T, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4972_G|A, 4984_A|T,
4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G,
5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5359_T|C, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A,
5410_T|G, 5413_T|C, 5431_T|C, 5437_T|C, 5443_C|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5533_C|T, 5536_A|C, 5539_G|T, 5542_T|G,
5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A,
5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C,
5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T,
6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G,
6182_A|C, 6187_A|G, 6190_A|G, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C,
6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A,
6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C,
6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_CA|TG, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A,
6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A,
6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C,
7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T,
7156_T|C, 7171_GC|TT, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|A, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T,
7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T,
7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C,
7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C,
7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C,
7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C,
7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C,
8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A,
8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C,
8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T,
8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C,
8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A,
9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G,
9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C,
9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C,
9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T,
9670_C|T, 9674_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9811_C|T, 9817_G|A,
9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C,
9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T,
10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A,
10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022491.1
| Target: 835 samples | Number of changes: 1188 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1114-1115 | BC BR coord: 9771 - 9772 |
| Direction L1: >> | Initial region span: 1-1104,1121-1188 | Gap history (edge excluded): 1104-1121 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.33e-190 | Rec. model vs L2: 2.29e-85 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1104 |
69.460442 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
362 |
17.179250 |
-73.118778 |
2882.237555 |
1.233598e-58 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1121 |
4.253144 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A,
961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A,
1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1172_C|A, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T,
1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T,
1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G,
1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T,
1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C,
1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T,
1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C,
2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C,
2116_A|G, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C,
2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G,
2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A,
2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T,
2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3097_CT|TC, 3100_G|A,
3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T,
3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3292_C|T, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G,
3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G,
3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|A, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC,
3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 4013_T|C, 4018_T|C,
4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G,
4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A,
4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A,
4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G,
4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4948_C|T,
4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T,
5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5458_A|G, 5470_C|A,
5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5533_C|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T,
5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A,
5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C,
5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A,
6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6211_C|T, 6220_T|C, 6223_G|A,
6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG,
6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T,
6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_CA|TG, 6664_A|G,
6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G,
6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A,
6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G,
7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_GC|TT, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T,
7225_A|T, 7228_G|A, 7240_C|A, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G,
7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7426_CC|TT, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A,
7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC,
7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T,
7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A,
7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G,
8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G,
8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C,
8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A,
8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G,
8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A,
9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C,
9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T,
9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C,
9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C,
9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9674_C|T, 9679_C|T, 9694_C|T,
9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9811_C|T, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A,
9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C,
9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG,
10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A,
10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022473.1
| Target: 835 samples | Number of changes: 1322 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1248-1249 | BC BR coord: 9771 - 9772 |
| Direction L1: >> | Initial region span: 1-1120,1255-1322 | Gap history (edge excluded): 1120-1255 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.33e-190 | Rec. model vs L2: 7.71e-90 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1120 |
143.329043 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
682 |
38.846920 |
-21.065495 |
2778.13099 |
5.490564e-65 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1255 |
4.253144 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C, 826_A|G,
829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A, 961_T|C,
964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A,
1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T,
1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T,
1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G,
1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T,
1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C,
1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T,
1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C,
2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C,
2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T,
2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T,
2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T,
2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A,
2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A,
2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T,
2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A,
3091_C|T, 3094_C|T, 3097_CT|TC, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C,
3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3292_C|T, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C,
3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C,
3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|A, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T,
3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G,
3802_T|C, 3805_G|A, 3814_T|C, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A,
3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C,
4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A,
4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A,
4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A,
4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C, 4557_GG|AA,
4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A, 4667_T|C, 4669_G|A, 4678_C|T, 4681_G|A,
4684_A|G, 4699_A|G, 4711_G|C, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C,
4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A,
4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4948_C|T, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T,
5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T,
5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5533_C|T, 5536_A|C, 5539_G|T, 5542_T|G,
5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A,
5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A,
5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G,
6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A,
6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A,
6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C,
6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T,
6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_CA|TG, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA,
6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T,
6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T,
7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G,
7144_C|T, 7156_T|C, 7171_GC|TT, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|A, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T,
7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C,
7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T,
7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C,
7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A,
7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G,
7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G,
8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT,
8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G,
8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G,
8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C,
8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|T, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A,
9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G,
9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C,
9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C,
9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T,
9670_C|T, 9674_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9811_C|T, 9817_G|A,
9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C,
9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T,
10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A,
10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON502410.1
| Target: 835 samples | Number of changes: 1109 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1077-1078 | BC BR coord: 10128 - 10129 |
| Direction L1: >> | Initial region span: 1-1076,1078-1109 | Gap history (edge excluded): 1076-1078 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.71e-191 | Rec. model vs L2: 3.88e-68 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1076 |
55.592362 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
234 |
22.027855 |
-63.464956 |
2946.929911 |
4.345255e-48 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1078 |
2.748883 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_TT|CC, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C,
2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C,
2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG,
2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C,
2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C,
2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2595_CC|GT, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T,
2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A,
2788_G|A, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C,
3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G,
3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C,
3484_T|C, 3490_G|C, 3496_C|A, 3502_T|A, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA,
3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T,
4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C,
4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G,
4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A,
4375_G|C, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T,
4756_G|A, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC,
4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4948_C|T, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C,
4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A,
5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5431_T|C, 5437_T|C, 5443_C|A, 5458_A|G, 5470_C|A,
5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5533_C|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T,
5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A,
5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6205_C|T, 6211_C|T, 6220_T|C, 6223_G|A,
6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG,
6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T,
6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A,
6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G,
7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T,
7228_G|A, 7240_C|A, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C,
7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C,
7498_A|G, 7501_G|A, 7504_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC,
7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T,
7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A,
7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G,
8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G,
8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C,
8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A,
8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T,
8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G,
8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T,
9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C,
9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G,
9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G,
9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T,
9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G,
10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_GA|AG, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G,
10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA,
10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C, 10330_C|T
Case 3 (A.1): ON022502.1
| Target: 835 samples | Number of changes: 1310 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1236-1237 | BC BR coord: 9771 - 9772 |
| Direction L1: >> | Initial region span: 1-1226,1243-1310 | Gap history (edge excluded): 1226-1243 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.31e-190 | Rec. model vs L2: 6.97e-84 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1226 |
112.639209 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
403 |
38.580206 |
-30.683451 |
2797.366903 |
5.856315e-59 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1243 |
4.253144 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A,
961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A,
1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T,
1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T,
1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G,
1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T,
1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C,
1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T,
1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C,
2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C,
2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T,
2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T,
2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T,
2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A,
2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A,
2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T,
2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A,
3091_C|T, 3094_C|T, 3097_CT|TC, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C,
3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3292_C|T, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C,
3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C,
3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|A, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T,
3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G,
3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C,
3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T,
4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A,
4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C,
4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4762_C|T,
4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A,
4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4948_C|T, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4972_G|A, 4984_A|T,
4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G,
5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5230_C|G,
5246_T|C, 5257_C|T, 5260_G|A, 5284_G|A, 5287_T|C, 5297_C|T, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5359_T|C, 5368_C|T, 5380_A|G, 5383_T|A,
5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A,
5530_A|T, 5533_C|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T,
5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A,
5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 5992_C|T,
6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A,
6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A,
6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A,
6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A,
6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_CA|TG, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C,
6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T,
6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A,
6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT,
7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_GC|TT, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|A, 7247_T|A, 7255_TT|CC, 7258_A|G,
7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G,
7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G,
7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A,
7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7766_T|C, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G,
7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG,
7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C,
8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G,
8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T,
8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T,
8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A,
8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C,
9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G,
9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC,
9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G,
9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T,
9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9674_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T,
9796_A|G, 9799_GC|AT, 9811_C|T, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G,
9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G,
10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G,
10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G,
10309_C|T
Case 3 (A.1): ON022482.1
| Target: 835 samples | Number of changes: 1315 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1241-1242 | BC BR coord: 9771 - 9772 |
| Direction L1: >> | Initial region span: 1-1231,1248-1315 | Gap history (edge excluded): 1231-1248 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.31e-190 | Rec. model vs L2: 8.91e-82 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1231 |
124.153416 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
403 |
38.580206 |
-14.321906 |
2760.643811 |
7.480879e-57 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1248 |
4.253144 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A,
961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A,
1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T,
1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T,
1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G,
1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T,
1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C,
1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T,
1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C,
2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C,
2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T,
2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T,
2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T,
2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A,
2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A,
2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T,
2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A,
3091_C|T, 3094_C|T, 3097_CT|TC, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C,
3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3292_C|T, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C,
3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C,
3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|A, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T,
3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G,
3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C,
3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T,
4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A,
4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C,
4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4762_C|T,
4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A,
4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4948_C|T, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4972_G|A, 4984_A|T,
4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G,
5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A,
5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A,
5350_A|G, 5359_T|C, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C,
5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5533_C|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T,
5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C,
5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G,
5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T,
6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A,
6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C,
6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C,
6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_CA|TG, 6664_A|G, 6667_C|T, 6673_T|C,
6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA,
6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T,
6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T,
7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_GC|TT, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T,
7228_G|A, 7240_C|A, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C,
7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C,
7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G,
7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A,
7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G,
7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA,
8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T,
8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T,
8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C,
8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A,
8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010,
9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC,
9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG,
9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT,
9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A,
9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9674_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC,
9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9811_C|T, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG,
9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T,
10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C,
10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C,
10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022499.1
| Target: 835 samples | Number of changes: 1229 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1155-1156 | BC BR coord: 9771 - 9772 |
| Direction L1: >> | Initial region span: 1-1145,1162-1229 | Gap history (edge excluded): 1145-1162 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.31e-190 | Rec. model vs L2: 2.11e-80 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1145 |
93.288711 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
362 |
27.435197 |
-42.016247 |
2816.032495 |
1.781009e-55 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1162 |
4.253144 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A,
961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A,
1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T,
1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T,
1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G,
1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T,
1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C,
1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T,
1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C,
2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C,
2116_A|G, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C,
2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G,
2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A,
2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T,
2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3097_CT|TC, 3100_G|A,
3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T,
3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3292_C|T, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G,
3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G,
3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|A, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC,
3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T,
3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3829_A|G, 3832_A|C,
3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3982_C|G,
3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G,
4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT,
4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A,
4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C,
4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G,
4930_G|T, 4932_G|A, 4939_G|A, 4948_C|T, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T,
5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA,
5155_C|T, 5164_T|C, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5533_C|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G,
5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A,
5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T,
5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C,
6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G,
6190_A|G, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T,
6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T,
6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G,
6631_A|G, 6634_G|T, 6643_CA|TG, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G,
6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G,
6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C,
7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C,
7171_GC|TT, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|A, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA,
7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A,
7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G,
7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A,
7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A,
7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G,
8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A,
8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G,
8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T,
8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A,
8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG,
8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G,
9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G,
9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G,
9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C,
9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T,
9674_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9811_C|T, 9817_G|A, 9823_G|A,
9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G,
9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A,
10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T,
10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022511.1
| Target: 835 samples | Number of changes: 1137 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1040-1041 | BC BR coord: 9211 - 9212 |
| Direction L1: >> | Initial region span: 1-909,1041-1137 | Gap history (edge excluded): 909-1041 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.01e-190 | Rec. model vs L2: 1.62e-70 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
909 |
77.287336 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
427 |
21.086610 |
-53.64312 |
2693.28624 |
9.063494e-50 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1041 |
4.877995 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 700_C|T, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G,
823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C,
943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A,
1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1162_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G,
1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C,
1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C,
1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A,
1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T,
1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G,
1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C,
1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T,
2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A,
2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C,
2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C,
2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G,
2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T,
3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C,
3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G,
3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A,
3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|A, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G,
3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G,
4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC,
4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A,
4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T,
4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T,
4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A,
4939_G|A, 4948_C|T, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T,
5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C,
5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5533_C|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C,
5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T,
5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T,
5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C,
6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6211_C|T,
6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C,
6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G,
6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T,
6643_CA|TG, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G,
6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G,
6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C,
7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G,
7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|A, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C,
7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G,
7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G,
7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A,
7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T,
7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7936_CA|TC, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G,
8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A,
8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G,
8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A,
8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8815_AC|GT,
8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C,
8983_G|A, 9010_A|G, 9016_G|A, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C,
9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T,
9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G,
9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G,
9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G,
10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C,
10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022433.1
| Target: 835 samples | Number of changes: 1316 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1248-1249 | BC BR coord: 9798 - 9799 |
| Direction L1: >> | Initial region span: 1-1148,1249-1316 | Gap history (edge excluded): 1148-1249 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 3.50e-191 | Rec. model vs L2: 3.64e-84 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1148 |
162.587117 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
685 |
50.232219 |
11.514426 |
2720.971149 |
6.266862e-62 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1249 |
4.253144 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G,
2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A,
2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T,
2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C,
2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C,
2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T,
2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A,
2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A,
2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G,
3079_G|A, 3091_C|T, 3094_C|T, 3097_CT|TC, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C,
3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C,
3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C,
3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|A, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T,
3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G,
3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C,
3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T,
4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A,
4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C,
4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A,
4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C,
4552_T|C, 4557_GG|AA, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A, 4667_T|C, 4669_G|A, 4678_C|T,
4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C,
4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G,
4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4948_C|T, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T,
5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A,
5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5257_C|T,
5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5335_C|T, 5338_C|T, 5344_G|A, 5346_G|A, 5359_T|C, 5368_C|T, 5380_A|G, 5383_T|A,
5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A,
5530_A|T, 5533_C|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T,
5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A,
5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5929_C|T, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5977_C|T, 5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6034_C|T,
6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6160_G|A, 6174_A|G, 6187_A|G,
6190_A|G, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T,
6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T,
6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G,
6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T,
6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A,
6931_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T,
7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T,
7225_A|T, 7228_G|A, 7240_C|A, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G,
7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T,
7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G,
7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G,
8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A,
8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A,
8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C,
8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T,
8782_G|A, 8788_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T,
8968_A|G, 8971_A|G, 8980_T|C, 9010_A|G, 9016_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C,
9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T,
9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C,
9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C,
9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A,
9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9798_AGC|TAT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG,
9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T,
10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C,
10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C,
10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022316.1
| Target: 835 samples | Number of changes: 1082 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 939-940 | BC BR coord: 9243 - 9244 |
| Direction L1: >> | Initial region span: 1-923,941-1082 | Gap history (edge excluded): 923-941 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.79e-186 | Rec. model vs L2: 5.50e-23 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
923 |
60.925910 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
388 |
31.701376 |
2.394769 |
2571.210462 |
1.428367e-18 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
941 |
14.303485 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T, 358_T|C,
361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C,
498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C,
670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C, 826_A|G,
829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A,
961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A,
1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T,
1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T,
1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G,
1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T,
1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C,
1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T,
1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G,
2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A,
2112_G|C, 2116_A|G, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G,
2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G,
2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C,
2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G,
2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C,
3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G,
3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T,
4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T,
4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A,
4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C,
4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A,
4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T,
5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A,
5127_C|G, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T,
5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C,
5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C,
5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C,
6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A,
6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G,
6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA,
6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G,
6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T,
6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T,
6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T,
6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|T, 7114_CC|TT, 7117_T|G,
7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C,
7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C,
7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G,
7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG,
7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A,
7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A,
7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G,
8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T,
8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T,
8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 9142_A|G,
9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9227_T|C, 9232_C|T, 9244_C|G, 9259_G|A, 9265_C|A, 9274_A|G,
9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C,
9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C,
9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T,
9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G,
9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T,
9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G,
10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C,
10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022449.1
| Target: 835 samples | Number of changes: 1413 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1346-1347 | BC BR coord: 9824 - 9825 |
| Direction L1: >> | Initial region span: 1-1346,1348-1413 | Gap history (edge excluded): 1346-1348 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.25e-191 | Rec. model vs L2: 1.55e-95 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1346 |
199.437504 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1339 |
41.947622 |
39.799577 |
2670.400846 |
4.669054e-70 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1348 |
4.118566 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 700_C|T, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G,
823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C,
943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A,
1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1162_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G,
1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C,
1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C,
1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C,
1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C,
1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C,
1843_G|C, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C,
2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C,
2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG,
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9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G,
10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A,
10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022593.1
| Target: 835 samples | Number of changes: 1426 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1414-1415 | BC BR coord: 10239 - 10240 |
| Direction L1: >> | Initial region span: 1-1413,1415-1426 | Gap history (edge excluded): 1413-1415 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 6.90e-194 | Rec. model vs L2: 8.74e-40 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1413 |
186.975443 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1224 |
127.745185 |
103.67427 |
2638.651461 |
1.466272e-32 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1415 |
1.062794 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A,
1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T,
1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T,
1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G,
1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T,
1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C,
1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T,
1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1993_T|C, 2003_A|G, 2008_T|C,
2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C,
2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T,
2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T,
2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T,
2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A,
2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A,
2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T,
2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A,
3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C,
3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG,
3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G,
3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G,
3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C,
3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3775_C|T, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G,
3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C,
3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C,
4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C,
4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T,
4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T,
4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C,
4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A, 4667_T|C, 4669_G|A, 4678_C|T,
4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C,
4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A,
4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C,
5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A,
5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C,
5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C,
5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C,
5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT,
5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C,
5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G,
5974_T|C, 5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T,
6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A,
6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C,
6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C,
6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T,
6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G,
6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A,
6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G,
7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T,
7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G,
7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A,
7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC,
7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T,
7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A,
7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G,
8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G,
8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C,
8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A,
8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T,
8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8569_C|A,
8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A,
8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8770_C|T, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C,
8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G,
9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G,
9212_A|C, 9214_G|A, 9217_T|G, 9227_T|C, 9232_C|T, 9244_C|G, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG,
9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T,
9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G,
9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C,
9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G,
9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G,
10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C,
10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_TT|CC, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G,
10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022312.1
| Target: 835 samples | Number of changes: 1427 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1415-1416 | BC BR coord: 10239 - 10240 |
| Direction L1: >> | Initial region span: 1-1414,1416-1427 | Gap history (edge excluded): 1414-1416 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 6.90e-194 | Rec. model vs L2: 8.07e-40 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1414 |
187.212365 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1225 |
127.899302 |
103.828387 |
2638.343227 |
1.353539e-32 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1416 |
1.062794 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1993_T|C, 2003_A|G,
2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A,
2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T,
2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C,
2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C,
2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T,
2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A,
2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A,
2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G,
3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C,
3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C,
3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C,
3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T,
3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3775_C|T, 3781_GC|AT, 3784_C|G,
3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C,
3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C,
4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA,
4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A,
4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G,
4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T,
4549_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A, 4667_T|C,
4669_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4762_C|T, 4765_G|A, 4769_T|C,
4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G,
4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C,
4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G,
5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G,
5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A,
5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A,
5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T,
5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T,
5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C,
5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G,
6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A,
6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG,
6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T,
6523_T|C, 6527_T|C, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T,
6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G,
6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A,
6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T,
7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T,
7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C,
7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G,
7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G,
7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC,
7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C,
7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T,
8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T,
8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T,
8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G,
8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA,
8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C,
8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T,
8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8770_C|T, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C,
8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A,
9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C,
9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9227_T|C, 9232_C|T, 9244_C|G, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G,
9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G,
9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A,
9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G,
9754_T|C, 9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A,
9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T,
10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA,
10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_TT|CC, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C,
10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022465.1
| Target: 835 samples | Number of changes: 1351 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1345-1346 | BC BR coord: 10269 - 10270 |
| Direction L1: >> | Initial region span: 1-1345,1347-1351 | Gap history (edge excluded): 1345-1347 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.99e-194 | Rec. model vs L2: 1.59e-75 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1345 |
158.001586 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
404 |
38.639230 |
31.456643 |
2807.086715 |
1.102059e-55 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1347 |
0.422097 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G,
2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A,
2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T,
2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C,
2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C,
2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T,
2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A,
2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A,
2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G,
3079_G|A, 3091_C|T, 3094_C|T, 3097_CT|TC, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C,
3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C,
3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C,
3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|A, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T,
3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G,
3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C,
3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T,
4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A,
4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4288_AC|GA, 4306_T|C,
4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4762_C|T,
4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A,
4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4948_C|T, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4972_G|A, 4984_A|T,
4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G,
5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G,
5239_T|A, 5246_T|C, 5251_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5297_C|T, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5338_C|T, 5359_T|C, 5368_C|T, 5380_A|G, 5383_T|A,
5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A,
5530_A|T, 5533_C|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T,
5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A,
5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 5992_C|T,
6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A,
6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A,
6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A,
6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A,
6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C,
6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T,
6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T,
6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G,
7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|A, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A,
7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T,
7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C,
7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C,
7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A,
7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C,
7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC,
8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G,
8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G,
8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G,
8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8536_C|T,
8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8632_A|C, 8650_G|A, 8656_A|G,
8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8839_T|A, 8848_C|T, 8851_A|C,
8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A,
9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C,
9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG,
9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T,
9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G,
9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C,
9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G,
9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C,
10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G,
10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A,
10270_T|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022394.1
| Target: 835 samples | Number of changes: 1372 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1340-1341 | BC BR coord: 10103 - 10104 |
| Direction L1: >> | Initial region span: 1-1338,1341-1372 | Gap history (edge excluded): 1338-1341 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 8.71e-193 | Rec. model vs L2: 1.88e-65 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1338 |
58.679633 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
32 |
3.704410 |
-68.736985 |
2975.47397 |
9.341108e-52 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1341 |
3.264396 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 437_A|G, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C,
493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 641_C|T, 649_G|A,
655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A,
802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T,
934_G|C, 943_AC|GT, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C,
1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G,
1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C,
1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1446_C|T, 1468_A|G, 1474_C|T, 1482_TC|CT,
1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A,
1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C,
1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G,
1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C,
1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T,
2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T,
2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G,
2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T,
2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C,
2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G,
2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C,
2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C,
3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G,
3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T,
3308_A|G, 3310_CA|TG, 3319_CAA|AGG, 3331_A|G, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_A|G, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T,
3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T,
3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G,
3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C,
3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T,
4045_T|C, 4048_C|T, 4054, 4055_T|C, 4059_.|G, 4066_C|T, 4081_T|C, 4087_T|C, 4091_G|A, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA,
4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A,
4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4381_C|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T,
4420_A|G, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4804_T|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A,
4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C,
4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A,
5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T,
5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C,
5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A,
5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C,
5602_A|C, 5605_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A,
5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C,
5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A,
6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T,
6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C,
6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G,
6508_AA|GG, 6517_C|T, 6520_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G,
6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G,
6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G,
6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7024_T|C, 7027_T|C, 7039_T|C,
7046_T|C, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G,
7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C,
7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G,
7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7606_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A,
7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C,
7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T,
7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7936_CA|TC, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G,
8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A,
8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T,
8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T,
8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T,
8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T,
8566_T|C, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A,
8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8826_A|G, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C,
8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G,
9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G,
9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T,
9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C,
9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T,
9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9691_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C,
9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G,
9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C,
10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10090_C|T, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C,
10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G,
10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022291.1
| Target: 835 samples | Number of changes: 1425 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1324-1325 | BC BR coord: 9558 - 9559 |
| Direction L1: >> | Initial region span: 1-1323,1328-1425 | Gap history (edge excluded): 1323-1328 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.02e-211 | Rec. model vs L2: 2.30e-20 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1323 |
191.548202 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1425 |
151.838177 |
143.459199 |
2373.081603 |
1.631153e-21 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1328 |
9.425631 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C,
2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C,
2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG,
2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C,
2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G,
2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C,
2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C,
2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C,
2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G,
3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T,
3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C,
3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C,
3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G,
3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G,
3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C,
3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C,
4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C,
4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T,
4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T,
4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C,
4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A, 4667_T|C, 4669_G|A, 4678_C|T,
4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C,
4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A,
4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C,
5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A,
5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C,
5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C,
5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C,
5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT,
5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C,
5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G,
5974_T|C, 5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T,
6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A,
6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C,
6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C,
6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T,
6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G,
6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A,
6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G,
7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T,
7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G,
7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A,
7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC,
7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T,
7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A,
7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G,
8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G,
8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C,
8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8311_C|T, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G,
8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA,
8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C,
8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T,
8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C,
8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G,
9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G,
9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T,
9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C,
9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9558_.|C, 9560_TC|CG, 9563_G|C, 9566, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T,
9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G,
9772_C|T, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T,
9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C,
10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G,
10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A,
10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022293.1
| Target: 835 samples | Number of changes: 1426 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1325-1326 | BC BR coord: 9558 - 9559 |
| Direction L1: >> | Initial region span: 1-1324,1329-1426 | Gap history (edge excluded): 1324-1329 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.02e-211 | Rec. model vs L2: 6.14e-27 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1324 |
180.046744 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1426 |
131.477969 |
123.098991 |
2417.802019 |
2.315504e-25 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1329 |
9.425631 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_T|C, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A,
961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A,
1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T,
1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T,
1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G,
1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T,
1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C,
1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T,
1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G,
2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A,
2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T,
2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C,
2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C,
2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T,
2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A,
2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A,
2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G,
3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C,
3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C,
3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C,
3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T,
3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G,
3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C,
3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T,
4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A,
4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C,
4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A,
4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C,
4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A, 4667_T|C, 4669_G|A,
4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G,
4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T,
4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C,
4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A,
5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A,
5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G,
5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C,
5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T,
5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C,
5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A,
5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T,
6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T,
6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C,
6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C,
6527_T|C, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G,
6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G,
6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A,
6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G,
7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T,
7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G,
7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A,
7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC,
7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T,
7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A,
7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G,
8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G,
8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C,
8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8311_C|T, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G,
8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA,
8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C,
8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T,
8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C,
8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G,
9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G,
9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|G, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T,
9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C,
9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9558_.|C, 9560_TC|CG, 9563_G|C, 9566, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T,
9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G,
9772_C|T, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T,
9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C,
10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G,
10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A,
10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022294.1
| Target: 835 samples | Number of changes: 1425 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1324-1325 | BC BR coord: 9558 - 9559 |
| Direction L1: >> | Initial region span: 1-1323,1328-1425 | Gap history (edge excluded): 1323-1328 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.02e-211 | Rec. model vs L2: 1.83e-20 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1323 |
191.902318 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1425 |
151.850261 |
143.471283 |
2373.057435 |
1.155216e-21 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1328 |
9.425631 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G,
2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A,
2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T,
2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C,
2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C,
2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T,
2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A,
2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A,
2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G,
3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C,
3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C,
3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C,
3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T,
3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G,
3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C,
3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T,
4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A,
4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C,
4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A,
4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C,
4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A, 4667_T|C, 4669_G|A,
4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G,
4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T,
4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C,
4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A,
5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A,
5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G,
5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C,
5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T,
5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C,
5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A,
5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T,
6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T,
6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C,
6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C,
6527_T|C, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G,
6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G,
6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A,
6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G,
7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T,
7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G,
7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A,
7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC,
7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T,
7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A,
7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G,
8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G,
8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C,
8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8311_C|T, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G,
8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA,
8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C,
8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T,
8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C,
8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G,
9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G,
9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T,
9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C,
9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9558_.|C, 9560_TC|CG, 9563_G|C, 9566, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T,
9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G,
9772_C|T, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T,
9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C,
10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G,
10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A,
10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022733.1
| Target: 835 samples | Number of changes: 1104 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 985-986 | BC BR coord: 8649 - 8650 |
| Direction L1: >> | Initial region span: 1-905,986-1104 | Gap history (edge excluded): 905-986 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 7.61e-193 | Rec. model vs L2: 7.15e-55 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
905 |
76.262878 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
363 |
27.494221 |
-22.79997 |
2503.59994 |
4.553147e-39 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
986 |
2.719489 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G,
2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A,
2112_G|C, 2116_A|G, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G,
2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G,
2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C,
2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G,
2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3097_CT|TC,
3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G,
3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G,
3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G,
3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|A, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC,
3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 4013_T|C, 4018_T|C,
4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G,
4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A,
4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A,
4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T,
4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4948_C|T, 4954_T|G,
4957_C|T, 4960_T|C, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T,
5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5458_A|G, 5470_C|A, 5473_T|C,
5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5533_C|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T,
5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T,
5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A,
5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G,
6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T,
6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C,
6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C,
6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T,
6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G,
6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6940_C|T,
6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T,
7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A,
7240_C|A, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT,
7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A,
7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G,
7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C,
7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA,
7936_CA|TC, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA,
8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T,
8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T,
8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C,
8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A,
9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A,
9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G,
9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C,
9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T,
9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G,
9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G
Case 3 (A.1): ON022286.1
| Target: 835 samples | Number of changes: 1429 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1405-1406 | BC BR coord: 10161 - 10162 |
| Direction L1: >> | Initial region span: 1-1405,1406-1429 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 9.80e-200 | Rec. model vs L2: 5.86e-46 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1405 |
185.668543 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1227 |
118.166136 |
102.980304 |
2618.039392 |
1.225150e-36 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1406 |
2.26753 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G,
946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C,
2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C,
2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG,
2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C,
2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G,
2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2677_C|T,
2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T,
2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A,
2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C,
3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G,
3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG,
3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T,
3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T,
3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G,
3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C,
3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T,
4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A,
4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C,
4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A,
4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C,
4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A, 4667_T|C, 4669_G|A,
4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G,
4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T,
4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C,
4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A,
5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A,
5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G,
5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C,
5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T,
5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C,
5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A,
5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T,
6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T,
6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C,
6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C,
6527_T|C, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G,
6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G,
6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A,
6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G,
7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T,
7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G,
7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7408_T|C, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G,
7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G,
7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC,
7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C,
7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T,
8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T,
8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T,
8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G,
8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA,
8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C,
8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T,
8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8770_C|T, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C,
8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A,
9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C,
9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9227_T|C, 9232_C|T, 9244_C|G, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G,
9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G,
9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A,
9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G,
9754_T|C, 9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A,
9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T,
10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA,
10162_TC|CT, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C,
10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022304.1
| Target: 835 samples | Number of changes: 1426 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1325-1326 | BC BR coord: 9558 - 9559 |
| Direction L1: >> | Initial region span: 1-1324,1329-1426 | Gap history (edge excluded): 1324-1329 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.02e-211 | Rec. model vs L2: 3.08e-27 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1324 |
190.145693 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1426 |
141.838177 |
133.459199 |
2395.081603 |
3.003047e-25 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1329 |
9.425631 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 284_T|C, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A,
354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C,
493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T,
664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G,
823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C,
943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A,
1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA,
1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C,
1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A,
1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C,
1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C,
1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C,
1843_G|C, 1849_C|T, 1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C,
1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T,
2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C,
2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G,
2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T,
2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C,
2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G,
2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C,
2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C,
3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G,
3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T,
3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C,
3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C,
3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A,
3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G,
3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C,
3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C,
4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA,
4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A,
4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G,
4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A, 4523_C|T, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T,
4549_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4663_C|A, 4667_T|C,
4669_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4717_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4762_C|T, 4765_G|A, 4769_T|C,
4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G,
4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C,
4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G,
5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G,
5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A,
5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A,
5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T,
5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T,
5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C,
5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G,
6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A,
6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG,
6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T,
6523_T|C, 6527_T|C, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T,
6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G,
6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A,
6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T,
7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T,
7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C,
7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G,
7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G,
7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC,
7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C,
7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T,
8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T,
8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T,
8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8311_C|T, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C,
8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG,
8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T,
8566_T|C, 8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A,
8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C,
8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A,
9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C,
9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG,
9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T,
9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9558_.|C, 9560_TC|CG, 9563_G|C, 9566, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G,
9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C,
9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G,
9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G,
10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C,
10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G,
10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): ON022549.1
| Target: 835 samples | Number of changes: 976 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 392-393 | BC BR coord: 3273 - 3274 |
| Direction L1: >> | Initial region span: 1-392,463-976 | Gap history (edge excluded): 392-463 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 9.56e-206 | Rec. model vs L2: 1.15e-17 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
392 |
35.361495 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
866 |
15.505745 |
4.134899 |
867.730202 |
2.748874e-14 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
463 |
30.231489 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 195_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 297_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G,
352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT,
488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A,
655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A,
802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T,
934_G|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C,
1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1141_G|A, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G,
1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C,
1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C,
1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1537_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A,
1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C,
1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G,
1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G,
1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G,
2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C,
2524_C|T, 2527_T|A, 2545_G|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T,
2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A,
2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A,
2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G,
3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C,
3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C,
4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G,
4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T,
5038_C|A, 5041_C|T, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G,
5152_TG|CA, 5155_C|T, 5164_T|C, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G,
5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A,
5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5809_T|A, 5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C,
5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T,
6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C,
6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C,
6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C,
6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6526_GT|TC, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T,
6619_T|C, 6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA,
6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T,
6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T,
7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G,
7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T,
7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C,
7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T,
7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C,
7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A,
7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7936_CA|TC, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G,
7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A,
8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A,
8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T,
8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8743_G|A, 8749_T|C, 8755_G|A,
8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A,
8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C,
9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C,
9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9778_C|T, 9787_C|T,
9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A,
9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G
Case 3 (A.1): OP508603.1
| Target: 835 samples | Number of changes: 640 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 284-285, 451-452 | BC BR coord: 3333 - 3334, 8058 - 8059 |
| Direction L1: << | Initial region span: 1-283,438-451,452-640 | Gap history (edge excluded): 283-452 -> 283-438 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.37e-16 | |
| Rec. model vs L1: 4.93e-33 | Rec. model vs L2: 3.70e-24 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
283 |
17.900145 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
438 |
8.346988 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
452 |
-0.092719 |
-35.987005 |
1419.974009 |
9.245313e-19 |
|
|
|
| A.1.NmC2 |
0 |
452 |
-0.103621 |
-71.530620 |
1491.061239 |
3.380059e-34 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
452 |
21.058802 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 327_A|G, 346_A|G, 352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C,
467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 535_C|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T,
610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C,
766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA,
1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A,
1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G,
1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G,
1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A,
1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T,
2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G,
2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2242_T|C, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C,
2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2863_A|G, 2878_A|G,
2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T,
3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T,
3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3333_.|T,
3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C,
4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A,
5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T,
6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C,
6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A,
6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6526_GT|TC, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6688_G|A, 6697_A|G,
6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G,
6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG,
6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C,
8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T,
8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G,
8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T,
8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G,
8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T,
8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G,
9277_C|T, 9280_T|G, 9295_G|A, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T,
9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A,
10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C,
10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C,
10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G
Case 3 (A.1): JF912179.1
| Target: 835 samples | Number of changes: 1448 | |
| BC: A.1.NmC2 + A.1 + A.1.NmC2 | BC BR: 18-19, 1434-1435 | BC BR coord: 321 - 322, 10532 - 10533 |
| Direction L1: >> | Initial region span: 1-18,1425-1434,1435-1448 | Gap history (edge excluded): 18-1435 -> 18-1425 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.93e-174 | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 1.19e-03 | |
| Flags: Model_2BP_Best | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
18 |
7.128718 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1425 |
3.072210 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1435 |
0.000000 |
-1977.895205 |
7279.790410 |
0.000000e+00 |
|
|
|
| A.1.NmC2 |
0 |
1434 |
-0.122999 |
-463.901573 |
4251.803146 |
2.929425e-174 |
|
|
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1435 |
-3.354312 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 80_A|G, 108_C|T, 118_C|A, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 280_CA|TG, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|T, 327_A|G,
346_A|G, 352_G|A, 358_T|C, 361_A|G, 363_G|A, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 424_C|T, 427_T|A, 432_T|C, 434_C|T, 448_C|T, 451_A|G, 455_T|C, 467_T|C,
473_ACG|GTT, 488_T|C, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 550_C|T, 556_G|T, 565_C|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C,
628_T|C, 649_G|A, 655_A|T, 664_T|A, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 706_T|C, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 763_T|C, 766_G|A, 775_C|T, 781_T|C,
784_G|A, 802_A|G, 811_T|C, 826_A|G, 829_G|A, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 859_G|A, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T,
934_G|C, 937_T|A, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1094_T|C,
1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1138_G|A, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|A, 1171_TC|CA, 1183_T|C, 1207_A|T, 1210_G|A, 1216_CC|TT, 1219_A|G, 1221_CT|AA,
1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1249_C|T, 1255_C|A, 1261_T|C, 1279_C|A, 1285_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1339_C|T, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|T, 1411_G|A, 1423_A|G, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1504_A|G,
1507_T|C, 1516_A|G, 1525_G|T, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1546_T|C, 1549_C|T, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1593_G|A, 1606_G|A, 1618_G|A, 1621_A|T, 1642_G|C,
1666_T|C, 1669_C|G, 1675_T|C, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1696_T|C, 1701_G|A, 1705_AC|GT, 1708_G|A, 1711_C|T, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|C, 1747_T|C, 1753_C|T,
1760_A|C, 1762_G|A, 1771_G|A, 1781_G|A, 1785_A|G, 1789_C|G, 1792_T|G, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1813_T|C, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_TT|CC, 1900_C|T, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1951_A|G, 1957_C|A, 1966_G|A, 1969_T|C, 1975_G|A,
1978_A|G, 1981_A|T, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2047_C|T, 2063_C|T, 2068_T|C, 2080_A|T, 2083_T|C,
2089_A|G, 2098_C|T, 2101_T|C, 2104_C|A, 2110_G|A, 2112_GA|CT, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|T, 2164_A|G, 2176_T|C, 2188_A|G, 2193_TG|CA, 2197_A|G, 2215_A|G,
2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_GC|AT, 2308_A|G, 2314_C|T, 2322_A|G,
2341_C|T, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2477_G|A, 2488_G|A,
2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2541_A|G, 2548_C|T, 2554_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G,
2611_G|A, 2621_C|T, 2623_A|G, 2626_T|C, 2632_T|C, 2638_C|T, 2641_T|G, 2644_G|A, 2650_G|A, 2686_TT|CC, 2695_A|G, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|T, 2725_G|A,
2728_TC|CT, 2734_G|A, 2737_TG|CA, 2752_A|G, 2755_T|A, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2794_T|C, 2812_G|A, 2821_G|A, 2827_C|T, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G,
2881_C|T, 2894_C|A, 2896_G|A, 2899_C|G, 2905_T|C, 2908_T|C, 2920_G|A, 2932_G|A, 2938_G|A, 2947_A|T, 2950_C|A, 2962_C|T, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3001_CT|TC, 3013_G|A,
3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3098_T|C, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3127_G|A, 3133_A|G,
3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3238_T|C, 3241_G|A, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A,
3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A,
3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3457_T|C, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C,
3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3601_G|A, 3604_T|C, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3628_A|C, 3632_C|T, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G,
3646_A|G, 3649_TC|CA, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3688_G|A, 3691_T|C, 3694_C|T, 3715_A|G, 3718_C|T, 3733_G|C, 3739_T|C, 3745_C|T, 3748_T|C, 3763_G|A,
3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3853_G|A, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3895_T|A, 3898_T|C, 3901_C|T, 3928_T|C,
3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4036_A|C, 4039_GG|CA, 4042_C|T, 4045_T|C, 4048_C|T,
4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4117_G|A, 4120_CT|AC, 4129_A|G, 4132_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G,
4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4264_C|T, 4267_T|A, 4273_GA|AG, 4276_T|C, 4285_A|G, 4289_C|A, 4306_T|C, 4309_C|T, 4333_A|T, 4336_G|A,
4345_G|A, 4351_T|A, 4360_A|T, 4372_G|A, 4375_G|T, 4381_C|T, 4384_C|T, 4387_G|A, 4393_C|T, 4409_G|A, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4453_A|G, 4480_C|T, 4483_GC|AT,
4495_T|C, 4498_G|A, 4504_CC|TA, 4510_T|C, 4519_T|C, 4522_TC|CT, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4547_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4576_G|A, 4583_T|C, 4585_G|T,
4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4654_C|T, 4663_C|A, 4667_T|C, 4669_G|A, 4672_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G,
4711_G|C, 4720_A|G, 4729_T|C, 4735_A|G, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4759_T|C, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4798_A|G, 4807_C|T,
4810_C|T, 4816_T|C, 4834_A|G, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4885_A|G, 4888_G|A, 4891_C|T, 4894_G|A, 4897_C|G, 4900_C|T, 4903_C|T, 4912_A|G,
4915_G|A, 4919_T|C, 4921_G|A, 4924_C|T, 4930_G|T, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4975_T|C, 4984_A|T, 4987_A|C, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A,
5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5053_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5125_G|A, 5134_A|G,
5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|C, 5207_T|C, 5215_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5257_C|T, 5260_G|A, 5269_T|C, 5284_G|A, 5287_T|C,
5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5314_C|T, 5323_T|C, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5359_T|C, 5362_C|T, 5368_C|T, 5374_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5393_T|C,
5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5446_T|C, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A,
5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5560_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5639_C|T, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G,
5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5791_T|C, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T,
5872_T|C, 5875_G|A, 5893_A|G, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 6004_T|C, 6023_A|G, 6025_T|C,
6031_C|A, 6034_C|T, 6037_C|T, 6043_C|T, 6047_T|C, 6065_T|C, 6067_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6113_G|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C,
6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6241_T|C, 6244_T|A, 6253_G|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6292_T|C, 6310_C|T, 6316_A|G,
6319_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6367_G|A, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6421_G|A, 6430_A|G, 6433_T|C, 6439_G|A,
6451_AG|GA, 6457_A|G, 6460_T|C, 6472_A|G, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6514_T|C, 6517_C|T, 6523_T|C, 6530_C|T, 6532_C|G, 6544_A|G, 6547_C|T, 6569_C|T,
6597_T|C, 6611_A|G, 6613_A|T, 6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6649_T|C, 6664_A|G, 6667_C|T, 6673_T|C, 6682_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T,
6745_T|C, 6748_C|T, 6757_TG|CA, 6766_C|A, 6772_C|T, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6818_T|A, 6823_C|T, 6826_A|G, 6835_A|G, 6841_A|T, 6844_C|T, 6847_C|T,
6850_T|C, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A,
6979_TC|CT, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7024_T|C, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7078_C|T, 7081_G|C, 7085_C|T, 7096_A|T, 7099_C|A,
7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7156_T|C, 7171_G|T, 7174_GC|AT, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G,
7267_C|T, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_T|A, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T,
7426_CC|TT, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7456_C|T, 7463_T|C, 7480_C|G, 7483_A|G, 7486_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7585_T|C,
7597_A|T, 7612_A|C, 7624_A|T, 7630_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7690_GT|AC, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A,
7738_G|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7768_G|A, 7771_C|T, 7792_G|A, 7798_G|T, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7837_G|A, 7849_C|T, 7861_T|A,
7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7906_C|T, 7915_G|A, 7918_A|G, 7921_G|A, 7924_A|G, 7936_C|T, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7963_C|T,
7966_T|C, 7969_G|A, 7990_TC|CT, 7996_A|G, 8011_C|T, 8023_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8053_A|G, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|TC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C,
8107_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8154_CT|GC, 8161_G|C, 8167_C|A, 8169_A|G, 8188_A|G, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T,
8251_A|G, 8254_G|T, 8263_C|T, 8275_G|A, 8281_C|T, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|A, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8362_G|A, 8374_T|C,
8377_A|G, 8380_T|A, 8383_A|C, 8392_C|T, 8395_G|T, 8398_G|A, 8404_C|T, 8407_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA,
8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8494_A|G, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8536_C|T, 8551_C|T, 8554_C|T, 8557_T|C, 8560_C|T, 8566_T|C, 8574_A|G, 8584_A|G,
8587_T|C, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8614_T|C, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8725_A|G,
8743_G|A, 8746_A|G, 8749_T|C, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_A|G, 8821_C|T, 8830_A|G, 8833_A|G, 8836_T|C, 8848_C|T, 8851_A|C, 8860_A|G, 8866_T|C, 8874_A|T, 8884_A|G,
8911_G|A, 8923_C|T, 8929_G|A, 8939_C|T, 8941_G|A, 8953_AA|GC, 8956_GAA|ACG, 8962_G|A, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8986_T|C, 9009_9010, 9017_.|AA, 9022_G|A, 9031_G|A, 9037_G|A,
9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9112_C|T, 9127_T|C, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C,
9199_A|G, 9205_G|A, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|A, 9295_G|A, 9298_C|T, 9313_C|T, 9319_T|C, 9324_AA|GG, 9328_A|G, 9331_G|A,
9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9364_C|T, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9448_G|A, 9454_A|G, 9460_T|C, 9463_T|C,
9466_TC|CT, 9472_C|T, 9485_T|C, 9490_A|G, 9497_T|C, 9499_G|A, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9566_C|T,
9574_G|A, 9577_G|T, 9590_A|G, 9595_G|A, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9619_G|A, 9625_G|A, 9637_C|T, 9643_T|C, 9646_G|T, 9658_C|T, 9670_C|T, 9679_C|T, 9691_C|T, 9703_C|A, 9709_TA|GC,
9718_C|T, 9745_G|A, 9749_A|G, 9754_T|C, 9763_T|C, 9766_G|A, 9769_C|T, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_G|A, 9817_G|A, 9823_G|A, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C,
9865_G|A, 9880_C|T, 9898_A|G, 9904_T|A, 9907_C|T, 9910_C|A, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9961_C|T, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T,
10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10051_G|A, 10066_G|A, 10072_C|T, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10140_AAA|GGG, 10144_A|G, 10148_A|C, 10153_TG|CA,
10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C,
10261_A|G, 10264_G|A, 10273_AC|GA, 10281_A|G, 10294_C|T, 10297_A|G, 10303_C|T, 10309_C|T, 10315_T|C, 10330_C|T, 10336_A|G, 10338_TG|CC, 10348_T|C, 10351_C|T, 10355_A|G, 10362, 10365_10366,
10368_10372, 10373_T|C, 10376_10379, 10382, 10385, 10391_10397, 10403_C|T, 10408_10416, 10418_C|T, 10421_A|T, 10423_10424, 10426_10430, 10435_10447, 10450_10460, 10465_10476, 10522,
10524_G|A, 10533_A|G, 10535_T|A, 10647_C|T, 10650_G|A, 10658_.|C, 10659_AG|CA, 10662_C|T, 10681_CT|TC, 10738_C|T, 10802_.|T, 10817, 10843_AT|TA, 10847_C|A, 10849_A|G
Case 3 (A.1): JF912181.1
| Target: 835 samples | Number of changes: 1485 | |
| BC: A.1 + A.1.NmC2 + A.1 | BC BR: 1440-1441, 1448-1449 | BC BR coord: 10314 - 10315, 10360 - 10361 |
| Direction L1: >> | Initial region span: 1-1440,1441-1447,1482-1485 | Gap history (edge excluded): 1440-1482 -> 1447-1482 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.01e-07 | |
| Rec. model vs L1: 2.37e+02 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1440 |
186.31803 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1447 |
7.581527 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1441 |
-0.119625 |
-30.914750 |
79.829500 |
4.214817e-13 |
|
|
|
| A.1 |
835 |
1441 |
-0.389802 |
-3.468032 |
24.936063 |
3.499377e-01 |
* |
|
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1482 |
-0.105637 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 80_A|G, 117_AC|TA, 130_T|C, 166_A|T, 171_G|A, 178_T|C, 226_C|T, 247_T|C, 262_C|T, 280_CA|TG, 283_T|C, 294_AA|GG, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 320_T|C, 327_AA|GG, 346_A|G, 349_C|A,
352_G|A, 361_A|G, 363_G|A, 367_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 430_T|A, 433_TC|CT, 442_G|T, 445_A|C, 448_C|T, 451_A|G, 454_TT|CC, 457_G|T, 464_C|A, 467_T|C, 475_G|T,
488_T|C, 496_G|C, 499_A|G, 501_AC|GT, 509_T|C, 515_C|T, 517_A|G, 523_G|A, 538_C|T, 547_A|C, 556_G|T, 568_C|T, 577_A|C, 584_T|C, 589_A|T, 596_T|A, 598_C|T, 604_C|T, 607_A|G, 610_C|T, 613_A|C,
628_T|C, 634_T|C, 649_G|A, 655_A|T, 664_T|A, 670_C|T, 676_C|T, 682_G|A, 691_C|T, 697_A|G, 700_C|T, 703_A|T, 709_T|C, 718_C|T, 724_725, 727_728, 732_736, 747_.|GTCTAGAAG, 760_G|A, 763_T|C,
766_G|A, 790_C|T, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 833_C|T, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|A, 865_C|T, 877_A|G, 883_G|A, 886, 890_G|T, 891_.|G, 892_C|T, 898_C|T,
901_CC|TT, 904_T|A, 910_A|G, 931_C|T, 941_C|T, 943_A|G, 946_G|A, 949_C|T, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 985_T|A, 991_T|A, 997_C|T, 1036_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G,
1066_C|T, 1072_T|G, 1090_T|C, 1102_C|A, 1106_C|T, 1108_A|G, 1111_G|A, 1117_A|T, 1127_A|G, 1138_G|A, 1140_T|C, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_T|C, 1183_T|C, 1204_T|C, 1207_A|C,
1210_G|A, 1216_CC|TT, 1219_A|G, 1222_T|C, 1228_G|A, 1234_A|G, 1237_G|A, 1240_C|T, 1246_G|C, 1249_C|T, 1252_G|A, 1255_C|G, 1261_T|C, 1267_T|C, 1270_A|G, 1279_C|G, 1285_C|T, 1294_A|G, 1306_G|A,
1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1342_A|G, 1351_TT|CC, 1366_T|C, 1378_T|C, 1393_A|G, 1408_A|T, 1411_G|A, 1423_A|G, 1426_T|C, 1433_A|G, 1435_C|T, 1441_T|C, 1447_T|C, 1453_G|A, 1471_C|T,
1474_C|T, 1480_A|G, 1482_TC|CT, 1489_C|T, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1504_A|G, 1511_C|T, 1516_A|G, 1522_G|A, 1525_G|A, 1528_A|G, 1531_T|C, 1534_G|A, 1544_G|A, 1546_T|C, 1552_T|C,
1558_C|T, 1561_T|A, 1570_A|G, 1572_CA|AG, 1585_A|T, 1591_C|T, 1603_C|T, 1606_G|A, 1609_C|T, 1618_G|A, 1621_A|T, 1639_C|T, 1642_G|T, 1660_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A,
1696_T|C, 1701_GA|AG, 1705_AC|GT, 1723_G|A, 1732_C|T, 1738_A|G, 1747_T|C, 1753_C|T, 1760_A|C, 1765_T|C, 1771_G|A, 1775_A|G, 1782_A|G, 1785_A|G, 1792_T|A, 1798_A|G, 1801_A|C, 1807_T|G,
1810_A|G, 1813_T|C, 1816_T|C, 1819_T|A, 1822_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1879_C|T, 1887_T|C, 1894_C|T, 1900_C|T, 1915_C|A, 1926_TT|CC, 1942_A|G, 1946_T|C, 1969_T|C,
1978_A|G, 1993_T|C, 2003_A|G, 2008_T|C, 2020_G|A, 2023_T|C, 2029_T|C, 2035_C|G, 2038_C|A, 2044_A|C, 2050_T|C, 2053_T|G, 2063_C|T, 2080_A|C, 2083_T|C, 2086_T|C, 2089_A|G, 2098_C|T, 2104_C|A,
2112_G|C, 2116_A|G, 2119_T|C, 2122_A|C, 2125_T|C, 2128_C|G, 2131_T|C, 2134_C|T, 2146_A|G, 2152_A|C, 2176_T|C, 2188_A|G, 2193_T|C, 2197_A|G, 2201_C|T, 2209_C|T, 2215_A|G, 2218_CA|TG, 2221_C|T,
2224_C|T, 2230_T|C, 2239_C|T, 2248_G|A, 2251_C|T, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2275_T|A, 2278_T|C, 2280_C|T, 2290_C|T, 2302_G|A, 2305_GC|AT, 2308_A|G, 2314_C|T, 2318_T|C,
2322_AC|GT, 2344_G|A, 2350_G|A, 2353_A|C, 2376_CA|TG, 2380_A|G, 2395_C|T, 2399_A|G, 2408_T|C, 2413_A|T, 2419_G|C, 2432_T|C, 2437_T|C, 2440_A|G, 2446_T|G, 2455_T|C, 2464_C|T, 2467_C|A,
2479_C|T, 2488_G|A, 2491_C|T, 2494_G|A, 2497_C|T, 2500_A|G, 2506_TA|AG, 2509_C|T, 2515_A|C, 2518_T|C, 2521_A|G, 2524_C|T, 2527_T|G, 2548_C|T, 2569_T|A, 2575_G|A, 2581_A|T, 2593_A|G, 2599_T|C,
2602_T|C, 2620_CC|TT, 2632_T|C, 2641_T|G, 2644_G|A, 2650_G|A, 2659_A|G, 2668_A|G, 2680_T|C, 2686_TT|CC, 2695_A|G, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C,
2725_G|A, 2728_T|C, 2734_G|A, 2737_TG|CA, 2740_T|C, 2755_T|A, 2761_A|T, 2776_G|T, 2782_TC|CT, 2788_G|A, 2794_T|C, 2803_T|C, 2824_C|T, 2827_C|T, 2833_G|A, 2836_G|A, 2860_T|C, 2863_A|G,
2878_A|G, 2894_C|A, 2896_G|A, 2899_C|A, 2920_G|A, 2926_T|C, 2932_G|A, 2947_A|T, 2950_C|A, 2962_C|T, 2983_A|G, 2998_T|C, 3007_T|G, 3013_G|A, 3019_C|T, 3034_C|A, 3040_C|G, 3043_T|C, 3064_T|C,
3070_A|G, 3073_A|G, 3079_G|A, 3082_A|G, 3091_C|A, 3094_C|T, 3098_T|C, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3169_T|C, 3172_A|C, 3178_C|T, 3187_A|G,
3196_A|G, 3205_T|G, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|A, 3238_T|C, 3244_G|A, 3247_C|T, 3250_A|G, 3265_A|G, 3271_A|G, 3289_T|C, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG,
3316_T|C, 3319_CAA|TGG, 3328_T|C, 3331_A|G, 3334_G|T, 3349_A|G, 3358_G|C, 3361_T|C, 3364_C|T, 3370_AG|GA, 3373_T|C, 3394_C|A, 3397_C|A, 3412_T|A, 3421_C|T, 3424_T|C, 3427_T|A, 3436_G|T,
3439_T|C, 3445_T|C, 3448_C|A, 3460_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3480_G|A, 3484_T|C, 3490_G|T, 3496_C|A, 3502_T|G, 3514_AA|GG, 3517_A|C, 3523_T|A, 3535_T|G, 3569_C|T, 3571_A|G, 3573_G|A,
3577_A|G, 3589_A|C, 3598_GT|AC, 3601_G|A, 3610_AG|CA, 3620_T|C, 3622_G|A, 3628_A|C, 3632_C|T, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3649_T|C, 3652_CC|GT, 3655_T|G, 3667_A|G,
3679_T|A, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3700_G|A, 3715_A|G, 3727_T|C, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3751_A|G, 3754_C|A, 3757_A|G, 3763_G|A, 3778_T|C, 3782_C|T, 3784_C|G,
3790_C|A, 3793_A|G, 3799_C|T, 3820_G|A, 3826_A|G, 3847_T|A, 3856_T|C, 3860_G|A, 3868_C|G, 3871_C|G, 3883_T|C, 3886_A|G, 3895_T|G, 3898_T|C, 3901_C|T, 3908_C|T, 3928_T|C, 3931_T|C, 3934_G|A,
3946_TA|CG, 3949_C|T, 3953_T|C, 3959_C|T, 3961_C|G, 3967_T|G, 3982_C|A, 3985_T|A, 4006_CG|AA, 4009_A|G, 4013_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|A, 4045_T|C, 4054_T|C,
4056_TC|CA, 4066_C|T, 4069_C|T, 4081_T|C, 4087_T|C, 4099_C|T, 4105_C|G, 4108_A|T, 4114_C|T, 4120_C|G, 4129_A|G, 4142_C|T, 4147_T|C, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4174_G|A,
4183_T|C, 4198_G|A, 4204_C|T, 4210_A|G, 4219_A|C, 4229_C|T, 4234_A|G, 4240_G|A, 4246_T|C, 4249_G|A, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|G, 4270_T|C, 4273_GA|AG, 4289_C|A, 4291_C|T, 4306_T|C,
4321_G|A, 4330_G|A, 4333_A|C, 4336_G|A, 4341_A|G, 4348_T|A, 4351_T|A, 4360_A|C, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4411_A|T, 4414_C|T, 4429_G|A, 4435_G|A, 4438_G|A,
4441_T|C, 4453_A|G, 4456_G|T, 4465_C|T, 4469_G|A, 4474_G|C, 4483_G|A, 4495_T|C, 4498_G|A, 4504_CC|TA, 4519_T|A, 4522_TC|CA, 4531_C|T, 4540_G|C, 4547_T|C, 4549_T|C, 4557_G|A, 4562_G|A,
4564_T|C, 4567_G|A, 4576_G|A, 4579_T|C, 4583_T|C, 4585_G|C, 4594_T|C, 4598_A|G, 4600_T|A, 4605_AG|CA, 4609_CA|TG, 4612_C|T, 4618_A|G, 4628_C|T, 4630_G|A, 4651_A|T, 4660_A|G, 4663_C|A,
4666_CT|TC, 4669_G|A, 4672_G|A, 4681_G|A, 4684_A|G, 4711_G|C, 4720_A|G, 4732_C|G, 4741_A|T, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4769_T|C, 4771_GA|AG, 4774_T|C, 4778_T|A,
4780_T|C, 4786_T|C, 4792_A|C, 4798_A|G, 4807_C|T, 4813_T|C, 4819_C|T, 4829_T|C, 4855_A|G, 4861_C|T, 4870_C|T, 4873_G|A, 4876_T|C, 4878_TT|CC, 4882_A|C, 4903_C|T, 4915_G|A, 4919_T|C, 4924_C|T,
4927_A|G, 4930_G|T, 4939_G|C, 4954_T|G, 4957_C|G, 4960_T|C, 4969_T|C, 4975_T|C, 4981_T|C, 4984_A|C, 4987_A|T, 4993_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5014_G|A, 5020_T|A, 5024_C|T, 5029_C|T,
5038_C|A, 5041_C|T, 5047_C|T, 5062_C|T, 5065_G|A, 5068_C|T, 5080_G|A, 5088_TG|CA, 5092_G|A, 5098_A|G, 5101_A|G, 5107_G|A, 5113_C|T, 5116_A|G, 5119_G|A, 5140_A|G, 5152_TG|CA, 5155_C|T,
5161_T|C, 5164_T|C, 5173_A|G, 5182_G|A, 5185_A|C, 5190_.|C, 5195_C|T, 5200, 5206_CT|TC, 5212_C|T, 5215_G|A, 5230_CT|GC, 5239_T|A, 5245_GT|TC, 5251_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5269_T|C,
5272_T|C, 5284_G|A, 5287_T|C, 5299_G|A, 5302_C|T, 5305_G|A, 5308_A|G, 5311_C|T, 5323_T|C, 5326_T|C, 5332_T|G, 5335_C|T, 5344_G|A, 5346_G|A, 5368_C|T, 5374_C|T, 5377_C|T, 5380_A|G, 5383_T|A,
5393_T|C, 5398_A|G, 5401_A|G, 5407_G|A, 5410_T|G, 5413_T|G, 5416_C|T, 5428_C|T, 5440_A|G, 5443_C|T, 5449_TT|CC, 5452_G|A, 5458_A|G, 5461_T|C, 5470_C|A, 5473_T|C, 5479_T|C, 5488_G|A, 5500_G|A,
5503_A|G, 5530_A|T, 5539_G|T, 5542_T|A, 5545_G|A, 5566_T|C, 5569_A|G, 5575_T|G, 5584_A|G, 5593_A|G, 5596_G|A, 5599_C|T, 5602_A|T, 5605_C|T, 5620_C|T, 5623_A|G, 5626_G|T, 5638_CC|TT, 5641_A|G,
5662_A|C, 5668_C|T, 5683_A|G, 5692_T|C, 5701_T|A, 5704_C|A, 5708_T|C, 5710_G|A, 5713_T|C, 5716_G|A, 5722_A|G, 5737_C|G, 5740_G|A, 5749_A|G, 5758_G|A, 5760_G|A, 5764_A|G, 5767_C|T, 5773_G|A,
5776_A|T, 5779_G|A, 5797_T|C, 5800_AT|CC, 5827_A|G, 5836_T|C, 5839_C|T, 5846_C|A, 5872_T|C, 5875_G|A, 5893_A|G, 5908_A|G, 5914_A|G, 5917_G|A, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5938_C|T,
5941_T|C, 5947_T|C, 5953_G|A, 5959_G|A, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|A, 5980_C|T, 5983_A|G, 5989_A|G, 5992_C|T, 5998_C|T, 6001_C|T, 6004_T|C, 6013_T|A, 6023_A|G, 6025_T|C, 6034_C|T,
6037_C|T, 6047_T|C, 6052_G|A, 6067_G|A, 6073_C|T, 6100_C|T, 6113_G|A, 6115_T|A, 6118_A|G, 6124_T|A, 6142_T|A, 6145_T|C, 6154_A|G, 6157_G|A, 6160_G|A, 6169_G|A, 6174_A|G, 6182_A|C, 6184_A|G,
6187_A|G, 6193_G|T, 6199_T|C, 6211_C|T, 6220_T|A, 6223_G|A, 6229_A|G, 6235_C|T, 6244_TT|AC, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6280_C|T, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A,
6334_T|C, 6346_A|G, 6351_A|G, 6358_G|A, 6361_C|G, 6373_T|C, 6379_A|G, 6385_G|T, 6391_T|C, 6400_T|C, 6403_G|C, 6406_GT|TG, 6415_T|C, 6418_T|A, 6427_T|C, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G,
6445_T|G, 6448_T|A, 6451_A|G, 6457_A|G, 6463_G|A, 6478_T|A, 6490_T|C, 6508_A|G, 6514_T|C, 6517_C|T, 6523_T|C, 6530_C|T, 6532_CC|GA, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6574_A|C,
6589_A|T, 6595_A|G, 6611_A|G, 6613_A|T, 6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T, 6664_A|G, 6667_C|A, 6673_T|C, 6682_T|C, 6688_G|A, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6733_C|T, 6745_T|C,
6757_TG|CA, 6766_C|A, 6772_C|T, 6790_T|G, 6794_A|G, 6796_C|T, 6799_C|A, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6826_A|G, 6829_C|T, 6835_A|G, 6841_A|T, 6844_C|T, 6850_T|C, 6859_CC|TT,
6866_C|T, 6874_A|C, 6876_C|T, 6883_A|G, 6889_C|T, 6892_G|A, 6895_A|G, 6898_C|T, 6902_C|T, 6907_G|A, 6910_A|G, 6916_A|G, 6919_G|A, 6925_C|T, 6934_G|A, 6940_CT|TC, 6943_A|G, 6952_T|C,
6954_GTG|ACA, 6958_TT|CG, 6969_G|A, 6976_G|A, 6986_C|T, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|A, 7039_T|C, 7046_T|C, 7054_C|T, 7063_A|G, 7066_C|T, 7069_A|G, 7078_C|T, 7084_TC|CT,
7093_A|G, 7096_A|T, 7114_CC|TT, 7117_T|G, 7135_G|C, 7138_A|C, 7141_A|G, 7156_T|C, 7171_G|C, 7174_G|A, 7177_GG|AA, 7213_G|A, 7216_C|T, 7225_A|T, 7228_G|A, 7234_C|T, 7240_C|T, 7247_T|A,
7249_T|C, 7255_TT|CC, 7258_A|G, 7261_T|C, 7270_A|G, 7279_G|A, 7286_C|T, 7288_T|G, 7297_A|G, 7300_G|A, 7306_C|T, 7312_C|T, 7318_CG|TA, 7321_G|A, 7324_C|T, 7327_T|A, 7339_G|A, 7366_T|C,
7369_T|G, 7381_C|T, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7408_T|C, 7412_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7426_CC|TT, 7429_A|G, 7432_T|C, 7450_A|G, 7453, 7459_.|C, 7465_G|A, 7468_T|C,
7480_CC|AT, 7483_A|G, 7486_A|G, 7492_T|A, 7495_CT|TC, 7498_A|G, 7504_G|A, 7516_A|G, 7519_C|T, 7528_T|C, 7531_T|A, 7543_C|T, 7552_C|G, 7567_C|T, 7571_A|C, 7573_G|A, 7580_C|T, 7582_C|T,
7597_A|T, 7612_A|C, 7630_A|G, 7634_C|A, 7639_G|A, 7642_C|A, 7651_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_AC|GT, 7687_T|C, 7691_T|C, 7701_G|A, 7712_T|C, 7717_T|C, 7726_C|A, 7729_C|T,
7732_T|A, 7744_T|C, 7750_T|G, 7753_G|A, 7762_G|A, 7765_TT|CC, 7771_C|T, 7789_C|T, 7795_G|A, 7798_G|T, 7801_C|T, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7831_C|T, 7837_G|A, 7846_T|C,
7855_G|A, 7861_T|C, 7869_T|C, 7874_C|T, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7906_C|T, 7915_G|A, 7918_A|G, 7921_G|A, 7924_A|G, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A,
7969_G|A, 7990_T|C, 8011_C|T, 8014_C|T, 8017_G|A, 8023_A|G, 8032_C|T, 8041_A|G, 8044_A|G, 8053_A|G, 8065_T|C, 8071_T|C, 8074_C|T, 8086_A|G, 8089_AT|TC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C,
8120_G|A, 8123_A|C, 8134_T|C, 8137_T|C, 8140_A|T, 8143_A|G, 8150_.|T, 8155, 8158_T|C, 8161_G|T, 8167_C|G, 8169_A|G, 8173_C|T, 8188_A|G, 8209_TC|GA, 8212_C|T, 8215_G|A, 8218_AC|GT, 8224_A|G,
8227_G|A, 8245_C|T, 8248_A|G, 8251_A|G, 8254_G|C, 8266_T|C, 8269_C|T, 8275_G|A, 8278_T|C, 8281_C|T, 8284_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8302_G|A, 8320_TG|CA, 8341_A|G, 8344_A|G, 8354_C|T,
8356_G|A, 8362_G|A, 8374_T|C, 8380_T|A, 8383_A|C, 8392_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8440_A|G, 8446_G|A, 8449_A|G, 8452_C|A, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G,
8485_G|A, 8488_G|A, 8500_G|A, 8505_TGA|CAG, 8510_T|A, 8512_T|C, 8536_C|T, 8551_C|T, 8557_T|C, 8574_A|G, 8578_C|T, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|C, 8608_T|A, 8611_T|G,
8617_A|G, 8620_TC|CT, 8623_G|A, 8629_T|C, 8632_A|C, 8650_G|A, 8653_C|T, 8656_A|C, 8680_C|T, 8683_T|C, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8758_C|T, 8764_A|G,
8773_C|T, 8785_C|T, 8792_C|T, 8797_C|T, 8800_A|G, 8808_A|G, 8815_A|G, 8830_A|G, 8833_A|G, 8836_T|C, 8839_T|A, 8851_A|T, 8854_T|C, 8866_T|C, 8874_A|T, 8923_C|T, 8926_A|G, 8929_G|A, 8939_C|T,
8954_A|C, 8956_GAA|ACG, 8962_G|A, 8971_A|G, 8974_C|T, 9013_A|G, 9019_G|A, 9022_G|A, 9034_T|C, 9037_G|A, 9040_A|G, 9043_A|G, 9046_G|A, 9052_C|T, 9055_T|A, 9061_A|C, 9067_T|C, 9074_C|T,
9082_G|C, 9085_G|A, 9100_G|A, 9113_C|T, 9115_G|A, 9127_T|C, 9133_T|G, 9151_A|G, 9154_A|G, 9160_G|T, 9169_T|C, 9172_CT|TC, 9175_A|G, 9179_T|C, 9184_A|G, 9187_A|C, 9190_T|C, 9196_C|T, 9201_A|G,
9212_A|C, 9214_G|A, 9217_T|A, 9232_C|T, 9235_G|A, 9244_C|A, 9256_C|T, 9259_G|A, 9274_A|G, 9277_C|T, 9280_T|G, 9313_C|T, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_A|G, 9331_G|C, 9336_AA|TG,
9358_C|T, 9361_G|A, 9367_A|G, 9379_G|C, 9391_C|T, 9397_A|T, 9406_C|A, 9424_T|C, 9427_A|G, 9430_A|G, 9439_A|G, 9445_C|T, 9467_C|T, 9472_C|T, 9484_CT|TC, 9490_A|G, 9493_C|T, 9497_T|C, 9500_A|G,
9505_A|G, 9511_A|G, 9527_A|G, 9529_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9556_T|C, 9559_AT|TG, 9562_A|G, 9566_C|T, 9571_C|A, 9573_GG|AA, 9577_G|T, 9590_A|G, 9598_C|T, 9601_A|C,
9604_T|C, 9607_C|T, 9610_AC|GT, 9625_G|A, 9637_C|T, 9646_G|C, 9649_C|T, 9652_G|C, 9658_C|T, 9670_C|T, 9679_C|T, 9685_C|T, 9691_C|T, 9709_TA|GC, 9712_A|C, 9745_G|A, 9754_T|C, 9769_C|G,
9775_T|C, 9790_T|C, 9796_A|G, 9817_G|A, 9820_T|C, 9832_C|T, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_C|A, 9859_A|G, 9865_G|A, 9868_G|T, 9880_C|T, 9898_A|G, 9904_T|G, 9910_C|A, 9913_C|T,
9916_A|G, 9919_C|T, 9938_C|T, 9946_T|C, 9955_A|G, 9961_C|T, 9970_A|G, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10051_G|A, 10066_G|A, 10096_A|G,
10103_AC|GT, 10129_G|A, 10134_T|C, 10142_A|G, 10144_A|G, 10148_A|C, 10153_TG|CA, 10159_T|C, 10162_T|C, 10174_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A,
10231_C|T, 10234_C|T, 10240_T|C, 10243_A|G, 10246_C|G, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_GC|AT, 10273_AC|GA, 10279_G|A, 10285_C|T, 10291_C|T, 10294_C|T, 10297_A|G, 10312_G|A,
10315_T|C, 10336_A|G, 10338_TG|CC, 10342_T|C, 10348_T|C, 10351_C|T, 10355_A|G, 10358_A|G, 10363_C|T, 10365_A|T, 10369_10377, 10381_10382, 10385, 10391_10397, 10403_10406, 10409_10414,
10418_10422, 10425_C|T, 10427_10429, 10434_10442, 10444_10445, 10450, 10451_C|T, 10455_10466, 10470_10475, 10522, 10524_G|A, 10526_C|T, 10533_A|T, 10535_T|A, 10554_CAC|TGT, 10558_A|G,
10562_T|C, 10605_A|C, 10607_C|T, 10620_A|T, 10635_G|A, 10639_C|T, 10647_C|T, 10658_.|C, 10659_AG|CA, 10681_C|T, 10738_C|T, 10742_T|C, 10847_C|A
Case 3 (A.1): JF912183.1
| Target: 835 samples | Number of changes: 1453 | |
| BC: A.1.NmC2 + A.1 | BC BR: 11-12 | BC BR coord: 280 - 281 |
| Direction L1: >> | Initial region span: 1-11,1440-1453 | Gap history (edge excluded): 11-1440 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 4.52e-05 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
11 |
6.430273 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1440 |
1.992906 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 80_A|G, 108_C|T, 118_C|A, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 280_CA|TG, 286_G|A, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|T,
327_A|G, 346_A|G, 352_G|A, 358_T|C, 361_A|G, 363_G|A, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 424_C|T, 427_T|A, 434_C|T, 448_C|T, 451_A|G, 455_T|C, 467_T|C,
473_ACG|GTT, 488_T|C, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|G, 547_A|C, 550_C|T, 556_G|T, 565_C|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C,
625_C|T, 628_T|C, 649_G|A, 655_A|T, 664_T|A, 670_C|T, 676_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 706_T|C, 709_T|C, 718_C|T, 724_725, 727_728, 732_736, 747_.|GTCCAGAAG, 763_T|C, 766_G|A,
775_C|T, 781_T|C, 784_G|A, 802_A|G, 811_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 859_G|A, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G,
904_T|G, 910_A|G, 931_C|T, 934_G|C, 937_T|A, 943_A|G, 946_G|A, 950_T|C, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A,
1054_A|G, 1072_T|G, 1084_C|T, 1094_T|C, 1099_C|T, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1138_G|A, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|A, 1171_TC|CA, 1183_T|C,
1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1249_C|T, 1255_C|A, 1258_T|C, 1261_T|C, 1279_C|A, 1285_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T,
1327_A|G, 1330_C|T, 1333_T|C, 1339_C|T, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|T, 1411_G|A, 1423_A|G, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1474_C|T,
1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1504_A|G, 1507_T|C, 1516_A|G, 1525_G|T, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1546_T|C, 1549_C|T, 1558_C|T, 1561_T|A, 1570_A|G,
1572_C|A, 1585_A|T, 1593_G|A, 1606_G|A, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1675_T|C, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1696_T|C, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T,
1723_G|A, 1729_C|A, 1732_C|T, 1738_A|G, 1741_A|C, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1771_G|A, 1781_G|A, 1785_A|G, 1789_C|G, 1792_T|G, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1813_T|C,
1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1900_C|T, 1915_C|A, 1926_TT|CA, 1936_G|A,
1942_A|G, 1946_T|C, 1951_A|G, 1957_C|A, 1966_G|A, 1969_T|C, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2014_C|T, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A,
2038_C|A, 2044_A|C, 2047_C|T, 2063_C|T, 2068_T|C, 2080_A|T, 2083_T|C, 2089_A|G, 2095_C|T, 2098_C|T, 2101_T|C, 2104_C|A, 2110_G|A, 2112_GA|CT, 2116_A|G, 2125_TC|CT, 2128_C|G, 2146_A|G,
2149_G|A, 2152_A|T, 2164_A|G, 2188_A|G, 2193_TG|CA, 2197_A|G, 2201_C|T, 2215_A|G, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2239_C|T, 2242_T|C, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C,
2266_G|A, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_GC|AT, 2308_A|G, 2314_C|T, 2322_A|G, 2341_C|T, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C,
2410_G|A, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2518_T|C, 2524_C|T, 2527_T|A, 2541_A|G, 2548_C|T,
2554_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2611_G|A, 2621_C|T, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2650_G|A, 2665_G|A,
2677_C|T, 2686_TT|CC, 2695_A|G, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|T, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2752_A|G, 2755_T|A, 2773_T|A, 2776_G|T,
2782_T|C, 2785_G|A, 2788_G|A, 2794_T|C, 2809_T|C, 2812_G|A, 2821_G|A, 2827_C|T, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2894_C|A, 2896_G|A, 2899_C|G, 2905_T|C, 2908_T|C, 2920_G|A,
2932_G|A, 2938_G|A, 2947_A|T, 2950_C|A, 2962_C|T, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C,
3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3098_T|C, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T,
3211_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3319_CAAC|AGGT, 3331_A|G,
3334_G|T, 3340_A|G, 3343_A|G, 3352_C|G, 3355_C|T, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3457_T|C, 3460_G|A,
3465_G|A, 3469_A|G, 3472_G|A, 3478_A|T, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|T, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C,
3598_GT|AC, 3601_G|A, 3604_T|C, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3628_A|C, 3632_C|T, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3649_TC|CA, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G,
3679_T|G, 3682_G|T, 3688_G|A, 3691_T|C, 3694_C|T, 3715_A|G, 3718_C|T, 3733_G|C, 3739_T|C, 3745_C|T, 3748_T|C, 3763_G|A, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3826_A|G, 3829_A|G,
3832_A|C, 3850_C|T, 3853_G|A, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3895_T|A, 3898_T|C, 3901_C|T, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3982_C|G,
3985_T|A, 4006_CG|AA, 4013_T|C, 4021_TG|CA, 4024_C|T, 4036_A|C, 4039_GG|CA, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4099_C|T, 4105_C|G, 4115_C|T, 4117_G|A, 4120_CT|AC,
4129_A|G, 4132_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A,
4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4276_T|C, 4285_A|G, 4289_C|A, 4306_T|C, 4309_C|T, 4330_G|A, 4333_A|T, 4336_G|A, 4345_G|A, 4351_T|A, 4360_A|T, 4372_G|A, 4375_G|T, 4381_C|T, 4384_C|T,
4387_G|A, 4393_C|T, 4409_G|A, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4450_G|A, 4453_A|G, 4465_C|T, 4480_C|T, 4483_GC|AT, 4495_T|C, 4498_G|A, 4504_CC|TA,
4510_T|C, 4519_T|C, 4522_TC|CT, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4547_T|C, 4549_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4576_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A,
4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4654_C|T, 4663_C|A, 4667_T|C, 4669_G|A, 4672_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4720_A|G,
4729_T|C, 4735_A|G, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4759_T|C, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4798_A|G, 4807_C|T, 4810_C|T, 4816_T|C,
4834_A|G, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4885_A|G, 4888_G|A, 4891_C|T, 4897_C|G, 4900_C|T, 4912_A|G, 4915_G|A, 4918_CT|TC, 4921_G|A,
4924_C|T, 4930_G|T, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4975_T|C, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5035_T|C,
5038_C|A, 5041_C|T, 5047_C|T, 5053_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5125_G|A, 5134_A|G, 5143_A|G, 5152_TG|CA,
5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|C, 5206_CT|TC, 5212_C|T, 5215_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5257_C|T, 5260_G|A, 5269_T|C, 5284_G|A, 5287_T|C, 5293_C|T,
5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5314_C|T, 5323_T|C, 5326_T|C, 5332_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5359_T|C, 5362_C|T, 5368_C|T, 5374_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A,
5393_T|C, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5446_T|C, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C,
5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5560_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5639_C|T, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T,
5683_A|G, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_AT|CC, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T,
5872_T|C, 5875_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C,
6031_C|A, 6034_C|T, 6037_C|T, 6043_C|T, 6047_T|C, 6067_G|A, 6070_C|T, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G,
6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6241_T|C, 6244_T|A, 6253_G|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6292_T|C, 6310_C|T,
6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6367_G|A, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6421_G|A, 6430_A|G, 6433_T|C, 6439_G|A,
6451_AG|GA, 6457_A|G, 6460_T|C, 6472_A|G, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6514_T|C, 6517_C|T, 6523_T|C, 6530_C|T, 6532_C|G, 6544_A|G, 6547_C|T, 6550_T|C,
6569_C|T, 6597_T|C, 6611_A|G, 6613_A|T, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6649_T|C, 6664_A|G, 6667_C|T, 6673_T|C, 6682_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C,
6724_C|T, 6745_T|C, 6748_C|T, 6757_TG|CA, 6766_C|A, 6772_C|T, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6818_T|A, 6823_C|T, 6826_A|G, 6835_A|G, 6841_A|T, 6844_C|T,
6847_C|T, 6850_T|C, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A,
6979_TC|CT, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT,
7117_T|G, 7120_T|A, 7135_G|T, 7138_A|C, 7141_A|G, 7156_T|C, 7171_G|T, 7174_GC|AT, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7267_C|T,
7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_T|A, 7405_A|G, 7408_T|C, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T,
7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7456_C|T, 7463_T|C, 7480_C|G, 7483_A|G, 7486_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7585_T|C,
7597_A|T, 7612_A|C, 7624_A|T, 7630_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7690_GT|AC, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A,
7738_G|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7768_G|A, 7771_C|T, 7792_G|A, 7798_G|T, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7837_G|A, 7849_C|T, 7861_T|A,
7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7906_C|T, 7918_A|G, 7920_AG|GA, 7924_A|G, 7936_C|T, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7963_C|T,
7966_T|C, 7969_G|A, 7990_T|C, 7996_A|G, 8011_C|T, 8020_C|T, 8023_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8053_A|G, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|TC, 8092_G|A, 8098_G|A, 8101_C|G,
8104_A|C, 8107_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8154_CT|GC, 8161_G|C, 8167_C|A, 8169_A|G, 8188_A|G, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G,
8245_C|T, 8251_A|G, 8254_G|T, 8263_C|T, 8275_G|A, 8281_C|T, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|A, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8341_A|G, 8354_C|T, 8356_G|A,
8362_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8392_C|T, 8395_G|T, 8398_G|A, 8404_C|T, 8407_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG,
8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8536_C|T, 8551_C|T, 8554_C|T, 8557_T|C, 8560_C|T, 8566_T|C, 8574_A|G, 8584_A|G,
8587_T|C, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8608_T|G, 8611_T|G, 8614_T|C, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8725_A|G,
8743_G|A, 8746_A|G, 8749_T|C, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_A|G, 8821_C|T, 8826_A|G, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8860_A|G, 8866_T|C, 8874_A|T,
8884_A|G, 8911_G|A, 8923_C|T, 8929_G|A, 8939_C|T, 8941_G|A, 8953_AA|GC, 8956_GAA|ACG, 8962_G|A, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8986_T|C, 9009_9010, 9017_.|AA, 9022_G|A, 9031_G|A,
9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9112_C|T, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C,
9190_T|C, 9199_A|G, 9205_G|A, 9208_T|C, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|A, 9295_G|A, 9298_C|T, 9313_C|T, 9319_T|C, 9324_AA|GG,
9328_A|G, 9331_G|A, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9364_C|T, 9379_GT|AC, 9385_A|G, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9448_G|A, 9454_A|G, 9460_T|C,
9463_T|C, 9466_TC|CT, 9472_C|T, 9485_T|C, 9490_A|G, 9497_T|C, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9566_C|T,
9573_GG|AA, 9577_G|T, 9590_A|G, 9595_G|A, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9625_G|A, 9637_C|T, 9643_T|C, 9646_G|T, 9658_C|T, 9670_C|T, 9679_C|T, 9691_C|T, 9703_C|A, 9709_TA|GC,
9745_G|A, 9749_A|G, 9754_T|C, 9763_T|C, 9766_G|A, 9769_C|T, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_G|A, 9817_G|A, 9823_G|A, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9865_G|A,
9880_C|T, 9898_A|G, 9904_T|A, 9907_C|T, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9961_C|T, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G,
10027_A|C, 10030_A|G, 10036_GA|TG, 10051_G|A, 10066_G|A, 10072_C|T, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10140_AAA|GGG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C,
10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G,
10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10291_C|T, 10294_C|T, 10297_A|G, 10303_C|T, 10309_C|T, 10315_T|C, 10330_C|T, 10336_A|G, 10338_TG|CC, 10348_T|C, 10351_C|T, 10355_A|G, 10362,
10365_10366, 10368_10372, 10373_T|C, 10376_10379, 10382, 10385, 10391_10397, 10403_C|T, 10408_10416, 10418_C|T, 10421_A|T, 10423_10424, 10426_10430, 10435_10447, 10450_10460, 10465_10476,
10488_A|G, 10522, 10524_G|A, 10533_A|G, 10535_T|G, 10738_C|T
Case 3 (A.1): JF912184.1
| Target: 835 samples | Number of changes: 1441 | |
| BC: A.1.NmC2 + A.1 + A.1.NmC2 | BC BR: 18-19, 1437-1438 | BC BR coord: 321 - 322, 10532 - 10533 |
| Direction L1: >> | Initial region span: 1-18,1428-1437,1438-1441 | Gap history (edge excluded): 18-1438 -> 18-1428 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 8.19e-214 | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 3.13e-10 | |
| Flags: Model_2BP_Best | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
18 |
7.128718 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1428 |
3.072210 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1438 |
0.000000 |
-2088.390458 |
7522.780917 |
0.000000e+00 |
|
|
|
| A.1.NmC2 |
0 |
1437 |
-0.122999 |
-549.009661 |
4444.019322 |
8.192425e-214 |
|
|
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1438 |
6.352989 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 80_A|G, 108_C|T, 118_C|A, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 280_CA|TG, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|T, 327_A|G,
346_A|G, 352_G|A, 358_T|C, 361_A|G, 363_G|A, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 424_C|T, 427_T|A, 432_T|C, 434_C|T, 448_C|T, 451_A|G, 467_T|C,
473_ACG|GTT, 488_T|C, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 550_C|T, 556_G|T, 565_C|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C,
628_T|C, 637_C|T, 649_G|A, 655_A|T, 664_T|A, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 706_T|C, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 763_T|C, 766_G|A, 775_C|T,
781_T|C, 784_G|A, 802_A|G, 811_T|C, 826_A|G, 829_G|A, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 859_G|A, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G,
931_C|T, 934_G|C, 937_T|A, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G,
1094_T|C, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1138_G|A, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|A, 1171_TC|CA, 1183_T|C, 1207_A|T, 1210_G|A, 1216_CC|TT, 1219_A|G,
1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1249_C|T, 1255_C|A, 1261_T|C, 1279_C|A, 1285_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1339_C|T, 1352_T|C,
1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|T, 1411_G|A, 1423_A|G, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G,
1504_A|G, 1507_T|C, 1516_A|G, 1525_G|T, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1546_T|C, 1549_C|T, 1561_T|A, 1566_TG|GA, 1570_A|G, 1572_C|A, 1585_A|T, 1593_G|A, 1606_G|A, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1675_T|C, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1696_T|C, 1701_G|A, 1705_AC|GT, 1711_C|T, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|C, 1747_T|C,
1753_C|T, 1760_A|C, 1762_G|A, 1771_G|A, 1781_G|A, 1785_A|G, 1789_C|G, 1792_T|G, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1813_T|C, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C,
1843_G|C, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_TT|CC, 1900_C|T, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1951_A|G, 1957_C|A, 1966_G|A, 1969_T|A,
1975_G|A, 1978_A|G, 1981_A|T, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2047_C|T, 2063_C|T, 2068_T|C, 2080_A|T,
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9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9865_G|A, 9880_C|T, 9898_A|G, 9904_T|A, 9907_C|T, 9910_C|A, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T,
10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10051_G|A, 10066_G|A, 10072_C|T, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10140_AAA|GGG, 10144_A|G,
10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A,
10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10281_A|G, 10294_C|T, 10297_A|G, 10303_C|T, 10309_C|T, 10315_T|C, 10330_C|T, 10336_A|G, 10338_TG|CC, 10348_T|C, 10351_C|T, 10355_A|G,
10362, 10365_10366, 10368_10372, 10373_T|C, 10376_10379, 10382, 10385, 10391_10397, 10403_C|T, 10408_10416, 10418_C|T, 10421_A|T, 10423_10424, 10426_10430, 10435_10447, 10450_10460,
10465_10476, 10522, 10524_G|A, 10533_A|G, 10535_T|A, 10802_.|T, 10817
Case 3 (A.1): JF912186.1
| Target: 835 samples | Number of changes: 1445 | |
| BC: A.1.NmC2 + A.1 + A.1.NmC2 | BC BR: 18-19, 1441-1442 | BC BR coord: 321 - 322, 10532 - 10533 |
| Direction L1: << | Initial region span: 1-3,1432-1441,1442-1445 | Gap history (edge excluded): 3-1442 -> 3-1432 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 6.76e-165 | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 6.81e-03 | |
| Flags: Model_2BP_Best | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
3 |
5.083407 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1432 |
3.072210 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1442 |
0.000000 |
-2086.668038 |
7515.336076 |
0.000000e+00 |
|
|
|
| A.1.NmC2 |
0 |
1441 |
-0.122999 |
-439.427212 |
4220.854423 |
6.797401e-165 |
|
|
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1442 |
6.352989 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 80_A|G, 108_C|T, 118_C|A, 144_A|G, 166_A|T, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 280_CA|TG, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|T, 327_A|G,
346_A|G, 352_G|A, 358_T|C, 361_A|G, 363_G|A, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 424_C|T, 427_T|A, 434_C|T, 439_T|C, 448_C|T, 451_A|G, 455_T|C, 467_T|C,
473_ACG|GTT, 488_T|C, 496_G|C, 498_A|G, 501_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 550_C|T, 556_G|T, 565_C|T, 577_A|C, 584_T|C, 586_G|A, 589_A|G, 595_G|A, 604_C|T,
610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A, 670_C|T, 676_C|T, 682_G|A, 691_C|T, 703_A|T, 706_T|C, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 763_T|C, 766_G|A,
775_C|T, 781_T|C, 784_G|A, 802_A|G, 811_T|C, 826_A|G, 829_G|A, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 859_G|A, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G,
910_A|G, 922_G|A, 931_C|T, 934_G|C, 937_T|A, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A,
1054_A|G, 1072_T|G, 1094_T|C, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1138_G|A, 1140_TG|CA, 1147_A|G, 1158_A|G, 1165_TC|CT, 1168_C|A, 1171_TC|CA, 1183_T|C, 1207_A|T, 1210_G|A, 1216_CC|TT,
1219_A|G, 1221_CT|AG, 1228_G|A, 1231_C|T, 1237_G|A, 1240_C|T, 1246_G|T, 1249_C|T, 1255_C|A, 1261_T|C, 1279_C|A, 1285_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C,
1339_C|T, 1352_T|C, 1354_G|A, 1363_T|C, 1372_C|T, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|T, 1411_G|A, 1423_A|G, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1474_C|T, 1482_TC|CT,
1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1504_A|G, 1507_T|C, 1516_A|G, 1525_G|T, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1546_T|C, 1549_C|T, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T,
1593_G|A, 1606_G|A, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1675_T|C, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1696_T|C, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A,
1738_A|G, 1741_A|C, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1813_T|C, 1816_TT|CG,
1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|T, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1900_C|T, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C,
1951_A|G, 1957_C|A, 1960_C|T, 1966_G|A, 1969_T|C, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2014_C|T, 2017_T|C, 2023_T|C, 2026_A|G, 2029_T|C, 2032_C|T,
2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2080_A|T, 2083_T|C, 2089_A|G, 2101_T|C, 2104_C|A, 2110_G|A, 2112_GA|CT, 2116_A|G, 2125_TC|CT, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|T,
2164_A|G, 2176_T|C, 2188_A|G, 2193_TG|CA, 2197_A|G, 2201_C|T, 2215_A|G, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2275_T|A,
2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_GC|AT, 2308_A|G, 2314_C|T, 2322_A|G, 2341_C|T, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T,
2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2518_T|C, 2524_C|T, 2527_T|A, 2541_A|G, 2548_C|T, 2563_A|G,
2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2611_G|A, 2621_C|T, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2650_G|A, 2686_TT|CC, 2695_A|G, 2698_C|T,
2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|T, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2752_A|G, 2755_T|A, 2758_T|C, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A,
2794_T|C, 2812_G|A, 2821_G|A, 2827_C|T, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2894_C|A, 2896_G|A, 2899_C|G, 2905_T|C, 2908_T|C, 2920_G|A, 2932_G|A, 2938_G|A, 2947_A|T, 2950_C|A,
2956_C|T, 2962_C|T, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3070_A|G, 3073_A|G, 3079_G|A,
3091_C|T, 3098_T|C, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3220_T|C, 3226_T|A, 3238_T|C,
3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3340_A|G, 3343_A|G, 3352_C|G,
3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3457_T|C, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3490_G|C,
3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3554_G|A, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3601_G|A, 3604_T|C, 3610_AG|CA,
3613_A|G, 3619_CT|TC, 3628_A|C, 3632_C|T, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3649_TC|CA, 3653_C|T, 3655_T|G, 3658_T|C, 3662_C|T, 3667_A|G, 3679_T|G, 3682_G|T, 3691_T|C,
3694_C|T, 3708_A|G, 3715_A|G, 3718_C|T, 3733_G|C, 3739_T|C, 3745_C|T, 3748_T|C, 3763_G|A, 3781_GC|AT, 3784_C|G, 3790_C|G, 3802_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3835_C|T, 3850_C|T, 3860_G|A,
3868_C|A, 3883_T|C, 3886_A|G, 3895_T|A, 3898_T|C, 3901_C|T, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3982_C|G, 3985_T|A, 3990_C|T, 4006_CG|AA, 4013_T|C,
4018_T|C, 4021_TG|CA, 4024_C|T, 4036_A|C, 4039_GG|CA, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4099_C|T, 4105_C|G, 4117_G|A, 4120_CT|AC, 4129_A|G,
4132_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T,
4264_C|T, 4267_T|A, 4273_GA|AG, 4276_T|C, 4285_A|G, 4289_C|A, 4306_T|C, 4309_C|T, 4330_G|A, 4333_A|T, 4336_G|A, 4345_G|A, 4351_T|A, 4360_A|T, 4366_A|G, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A,
4393_C|T, 4409_G|A, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_GC|AT, 4495_T|C, 4498_G|A, 4504_CC|TA, 4510_T|C, 4519_T|C,
4522_TC|CT, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4547_T|C, 4549_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4576_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T,
4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4654_C|T, 4663_C|A, 4667_T|C, 4669_G|A, 4672_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4708_G|A, 4711_G|C, 4720_A|G, 4735_A|G,
4741_A|G, 4744_T|C, 4747_C|T, 4753_C|T, 4756_G|A, 4759_T|C, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4798_A|G, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|G, 4837_C|T, 4852_G|A,
4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4885_A|G, 4888_G|A, 4891_C|T, 4894_G|A, 4897_C|G, 4900_C|T, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4924_C|T, 4930_G|T, 4939_G|A,
4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4975_T|C, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|G, 5053_C|T,
5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5125_G|A, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T,
5197_C|T, 5200_A|C, 5207_T|C, 5212_C|T, 5215_G|A, 5230_C|G, 5239_T|A, 5245_G|A, 5251_C|T, 5257_C|T, 5260_G|A, 5269_T|C, 5284_G|A, 5287_T|C, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5314_C|T,
5323_T|C, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5359_T|C, 5362_C|T, 5368_C|T, 5374_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5393_T|C, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T,
5431_T|C, 5437_T|C, 5443_C|A, 5446_T|C, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A,
5548_T|C, 5560_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5639_C|T, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G,
5752_C|T, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5923_T|C, 5926_T|G,
5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 6004_T|C, 6023_A|G, 6025_T|C, 6031_C|A, 6034_C|T, 6037_C|T, 6043_C|T, 6047_T|C,
6065_T|C, 6067_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6113_G|A, 6124_T|A, 6127_A|G, 6135_T|C, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T,
6220_T|C, 6223_G|A, 6229_A|G, 6235_C|T, 6241_T|C, 6244_T|A, 6253_G|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6292_T|C, 6307_C|T, 6310_C|T, 6316_A|G, 6319_A|G, 6322_G|A,
6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6367_G|A, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6421_G|A, 6430_A|G, 6433_T|C, 6439_G|A, 6451_AG|GA, 6457_A|G,
6460_T|C, 6472_A|G, 6478_T|A, 6481_T|C, 6490_T|C, 6493_A|G, 6508_AA|GG, 6514_T|C, 6517_C|T, 6523_T|C, 6530_C|T, 6532_C|G, 6544_A|G, 6547_C|T, 6550_T|C, 6569_C|T, 6597_T|C, 6611_A|G, 6613_A|T,
6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6649_T|C, 6664_A|G, 6667_C|T, 6673_T|C, 6682_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6748_C|T, 6757_TG|CA,
6766_C|A, 6772_C|T, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6811_A|G, 6814_A|G, 6818_T|A, 6823_C|T, 6826_A|G, 6835_A|G, 6841_A|T, 6844_C|T, 6847_C|T, 6850_T|C, 6869_G|A, 6874_A|T, 6876_C|T,
6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6979_TC|CT, 6986_C|T, 6991_G|A, 7003_C|T,
7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G,
7156_T|C, 7171_G|T, 7174_GC|AT, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T, 7243_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7267_C|T, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T,
7318_CG|TA, 7324_C|T, 7327_T|G, 7357_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_T|A, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T,
7453_G|A, 7456_C|T, 7463_T|C, 7480_C|G, 7483_A|G, 7486_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7585_T|C, 7597_A|T, 7612_A|C, 7624_A|G, 7630_A|G,
7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7690_GT|AC, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7738_G|A, 7744_T|C, 7750_T|C, 7753_G|A,
7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7768_G|A, 7771_C|T, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7837_G|A, 7849_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G,
7888_C|T, 7891_A|T, 7900_T|C, 7906_C|T, 7915_G|A, 7918_A|G, 7921_G|A, 7924_A|G, 7936_C|T, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7963_C|T, 7966_T|C, 7969_G|A, 7990_TC|CT,
7996_A|G, 8011_C|T, 8020_C|T, 8023_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8053_A|G, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|TC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8120_G|A, 8134_T|C,
8140_A|T, 8143_A|G, 8150_C|T, 8154_CT|GC, 8161_G|C, 8167_C|A, 8169_A|G, 8188_A|G, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_AT|GC, 8245_C|T, 8251_A|G, 8254_G|T, 8263_C|T,
8275_G|A, 8281_C|T, 8284_T|C, 8287_T|C, 8290_A|G, 8299_C|T, 8305_T|A, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8356_G|A, 8362_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8392_C|T, 8395_G|T,
8398_G|A, 8404_C|T, 8407_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8500_G|A, 8503_C|T,
8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8536_C|T, 8551_C|T, 8554_C|T, 8557_T|C, 8560_C|T, 8566_T|C, 8574_A|G, 8584_A|G, 8587_T|C, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C,
8608_T|G, 8611_T|G, 8614_T|C, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8725_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8764_A|G, 8773_C|T, 8782_G|A,
8788_C|T, 8792_C|T, 8815_A|G, 8821_C|T, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8860_A|G, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8929_G|A, 8939_C|T, 8941_G|A, 8953_AA|GC,
8956_GAA|ACG, 8962_G|A, 8965_C|T, 8968_A|G, 8971_A|G, 8986_T|C, 9009_9010, 9017_.|AA, 9022_G|A, 9031_G|A, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A,
9112_C|T, 9127_T|C, 9133_T|A, 9142_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9205_G|A, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A,
9265_C|A, 9274_A|G, 9277_C|T, 9280_T|A, 9298_C|T, 9313_C|T, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_A|G, 9331_G|A, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9364_C|T, 9379_GT|CC, 9385_A|G,
9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9448_G|A, 9454_A|G, 9460_T|C, 9463_T|C, 9466_TC|CT, 9472_C|T, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9514_A|G,
9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9566_C|T, 9573_GG|AA, 9577_G|T, 9590_A|G, 9595_G|A, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9625_G|A, 9637_C|T,
9643_T|C, 9646_G|T, 9658_C|T, 9670_C|T, 9679_C|T, 9691_C|T, 9703_C|A, 9709_TA|GC, 9745_G|A, 9749_A|G, 9754_T|C, 9763_T|C, 9766_G|A, 9769_C|T, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_G|A,
9817_G|A, 9823_G|A, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9865_G|A, 9880_C|T, 9898_A|G, 9904_T|A, 9907_C|T, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9952_C|T, 9955_A|G, 9970_A|G,
9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10051_G|A, 10066_G|A, 10072_C|T, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G,
10134_T|C, 10140_AAA|GGG, 10144_A|G, 10148_A|C, 10153_T|C, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C,
10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10294_C|T, 10297_A|G, 10303_C|T, 10309_C|T, 10315_T|C, 10330_C|T, 10336_A|G,
10338_TG|CC, 10348_T|C, 10351_C|T, 10355_A|G, 10362, 10365_10366, 10368_10372, 10373_T|C, 10376_10379, 10382, 10385, 10391_10397, 10403_C|T, 10408_10416, 10418_C|T, 10421_A|T, 10423_10424,
10426_10430, 10435_10447, 10450_10460, 10465_10476, 10522, 10524_G|A, 10533_A|G, 10535_T|A, 10802_.|T, 10817
Case 3 (A.1): MF004382.1
| Target: 835 samples | Number of changes: 1483 | |
| BC: A.1 + A.1 | BC BR: 1465-1466 | BC BR coord: 10468 - 10469 |
| Direction L1: >> | Initial region span: 1-1460,1481-1483 | Gap history (edge excluded): 1460-1481 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 3.71e-10 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1460 |
200.937916 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1481 |
1.043567 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 80_A|G, 117_AC|TA, 130_T|C, 166_A|T, 171_G|A, 178_T|C, 226_C|T, 247_T|C, 262_C|T, 280_CA|TG, 284_T|C, 294_AA|GG, 301_C|T, 304_A|T, 307_C|T, 310_CC|TT, 313_A|G, 318_G|A, 320_T|C, 327_A|G,
346_A|G, 349_C|A, 352_G|A, 361_A|G, 363_G|A, 367_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 430_T|A, 433_TC|CT, 442_G|T, 445_A|G, 448_C|T, 451_A|G, 454_T|C, 467_T|C, 475_G|T, 488_T|C,
496_G|T, 499_A|G, 501_A|G, 514_CC|TT, 517_A|G, 523_G|C, 538_C|T, 547_A|C, 556_G|T, 568_C|T, 577_A|C, 584_T|C, 589_A|G, 596_T|A, 598_C|T, 604_C|T, 607_A|G, 610_C|T, 613_A|C, 628_T|C, 634_T|C,
637_C|T, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 676_C|T, 682_G|A, 691_C|T, 697_A|G, 700_C|T, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|T, 757_C|T, 760_G|A, 763_T|C,
766_G|A, 790_C|T, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 833_C|T, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|A, 871_T|C, 877_A|G, 883_G|A, 886_TC|CT, 890_A|G, 892_C|T, 898_C|T,
901_CC|TT, 904_T|G, 910_A|G, 931_C|T, 940_CC|TT, 943_A|G, 946_G|A, 949_C|T, 961_T|C, 964_G|A, 967_C|T, 973_A|G, 985_T|A, 991_T|A, 1036_T|C, 1042_T|C, 1045_CC|TT, 1051_G|A, 1054_A|G, 1066_C|T,
1072_T|G, 1090_T|C, 1102_C|A, 1108_A|G, 1111_G|A, 1117_A|T, 1127_A|G, 1138_G|A, 1140_TG|CA, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_T|C, 1183_T|C, 1189_C|T, 1204_T|C, 1207_A|T, 1210_G|A,
1216_CC|TT, 1219_A|G, 1222_T|C, 1228_G|A, 1234_A|G, 1237_G|A, 1240_CA|TC, 1243_T|C, 1246_G|C, 1249_C|T, 1252_G|A, 1255_C|A, 1261_T|C, 1267_T|C, 1279_C|G, 1282_T|C, 1294_A|G, 1300_G|A,
1306_G|A, 1309_C|T, 1321_C|T, 1333_T|C, 1342_A|G, 1345_C|T, 1351_TT|CC, 1366_T|C, 1378_T|C, 1390_C|T, 1393_A|G, 1399_AT|GC, 1408_A|T, 1411_G|A, 1423_A|G, 1426_T|C, 1433_A|G, 1435_C|T,
1438_C|T, 1453_G|A, 1471_C|T, 1474_C|T, 1480_A|G, 1482_TC|CT, 1491_T|C, 1495_G|A, 1501_A|G, 1504_A|G, 1507_T|C, 1516_A|G, 1519_C|T, 1522_G|A, 1525_G|A, 1528_A|G, 1531_T|A, 1534_G|A, 1544_G|A,
1546_T|C, 1552_T|C, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1603_C|T, 1609_C|T, 1618_G|A, 1621_A|T, 1642_G|T, 1660_T|C, 1669_C|G, 1675_T|C, 1678_A|G, 1684_G|A, 1690_C|T,
1693_C|A, 1701_G|A, 1705_AC|GT, 1723_G|A, 1732_CT|TC, 1738_A|G, 1747_T|C, 1760_A|C, 1765_T|C, 1782_A|G, 1785_A|G, 1792_T|G, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1813_T|C, 1816_T|C,
1819_T|A, 1822_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1879_C|T, 1887_T|C, 1900_C|T, 1906_T|A, 1915_C|A, 1926_TT|CC, 1946_T|C, 1951_A|G, 1963_C|T, 1969_T|C, 1978_A|G, 1990_T|C,
1993_T|C, 1996_A|G, 2000_G|T, 2003_A|G, 2008_T|C, 2020_G|A, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2047_C|T, 2053_T|G, 2059_A|G, 2063_C|T, 2080_A|C, 2083_T|C, 2086_T|C,
2089_A|G, 2098_C|T, 2101_T|C, 2104_C|A, 2112_GA|CG, 2116_A|G, 2119_T|C, 2122_A|T, 2128_C|G, 2131_T|C, 2146_A|G, 2152_A|C, 2164_A|G, 2188_A|G, 2193_T|C, 2197_A|G, 2209_C|T, 2215_A|G,
2218_CA|TG, 2221_C|T, 2224_C|A, 2230_T|C, 2239_C|T, 2248_G|A, 2251_C|T, 2257_T|A, 2260_G|A, 2266_G|A, 2275_T|A, 2278_T|C, 2280_C|T, 2290_C|T, 2305_GC|AT, 2308_A|G, 2314_C|T, 2322_AC|GT,
2350_G|A, 2353_A|C, 2356_T|C, 2376_CA|TG, 2380_A|G, 2395_C|T, 2401_C|T, 2408_T|C, 2413_A|T, 2419_G|C, 2432_T|C, 2437_T|C, 2446_T|G, 2455_T|C, 2464_C|T, 2467_C|A, 2481_A|G, 2488_G|A, 2494_G|A,
2497_C|T, 2500_A|G, 2506_TA|AG, 2515_A|C, 2518_T|C, 2521_A|G, 2524_C|T, 2527_T|G, 2533_C|T, 2537_C|T, 2548_C|T, 2566_T|C, 2569_T|A, 2575_G|A, 2581_A|T, 2593_A|G, 2599_T|C, 2602_T|C, 2605_A|G,
2620_CC|TT, 2626_T|C, 2632_T|C, 2635_C|T, 2641_T|G, 2644_G|A, 2650_G|A, 2659_A|G, 2668_A|G, 2686_TT|CC, 2695_A|G, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C,
2725_G|A, 2728_T|C, 2731_A|C, 2734_G|A, 2737_TG|CA, 2740_T|C, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|T, 2767_C|T, 2776_G|T, 2782_TC|CT, 2788_G|A, 2794_T|C, 2803_T|C, 2809_T|C, 2824_C|T,
2827_C|T, 2833_G|A, 2836_G|A, 2860_T|C, 2863_A|G, 2878_A|G, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2947_A|T, 2950_C|A, 2962_C|T, 2983_A|G, 2986_C|T, 3007_T|G, 3013_G|A, 3019_C|T,
3025_A|G, 3031_T|C, 3034_C|A, 3040_C|G, 3043_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|A, 3098_T|C, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C,
3169_T|C, 3172_A|C, 3178_C|T, 3187_A|G, 3193_C|T, 3205_T|G, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|A, 3238_T|C, 3244_G|A, 3247_C|T, 3250_A|G, 3271_A|G, 3289_T|C, 3298_G|A, 3301_T|C,
3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|TGG, 3328_T|C, 3334_G|T, 3337_A|G, 3349_A|G, 3358_G|C, 3361_T|C, 3364_C|T, 3370_AG|GA, 3373_T|C, 3382_A|G, 3394_C|A, 3397_C|A, 3403_A|G,
3412_T|A, 3421_C|T, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3457_T|C, 3460_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3480_G|A, 3484_T|C, 3490_G|T, 3496_C|A, 3502_T|G, 3511_A|G, 3514_AA|GG, 3517_A|C,
3523_T|A, 3535_TT|GC, 3566_G|T, 3569_C|T, 3571_A|G, 3573_G|A, 3576_AA|GG, 3589_A|C, 3598_G|A, 3601_G|A, 3610_AG|CA, 3620_T|C, 3622_G|A, 3628_A|C, 3632_C|T, 3634_G|A, 3637_C|T, 3640_G|A,
3643_A|G, 3646_A|G, 3649_T|C, 3652_CC|GT, 3655_T|G, 3658_TT|CC, 3667_A|G, 3670_CAC|TGT, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3715_A|G, 3718_C|T, 3727_T|C, 3733_G|C, 3739_T|C,
3745_C|T, 3748_T|C, 3751_A|G, 3757_A|G, 3760_A|G, 3763_G|A, 3778_T|C, 3782_C|T, 3784_C|G, 3790_C|A, 3793_A|G, 3817_G|A, 3820_GA|AG, 3824_C|T, 3826_A|T, 3832_A|T, 3847_T|A, 3851_T|C, 3856_T|C,
3860_G|A, 3868_C|A, 3871_C|G, 3883_TC|CT, 3886_A|G, 3895_T|G, 3898_T|C, 3901_C|T, 3908_C|T, 3928_T|C, 3931_T|C, 3934_G|A, 3940_A|G, 3945_ATA|GCG, 3953_T|C, 3959_C|T, 3961_C|G, 3967_TC|GT,
3982_C|G, 3985_T|A, 4006_CG|AA, 4009_A|G, 4013_T|C, 4021_TG|CA, 4030_T|C, 4045_T|C, 4054_T|C, 4056_TC|CA, 4066_C|T, 4075_G|A, 4081_T|C, 4084_A|G, 4087_T|C, 4105_C|G, 4108_A|T, 4120_C|A,
4129_A|G, 4142_C|T, 4150_A|C, 4153_TC|CA, 4159_A|G, 4165_C|A, 4171_T|C, 4174_G|A, 4183_T|C, 4204_C|T, 4210_A|G, 4219_A|C, 4229_C|T, 4234_A|G, 4246_T|C, 4264_C|T, 4267_T|G, 4270_T|C,
4273_GA|AG, 4289_C|A, 4291_C|T, 4304_G|A, 4306_T|C, 4321_G|A, 4324_G|A, 4333_A|C, 4336_G|A, 4341_A|G, 4348_T|A, 4351_T|A, 4360_A|T, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T,
4411_A|C, 4423_A|G, 4429_G|A, 4435_G|A, 4438_G|A, 4441_T|C, 4453_AG|GA, 4456_G|C, 4465_C|T, 4469_G|A, 4474_G|C, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4504_CC|TA, 4519_T|A, 4522_TC|CA,
4528_G|A, 4531_C|T, 4540_G|T, 4544_C|T, 4547_T|C, 4549_T|C, 4557_G|A, 4576_G|A, 4579_T|C, 4583_T|C, 4585_G|C, 4594_T|C, 4598_A|G, 4600_T|A, 4603_T|C, 4605_AG|CA, 4609_CA|TG, 4612_C|T,
4618_A|G, 4627_TC|CT, 4630_G|A, 4651_A|T, 4660_A|G, 4663_C|T, 4666_CT|TC, 4669_G|A, 4678_C|T, 4684_A|G, 4711_G|C, 4732_C|G, 4741_A|T, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A,
4769_T|C, 4771_GA|AG, 4774_T|C, 4778_T|A, 4780_T|C, 4792_A|C, 4813_T|C, 4819_C|T, 4829_T|C, 4834_A|G, 4840_A|G, 4852_G|A, 4855_A|G, 4861_C|T, 4873_G|T, 4876_T|C, 4878_TT|CC, 4882_A|C,
4900_C|T, 4903_C|T, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4939_G|C, 4954_T|G, 4957_C|G, 4969_T|C, 4975_T|C, 4978_C|T, 4981_T|C, 4984_A|T, 4987_A|C, 4993_T|C, 4999_T|C,
5008_C|T, 5011_A|T, 5014_G|A, 5020_T|A, 5024_C|T, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5062_C|T, 5068_C|T, 5088_TG|CA, 5092_G|A, 5098_A|G, 5101_A|G, 5103_A|G, 5107_G|A, 5113_C|T, 5116_A|G,
5119_G|A, 5140_A|G, 5152_TG|AA, 5155_C|T, 5161_T|C, 5164_T|C, 5173_A|G, 5176_T|C, 5179_G|A, 5182_G|A, 5185_A|T, 5188_A|G, 5191_T|C, 5193_TC|AT, 5197_C|G, 5200_A|C, 5206_CT|TC, 5212_C|T,
5215_G|A, 5218_C|T, 5230_CT|GC, 5239_T|G, 5245_GT|TC, 5251_C|T, 5257_C|T, 5272_T|C, 5275_A|G, 5287_T|C, 5293_C|T, 5299_G|A, 5302_C|T, 5305_G|A, 5311_C|T, 5323_T|C, 5326_T|C, 5332_T|G,
5335_C|T, 5344_G|A, 5346_GA|AG, 5368_C|T, 5371_T|C, 5380_A|G, 5383_T|A, 5393_T|C, 5398_A|G, 5407_G|A, 5410_T|G, 5413_T|G, 5416_C|T, 5422_A|G, 5428_C|T, 5431_T|C, 5440_A|G, 5443_C|T, 5452_G|A,
5458_A|G, 5461_T|C, 5464_C|T, 5470_C|A, 5473_T|C, 5479_T|C, 5500_G|A, 5530_A|T, 5539_G|C, 5542_T|A, 5545_G|A, 5549_A|G, 5569_A|G, 5575_T|G, 5584_A|G, 5593_A|G, 5596_G|A, 5599_C|T, 5602_A|T,
5605_C|T, 5623_A|G, 5626_G|T, 5639_C|T, 5641_A|G, 5662_A|C, 5668_C|T, 5683_A|G, 5689_A|G, 5701_T|A, 5708_T|C, 5710_G|A, 5713_T|C, 5716_G|A, 5722_A|G, 5737_CC|GT, 5740_G|A, 5749_A|G, 5758_G|A,
5760_G|A, 5764_A|G, 5773_G|A, 5776_A|T, 5779_G|A, 5797_T|C, 5800_A|C, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5872_T|C, 5875_G|A, 5893_A|G, 5914_A|G, 5917_G|A, 5926_T|G, 5929_C|T, 5932_C|A,
5935_A|T, 5938_C|T, 5941_T|C, 5947_T|C, 5953_G|A, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|A, 5980_C|T, 5983_A|G, 5989_A|G, 5992_C|T, 5998_C|T, 6001_C|T, 6004_T|C, 6013_T|A, 6023_A|G, 6025_T|C,
6034_C|T, 6037_C|T, 6047_T|C, 6052_G|A, 6067_G|A, 6100_C|T, 6113_G|A, 6115_T|A, 6118_A|G, 6121_A|G, 6124_T|A, 6127_A|G, 6136_T|C, 6140_C|A, 6142_T|A, 6145_T|C, 6154_AC|GT, 6157_G|A, 6160_G|A,
6169_G|A, 6172_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6229_A|G, 6244_TT|AC, 6259_T|C, 6262_T|A, 6271_T|C, 6280_C|T, 6283_T|A, 6292_T|C, 6310_C|T, 6316_A|G,
6334_T|C, 6346_A|G, 6351_A|G, 6356_C|T, 6361_C|G, 6367_G|A, 6373_T|C, 6379_A|G, 6385_G|T, 6391_T|C, 6400_T|C, 6403_G|T, 6406_GT|TG, 6409_T|C, 6415_T|C, 6418_T|A, 6427_T|C, 6430_A|G, 6433_T|C,
6439_G|A, 6442_A|G, 6445_T|G, 6448_T|A, 6451_A|G, 6463_G|A, 6472_A|G, 6478_T|A, 6490_T|C, 6493_A|G, 6496_A|G, 6508_A|G, 6514_T|C, 6517_C|T, 6529_CC|TT, 6532_CC|GA, 6547_C|T, 6550_T|C,
6569_C|T, 6571_A|G, 6595_A|G, 6611_A|G, 6613_A|T, 6616_G|A, 6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T, 6649_T|C, 6664_A|G, 6667_C|A, 6673_T|C, 6682_T|C, 6688_G|A, 6703_C|T, 6706_CT|TA,
6709_T|C, 6715_T|C, 6724_C|T, 6730_A|G, 6733_C|T, 6745_T|C, 6757_TG|CA, 6760_C|T, 6766_C|G, 6781_G|A, 6790_T|G, 6794_A|G, 6796_C|T, 6799_C|A, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA,
6823_C|T, 6826_A|G, 6835_A|G, 6841_A|T, 6844_C|T, 6847_C|T, 6850_T|C, 6859_CC|TT, 6866_C|T, 6874_A|C, 6876_C|T, 6889_C|T, 6892_G|A, 6895_A|G, 6898_C|T, 6902_C|T, 6907_G|A, 6910_A|G, 6916_A|G,
6919_G|A, 6925_C|T, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6952_T|C, 6955_TG|CA, 6958_TT|CG, 6969_G|A, 6976_G|A, 6986_C|T, 6988_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|G,
7030_A|G, 7046_T|C, 7054_C|T, 7063_A|G, 7066_C|T, 7069_A|G, 7079_C|T, 7084_T|C, 7096_A|T, 7105_A|G, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|T, 7138_A|C, 7141_A|G, 7156_T|C, 7171_G|C, 7174_G|A,
7177_GG|AA, 7180_C|T, 7211_C|T, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T, 7243_C|T, 7247_T|A, 7249_T|C, 7255_T|C, 7258_A|G, 7261_T|C, 7270_A|G, 7279_G|A, 7286_C|T, 7288_T|G, 7291_A|C, 7297_A|G,
7300_G|A, 7306_C|T, 7312_C|T, 7318_CG|TA, 7321_G|A, 7324_C|T, 7327_T|A, 7339_G|A, 7366_T|C, 7369_T|G, 7384_T|A, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7408_T|C, 7412_C|T, 7414_T|G, 7420_T|C,
7423_C|T, 7426_CC|TT, 7429_A|G, 7432_T|C, 7441_C|T, 7450_A|G, 7453, 7459_.|Y, 7465_G|A, 7468_T|C, 7480_C|A, 7483_A|G, 7489_A|G, 7492_T|A, 7495_CT|TC, 7498_A|G, 7501_G|A, 7504_G|A, 7516_A|G,
7519_C|T, 7528_T|C, 7531_T|G, 7552_C|G, 7561_A|G, 7571_A|C, 7579_TC|CT, 7582_C|T, 7588_T|C, 7597_A|T, 7612_A|C, 7624_A|T, 7630_A|G, 7634_C|A, 7642_C|A, 7645_G|A, 7651_A|G, 7657_TT|CC,
7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7701_G|A, 7712_T|C, 7717_T|C, 7726_C|A, 7732_T|C, 7744_T|C, 7750_T|A, 7753_G|A, 7762_G|A, 7765_T|C, 7771_C|T, 7789_C|T, 7798_G|T, 7804_C|G,
7807_G|A, 7813_C|T, 7816_A|T, 7819_GT|AC, 7825_G|A, 7831_C|T, 7837_G|A, 7851_A|G, 7861_T|C, 7869_T|C, 7876_G|A, 7879_G|A, 7882_T|C, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7906_C|T, 7918_A|G,
7921_G|A, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7969_G|A, 7990_T|C, 8011_C|T, 8014_C|T, 8023_A|G, 8041_A|G, 8044_A|G, 8053_A|G, 8065_T|C, 8071_T|C, 8074_C|T, 8086_A|G,
8089_AT|TC, 8092_G|A, 8095_A|G, 8098_G|A, 8101_C|G, 8104_A|C, 8120_G|A, 8123_A|C, 8134_T|C, 8137_T|C, 8140_A|T, 8143_A|G, 8152_G|T, 8154_C|G, 8158_T|C, 8161_G|T, 8167_C|G, 8169_A|G, 8188_A|G,
8209_T|G, 8212_C|A, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8227_G|A, 8245_C|T, 8248_A|G, 8251_A|G, 8254_G|C, 8260_G|A, 8266_T|C, 8269_C|T, 8275_G|A, 8281_C|T, 8284_T|C, 8290_A|G, 8296_C|T,
8299_C|T, 8302_G|A, 8317_C|T, 8320_TG|CA, 8329_T|C, 8341_A|G, 8344_A|G, 8356_G|A, 8362_G|A, 8380_T|A, 8383_A|C, 8392_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8440_A|G, 8446_G|A, 8449_A|G, 8452_C|A,
8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8500_G|A, 8504_ATGA|GCAG, 8510_T|A, 8512_T|C, 8518_TT|CC, 8533_C|T, 8551_C|T, 8554_C|T, 8557_T|C, 8574_A|G, 8584_A|G,
8587_T|C, 8590_G|A, 8593_G|A, 8596_C|T, 8600_G|A, 8602_A|C, 8608_T|A, 8611_T|G, 8614_T|C, 8617_A|G, 8632_A|C, 8638_C|T, 8656_A|T, 8671_T|A, 8680_C|T, 8692_G|A, 8707_A|G, 8719_C|T, 8742_CG|TA,
8746_A|G, 8749_T|C, 8755_G|A, 8758_C|T, 8764_A|G, 8770_C|T, 8773_C|T, 8782_G|A, 8788_C|T, 8797_C|T, 8800_A|G, 8808_A|G, 8815_A|G, 8824_A|G, 8830_A|G, 8833_A|G, 8836_T|C, 8839_T|A, 8851_A|C,
8854_T|C, 8866_T|C, 8874_A|T, 8923_C|T, 8929_G|A, 8939_C|T, 8954_A|C, 8957_AA|CG, 8960_C|T, 8962_G|A, 8965_C|T, 8968_A|G, 8971_A|G, 8974_C|T, 8986_T|C, 9019_G|A, 9022_G|A, 9034_T|C, 9040_A|G,
9043_A|G, 9046_G|A, 9052_C|T, 9055_T|C, 9061_A|C, 9067_T|C, 9074_C|T, 9082_G|C, 9085_G|A, 9100_G|A, 9113_C|T, 9115_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9145_C|T, 9151_A|G, 9160_G|T, 9166_C|T,
9169_T|C, 9172_CT|TC, 9175_A|G, 9179_T|C, 9187_A|C, 9190_T|C, 9212_A|C, 9214_G|A, 9217_T|A, 9232_C|T, 9235_G|A, 9244_C|A, 9259_G|A, 9274_A|G, 9277_C|T, 9280_T|G, 9299_T|C, 9313_C|T, 9319_T|C,
9322_C|T, 9324_AA|GG, 9328_A|G, 9335_CAA|TTG, 9343_G|A, 9361_G|A, 9367_A|G, 9376_A|G, 9379_GT|CC, 9382_G|A, 9391_C|A, 9397_A|T, 9406_C|A, 9416_G|A, 9424_T|C, 9427_A|G, 9430_A|G, 9439_A|G,
9445_C|T, 9467_C|T, 9485_T|C, 9490_A|G, 9493_C|T, 9505_A|G, 9527_A|G, 9529_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|TG, 9562_A|G, 9571_C|A, 9573_GG|AA,
9577_G|C, 9590_A|G, 9598_C|T, 9601_A|T, 9607_C|T, 9610_AC|GT, 9625_G|A, 9637_C|T, 9646_G|C, 9652_G|C, 9658_C|T, 9670_C|T, 9679_C|T, 9685_C|T, 9691_C|T, 9709_TA|GC, 9712_A|C, 9718_C|T,
9745_G|A, 9754_T|C, 9769_C|G, 9775_T|C, 9790_T|C, 9796_A|G, 9799_G|A, 9817_G|A, 9820_T|C, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9847_G|A, 9850_C|A, 9859_A|G, 9865_G|A, 9868_G|T, 9880_C|T,
9898_A|G, 9901_A|G, 9904_T|A, 9910_C|A, 9919_C|T, 9922_T|C, 9938_C|T, 9946_T|C, 9955_A|G, 9961_C|T, 9970_A|G, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|G, 10018_A|G, 10021_A|G,
10024_C|T, 10027_A|C, 10030_A|G, 10036_GA|TG, 10051_G|A, 10063_C|T, 10066_G|A, 10096_A|G, 10103_AC|GT, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA,
10162_T|C, 10165_A|G, 10174_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G,
10264_G|A, 10273_AC|GA, 10276_G|A, 10294_C|T, 10312_G|A, 10336_A|G, 10338_TG|CC, 10342_T|C, 10348_T|C, 10351_C|T, 10355_A|G, 10358_A|G, 10363_C|T, 10365_AA|TG, 10369_10377, 10383_10385,
10391_10394, 10396_10398, 10402_10407, 10409_10415, 10417_10418, 10422_A|C, 10425_C|T, 10427_10429, 10434_10442, 10444_10445, 10450, 10451_C|T, 10455_10460, 10464_10475, 10522, 10524_G|A,
10533_A|G, 10535_T|A, 10554_CAC|TGT, 10558_A|G, 10562_T|C, 10605_ACC|CTT, 10611_A|G, 10620_A|C, 10635_G|A, 10639_C|T, 10647_C|T, 10658_.|C, 10659_AG|CA, 10740_A|G, 10742_T|A, 10847_C|A
Case 3 (A.1): MH018100.1
| Target: 835 samples | Number of changes: 1407 | |
| BC: A.1.NmC2 + A.1 | BC BR: 1383-1384 | BC BR coord: 10152 - 10153 |
| Direction L1: >> | Initial region span: 1-1383,1402-1407 | Gap history (edge excluded): 1383-1402 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 7.72e-96 | Rec. model vs L2: 1.65e-142 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1383 |
253.040540 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
3 |
0.251317 |
-1076.329321 |
5228.658642 |
0.000000e+00 |
|
|
|
| A.1 |
835 |
4 |
0.102074 |
-105.023005 |
3286.046009 |
3.121378e-156 |
|
|
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1402 |
0.440912 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 217_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A,
358_T|C, 361_A|G, 363_G|A, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 436_G|A, 444_A|C, 448_C|T, 451_A|G, 455_T|C, 467_T|C, 473_ACG|GTT,
488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 556_G|T, 565_C|T, 577_A|C, 584_T|C, 589_A|G, 598_C|T, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 631_C|T,
649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 676_C|T, 682_G|A, 694_T|C, 700_C|T, 703_A|C, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T,
781_T|C, 784_G|A, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G,
931_C|T, 934_G|C, 937_T|A, 943_A|G, 946_G|A, 949_C|T, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G,
1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1138_G|A, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1183_T|C, 1207_A|T,
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8518_TT|CC, 8524_CA|TG, 8536_C|T, 8545_C|T, 8551_C|T, 8554_C|T, 8557_T|C, 8560_C|T, 8566_T|C, 8569_C|T, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|C, 8605_T|C, 8608_T|G,
8611_T|G, 8614_T|C, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8788_C|T,
8815_AC|GT, 8821_C|T, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8950_A|G, 8954_A|C, 8956_GAA|ACG, 8965_C|T,
8968_A|G, 8971_A|G, 8980_T|C, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|T, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T,
9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C,
9324_AA|GG, 9328_AC|GT, 9331_G|A, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9454_A|G, 9463_T|C,
9466_TC|CT, 9481_C|T, 9485_T|C, 9493_C|T, 9497_T|C, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9566_C|T, 9573_G|A, 9577_G|T,
9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|C, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9688_T|C, 9691_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC,
9745_G|A, 9749_A|G, 9754_T|C, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_G|A, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9862_A|G, 9865_G|A, 9880_C|T,
9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G,
10036_GA|TG, 10047_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10154_G|A, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T,
10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10270_T|C, 10273_AC|GA, 10276_G|A, 10281_A|G,
10297_A|G, 10303_C|T
Case 3 (A.1): MH018101.1
| Target: 835 samples | Number of changes: 1412 | |
| BC: A.1.NmC2 + A.1 | BC BR: 1388-1389 | BC BR coord: 10152 - 10153 |
| Direction L1: >> | Initial region span: 1-1388,1407-1412 | Gap history (edge excluded): 1388-1407 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 7.72e-96 | Rec. model vs L2: 2.88e-140 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1388 |
248.473717 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
3 |
0.251317 |
-1085.159657 |
5250.319314 |
0.000000e+00 |
|
|
|
| A.1 |
835 |
4 |
0.102074 |
-104.354436 |
3288.708872 |
5.859735e-154 |
|
|
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1407 |
0.440912 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 217_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A,
358_T|C, 361_A|G, 363_G|A, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 436_G|A, 444_A|C, 448_C|T, 451_A|G, 455_T|C, 467_T|C, 473_ACG|GTT,
488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 556_G|T, 565_C|T, 577_A|C, 584_T|C, 589_A|G, 598_C|T, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 631_C|T,
649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 676_C|T, 682_G|A, 694_T|C, 700_C|T, 703_A|C, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T,
781_T|C, 784_G|A, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G,
931_C|T, 934_G|C, 937_T|A, 943_A|G, 946_G|A, 949_C|T, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G,
1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1138_G|A, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1183_T|C, 1207_A|T,
1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T,
1333_T|C, 1339_C|T, 1345_C|T, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1432_T|C, 1435_C|T, 1441_T|C, 1474_C|T, 1482_TC|CT, 1491_T|C,
1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1525_G|A, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1546_T|C, 1558_C|T, 1561_T|A, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A,
1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1696_T|C, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1726_A|G, 1729_C|A,
1738_A|G, 1741_A|T, 1744_T|C, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1781_G|A, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1813_T|C,
1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1900_C|T, 1915_C|A, 1926_TT|CA, 1936_G|A,
1942_A|G, 1946_T|C, 1951_A|G, 1957_C|A, 1960_C|T, 1969_T|C, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A,
2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2110_G|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2131_T|C, 2146_A|G, 2149_G|A,
2152_A|C, 2164_A|G, 2188_A|G, 2193_TG|CA, 2197_A|G, 2215_A|G, 2218_CA|TG, 2221_C|T, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A,
2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_GC|AT, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2407_C|T, 2410_G|A, 2413_A|T, 2419_G|C,
2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|T, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A,
2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2611_G|A, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2650_G|A, 2687_T|C, 2695_A|G, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G,
2722_G|T, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2827_C|T,
2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2894_C|A, 2896_G|A, 2899_C|G, 2920_G|A, 2932_G|A, 2947_A|T, 2962_C|T, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 3002_T|C, 3013_G|A, 3019_C|T,
3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A,
3127_G|A, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A,
3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3343_A|G, 3346_C|T, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3388_T|C,
3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3446_C|T, 3448_C|T, 3454_A|G, 3457_T|C, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|T, 3484_T|C, 3490_G|C, 3496_C|A,
3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_T|A, 3529_T|C, 3535_T|A, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C,
3632_C|T, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3664_G|A, 3667_A|G, 3679_T|G, 3682_G|T, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T,
3727_T|C, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3853_G|A, 3860_G|A, 3868_C|A,
3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|A, 3898_T|C, 3901_C|A, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C,
4021_TG|CA, 4024_C|T, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4142_C|T,
4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4267_T|A, 4273_GA|AG,
4276_T|C, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|A, 4360_A|T, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4396_C|T, 4399_C|T, 4409_G|A,
4411_A|T, 4429_G|A, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4471_T|C, 4480_C|T, 4483_GC|AT, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4510_T|C, 4519_T|A, 4522_TC|CT, 4525_G|A,
4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4557_G|A, 4564_T|C, 4567_G|A, 4576_G|A, 4583_T|C, 4585_G|C, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C,
4645_T|C, 4654_C|T, 4660_A|C, 4663_C|A, 4667_T|C, 4669_G|A, 4672_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4756_G|A,
4759_T|C, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4801_C|T, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|G, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC,
4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|C, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4975_T|C, 4984_A|T, 4987_A|T,
4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A,
5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C,
5251_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5269_T|C, 5284_G|A, 5287_T|C, 5297_C|T, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5332_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C,
5362_C|T, 5368_C|T, 5374_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5393_T|C, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A,
5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5509_A|G, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5557_A|G, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T,
5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5656_C|T, 5662_A|C, 5668_C|T, 5674_A|C, 5683_A|G, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A,
5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C,
5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 6004_T|C, 6023_A|G, 6025_T|C, 6031_C|A, 6037_C|T, 6043_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G,
6097_C|T, 6100_C|T, 6106_C|T, 6112_CG|TA, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A,
6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6313_T|C, 6316_A|G, 6322_G|A, 6334_T|C, 6346_A|C, 6352_G|A, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG,
6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6427_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG,
6517_C|T, 6520_C|T, 6523_T|C, 6527_T|C, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T,
6664_A|G, 6667_C|T, 6673_T|C, 6682_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6709_T|C, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G,
6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6835_A|G, 6841_A|T, 6844_C|T, 6847_C|T, 6850_T|C, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G,
6913_C|T, 6916_A|G, 6919_G|A, 6934_G|A, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6979_TC|CT, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7036_C|T,
7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A,
7177_G|T, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|T, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T,
7327_T|G, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7441_C|T, 7447_C|T, 7453_G|A, 7463_T|C, 7480_C|G,
7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7561_A|T, 7571_A|C, 7579_TC|CT, 7597_A|T, 7612_A|C, 7618_G|A, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G,
7657_T|C, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7738_G|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A,
7765_TT|CC, 7768_G|A, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7858_A|G, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G,
7888_C|T, 7891_A|T, 7900_T|C, 7906_C|T, 7915_G|A, 7918_A|G, 7920_AG|GA, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7990_T|C, 7996_A|G, 8011_C|T,
8014_C|T, 8020_C|T, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|TC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A,
8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8154_CT|GC, 8161_G|C, 8167_C|A, 8169_A|G, 8188_A|G, 8209_T|G, 8212_C|T, 8215_G|A, 8218_A|G, 8221_G|A, 8224_AT|GC, 8245_C|T,
8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|A, 8317_C|T, 8321_G|A, 8324_A|G, 8326_A|G, 8329_T|C, 8338_C|T,
8354_C|T, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8407_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG,
8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_CA|TG, 8536_C|T, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8569_C|T, 8574_A|G,
8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|C, 8605_T|C, 8608_T|G, 8611_T|G, 8614_T|C, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G,
8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8788_C|T, 8815_AC|GT, 8821_C|T, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8854_T|C, 8866_T|C, 8874_A|T, 8911_G|A, 8923_C|T,
8926_A|G, 8939_C|T, 8941_G|A, 8950_A|G, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|T,
9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T,
9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9324_AA|GG, 9328_AC|GT, 9331_G|A, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G,
9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9454_A|G, 9463_T|C, 9466_TC|CT, 9481_C|T, 9485_T|C, 9493_C|T, 9497_T|C, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G,
9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|C, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T,
9670_C|T, 9679_C|T, 9688_T|C, 9691_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9745_G|A, 9749_A|G, 9754_T|C, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_G|A, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T,
9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9862_A|G, 9865_G|A, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T,
9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10047_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G,
10148_A|C, 10154_G|A, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C,
10255_T|C, 10261_A|G, 10270_T|C, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10303_C|T
Case 3 (A.1): MW158338.1
| Target: 835 samples | Number of changes: 1421 | |
| BC: A.1.NmC2 + A.1 + A.1.NmC2 | BC BR: 729-730, 1389-1390 | BC BR coord: 5403 - 5404, 10381 - 10382 |
| Direction L1: << | Initial region span: 1-271,736-1389,1390-1421 | Gap history (edge excluded): 271-1390 -> 271-736 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 5.64e-48 | |
| Rec. model vs L1: 5.97e-84 | Rec. model vs L2: 2.83e+23 | |
| Flags: Model_2BP_Best | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
271 |
20.872424 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
736 |
13.089629 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
1389 |
-10.000000 |
-96.518957 |
1911.037913 |
5.607385e-48 |
|
|
|
| A.1.NmC1 |
0 |
1389 |
-10.000000 |
-1638.363688 |
4994.727375 |
0.000000e+00 |
|
|
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1390 |
24.431731 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 80_A|G, 108_C|T, 117_AC|GA, 130_T|C, 166_A|T, 226_C|T, 247_T|C, 260_A|G, 262_C|T, 271_T|C, 280_CA|TG, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G,
332_C|T, 346_A|G, 363_GG|AC, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 433_TC|CT, 448_C|T, 451_A|G, 455_T|C, 464_C|T, 467_T|C, 473_A|G, 475_G|T,
488_T|C, 496_G|C, 514_C|T, 517_A|G, 523_G|C, 547_A|C, 550_C|T, 556_G|T, 565_C|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 598_C|T, 604_C|T, 613_A|G, 628_T|C, 631_C|T, 634_T|C, 637_C|T, 649_G|A,
655_A|T, 664_T|A, 676_C|T, 691_C|T, 694_T|C, 700_C|T, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|T, 757_C|T, 763_T|C, 766_G|A, 775_C|T, 784_G|A, 790_C|T, 802_A|G,
814_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 859_G|A, 877_A|G, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 931_C|T, 934_G|C, 937_T|A, 961_T|C, 964_G|A,
970_C|T, 973_A|G, 985_T|A, 991_T|A, 1021_T|C, 1024_A|G, 1030_T|C, 1036_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1102_C|A, 1106_C|T, 1111_G|A, 1117_A|T,
1127_A|G, 1138_G|A, 1140_TG|CA, 1147_A|G, 1158_A|G, 1165_TC|CT, 1168_C|A, 1171_TC|CA, 1181_A|G, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1222_T|C, 1228_G|A, 1231_C|T, 1237_G|A,
1240_C|T, 1243_T|C, 1246_G|C, 1255_C|A, 1261_T|C, 1279_C|A, 1285_C|T, 1294_A|G, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1393_A|G, 1399_A|G, 1408_A|C, 1411_G|A,
1423_A|G, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1482_TC|CT, 1491_T|C, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1522_G|A, 1525_G|A, 1528_A|G, 1531_T|C, 1534_G|A, 1544_G|A,
1546_T|C, 1552_T|C, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1578_G|A, 1585_A|T, 1606_G|A, 1609_C|T, 1621_A|T, 1642_G|T, 1651_A|G, 1669_C|G, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1705_AC|GT,
1708_G|A, 1714_G|T, 1723_G|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1765_T|C, 1768_A|G, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1813_T|C,
1816_T|C, 1819_T|A, 1822_C|T, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1900_C|T, 1915_C|A, 1926_TT|CG, 1936_G|A, 1942_A|G, 1946_T|C, 1951_A|G,
1954_A|G, 1957_C|A, 1969_T|C, 1978_A|G, 1981_A|C, 1993_T|C, 2002_AA|GG, 2008_T|C, 2011_A|G, 2020_G|A, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2041_C|T, 2044_A|C, 2050_T|C, 2063_C|T,
2080_A|T, 2083_T|C, 2089_A|G, 2101_T|C, 2104_C|A, 2110_G|A, 2112_G|C, 2116_A|G, 2125_TC|CT, 2128_C|G, 2131_T|C, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2176_T|C, 2188_A|G, 2193_TG|CA,
2201_C|T, 2209_C|T, 2215_A|G, 2218_CA|TG, 2221_C|T, 2230_T|C, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2275_T|A, 2278_T|C, 2281_G|T, 2302_G|A, 2305_GC|AT, 2308_A|G,
2314_C|T, 2322_A|G, 2341_C|T, 2349_C|T, 2353_A|T, 2356_T|C, 2380_A|G, 2401_C|T, 2408_T|C, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2452_G|T, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|T, 2488_G|A,
2494_G|A, 2497_C|T, 2500_A|G, 2503_T|C, 2506_T|C, 2515_A|T, 2524_C|T, 2527_T|A, 2533_C|T, 2548_C|T, 2554_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G,
2620_CC|TT, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2650_G|A, 2686_TT|CC, 2692_G|A, 2695_A|G, 2698_C|T, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT,
2737_TG|CA, 2740_T|C, 2752_A|G, 2755_T|A, 2773_T|C, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2794_T|C, 2803_T|C, 2809_T|C, 2812_G|A, 2818_T|C, 2827_C|T, 2833_G|A, 2836_G|A, 2878_A|G, 2881_C|T,
2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2914_G|A, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 3001_CT|TC, 3019_C|T, 3034_C|A, 3040_C|G, 3043_T|C, 3064_T|C,
3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3104_G|A, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3178_C|T, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T,
3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3238_T|C, 3244_G|A, 3247_C|T, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3319_CA|AG,
3331_A|G, 3334_G|T, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|C, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3412_T|A, 3421_C|T, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3457_T|C, 3465_G|A, 3469_A|G,
3472_G|A, 3478_A|C, 3481_C|T, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3508_T|C, 3514_A|G, 3517_A|T, 3523_T|A, 3529_T|C, 3535_T|G, 3556_A|C, 3569_C|T, 3571_A|G, 3577_A|G, 3589_A|C, 3598_G|A,
3604_T|C, 3610_AG|CA, 3613_A|G, 3620_T|C, 3622_G|A, 3628_A|C, 3632_C|T, 3634_G|A, 3637_C|T, 3640_G|A, 3646_A|G, 3649_TC|CA, 3652_CC|TT, 3655_T|G, 3658_T|C, 3662_C|T, 3667_A|G, 3679_TG|CA,
3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3715_A|G, 3718_C|T, 3733_G|C, 3739_T|C, 3742_T|C, 3745_C|T, 3748_T|C, 3751_A|G, 3757_A|G, 3763_G|A, 3772_C|T, 3782_C|T, 3784_C|A, 3790_C|G, 3793_A|G,
3802_T|C, 3814_T|C, 3824_C|T, 3826_A|G, 3829_A|G, 3832_A|C, 3851_T|C, 3860_G|A, 3868_C|G, 3872_C|T, 3883_T|C, 3886_A|G, 3895_T|A, 3898_T|C, 3901_C|T, 3910_G|A, 3928_T|C, 3934_G|A, 3947_AC|GT,
3950_A|G, 3953_T|C, 3959_C|T, 3961_C|G, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4036_A|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T,
4078_G|A, 4081_T|C, 4087_T|C, 4099_C|T, 4105_C|G, 4111_T|C, 4115_C|T, 4120_C|A, 4129_A|G, 4141_CC|TT, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4180_G|A, 4183_T|C, 4198_G|A, 4201_A|G,
4204_C|T, 4210_A|T, 4219_A|C, 4222_G|A, 4228_GC|CT, 4234_A|C, 4237_A|T, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4276_T|G, 4285_A|G, 4289_C|A, 4291_C|T,
4306_T|C, 4324_G|T, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|A, 4354_A|T, 4360_A|T, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4409_G|A, 4411_A|T, 4420_A|G, 4435_G|A,
4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4471_T|C, 4480_C|T, 4483_GC|AT, 4489_CT|TC, 4495_T|C, 4498_G|A, 4501_T|C, 4504_CC|TA, 4507_C|T, 4513_A|G, 4519_T|A, 4522_TC|CT, 4525_G|A, 4531_C|T,
4540_G|C, 4544_C|T, 4549_T|C, 4557_GG|AA, 4564_T|C, 4576_G|A, 4579_T|C, 4583_T|C, 4585_G|T, 4591_T|C, 4594_T|C, 4600_T|A, 4606_G|A, 4609_C|T, 4612_C|T, 4618_A|G, 4625_C|T, 4627_T|C, 4654_C|T,
4663_C|A, 4667_T|C, 4669_G|A, 4672_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4708_G|T, 4711_G|C, 4720_A|G, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4759_T|C, 4762_C|G,
4765_G|A, 4772_A|G, 4780_T|C, 4792_A|C, 4807_C|T, 4820_T|C, 4834_A|G, 4852_G|A, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4897_C|G, 4900_C|T, 4903_C|T, 4906_G|A, 4912_A|G, 4915_G|A,
4919_T|C, 4927_A|G, 4930_G|T, 4939_G|A, 4954_T|G, 4957_C|T, 4969_T|C, 4975_T|C, 4984_A|C, 4987_A|T, 4993_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5047_C|T,
5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5098_A|G, 5101_A|G, 5104_G|A, 5110_G|A, 5113_C|G, 5116_A|G, 5119_G|A, 5122_C|T, 5143_A|G, 5153_G|A, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T,
5212_C|T, 5224_G|A, 5239_T|A, 5248_G|A, 5251_C|T, 5257_C|T, 5260_G|A, 5269_T|C, 5284_G|A, 5287_T|C, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5323_T|C, 5326_T|C, 5335_C|T, 5338_C|T,
5344_G|A, 5347_A|G, 5353_C|T, 5368_C|T, 5374_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5393_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5440_A|G, 5446_T|C, 5458_A|G,
5464_C|T, 5470_C|A, 5473_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5509_A|G, 5530_A|T, 5539_G|T, 5542_T|A, 5545_G|A, 5575_T|G, 5578_A|G, 5584_A|G, 5602_A|T, 5605_C|T, 5626_G|C, 5639_C|T,
5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5680_C|T, 5683_A|G, 5692_T|C, 5701_T|A, 5713_T|C, 5716_G|A, 5737_CC|GT, 5743_C|T, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C,
5800_A|T, 5821_A|G, 5836_T|C, 5839_C|T, 5846_C|A, 5854_G|A, 5860_C|T, 5872_T|C, 5875_G|A, 5878_T|G, 5884_T|C, 5917_G|A, 5923_T|C, 5926_T|C, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C,
5962_C|T, 5968_G|A, 5971_A|G, 5974_T|C, 5986_T|C, 5989_A|G, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|T, 6034_C|T, 6037_C|T, 6043_C|T, 6047_T|C, 6055_C|T, 6065_T|C, 6067_G|A, 6097_C|T,
6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6223_G|A, 6235_C|T, 6241_T|C, 6244_T|A,
6250_G|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|G, 6352_G|A, 6358_G|A, 6361_C|T, 6373_T|C, 6388_A|G, 6400_T|C,
6406_GT|TG, 6412_A|C, 6415_T|C, 6418_T|A, 6427_T|C, 6430_A|G, 6439_G|A, 6442_A|G, 6451_A|G, 6457_A|G, 6478_T|A, 6481_T|C, 6490_T|C, 6493_A|G, 6508_A|G, 6514_T|C, 6517_C|T, 6523_T|C, 6527_T|C,
6530_C|T, 6532_C|G, 6550_T|C, 6569_C|T, 6583_T|C, 6597_T|C, 6599_G|A, 6611_A|G, 6613_A|T, 6622_A|G, 6625_A|G, 6634_G|T, 6637_A|G, 6643_C|T, 6658_T|C, 6664_A|G, 6667_C|T, 6673_T|C, 6682_T|C,
6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6733_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6814_A|G, 6817_GT|AA,
6823_C|T, 6826_A|G, 6832_C|T, 6835_A|G, 6841_A|T, 6844_C|T, 6850_T|C, 6859_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6883_A|G, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6934_G|A,
6940_CT|TG, 6943_A|G, 6952_T|C, 6956_G|A, 6958_TT|CG, 6970_T|C, 6976_G|A, 6979_TC|CT, 6991_G|A, 6994_A|G, 7000_T|C, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C,
7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7084_TC|CT, 7096_A|C, 7114_CC|TT, 7117_T|G, 7120_T|A, 7123_C|T, 7135_G|T, 7138_A|T, 7141_A|G, 7149_A|G, 7156_T|C, 7171_G|T, 7174_G|A,
7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T, 7243_C|T, 7247_T|A, 7252_C|T, 7256_T|C, 7258_A|G, 7267_C|T, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|A, 7369_T|G,
7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_CC|TT, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7435_T|C, 7438_T|C, 7447_C|T, 7450_A|G, 7453_G|A, 7463_T|C, 7480_C|G,
7483_A|G, 7492_T|A, 7495_CT|TC, 7498_A|G, 7527, 7531_.|G, 7552_C|G, 7555_C|T, 7571_A|C, 7579_TC|CT, 7597_A|T, 7612_A|C, 7624_AA|GT, 7630_A|G, 7634_C|A, 7651_A|G, 7654_A|G, 7658_T|C, 7663_T|C,
7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_G|A, 7712_T|C, 7726_C|A, 7738_G|A, 7750_T|G, 7753_G|A, 7756_A|T, 7759_CA|TC, 7762_G|A, 7765_TT|CC, 7768_G|A, 7771_C|T,
7792_G|A, 7798_G|T, 7801_C|G, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7861_T|A, 7869_T|C, 7876_G|A, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7906_C|T, 7915_G|A,
7918_A|G, 7921_G|A, 7924_A|G, 7939_A|G, 7942_A|T, 7948_T|C, 7951_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7990_T|C, 7996_A|G, 8011_C|T, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G,
8053_A|G, 8065_T|A, 8071_T|C, 8080_A|G, 8089_AT|TC, 8098_G|A, 8101_C|G, 8104_A|T, 8107_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8154_CT|GC, 8161_G|T, 8167_C|A, 8169_A|G,
8173_C|T, 8188_A|G, 8209_T|G, 8212_C|T, 8215_G|A, 8218_A|G, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|T, 8263_C|T, 8269_C|T, 8275_G|A, 8278_T|C, 8281_C|A, 8284_T|C, 8290_A|G, 8296_C|T, 8320_TG|CA,
8326_A|G, 8329_T|C, 8344_A|G, 8356_G|A, 8380_T|A, 8383_A|C, 8392_C|T, 8395_G|C, 8398_G|A, 8401_T|C, 8404_C|T, 8407_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8452_C|A, 8455_G|T, 8458_C|A, 8460_AA|GG,
8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8500_G|A, 8504_C|T, 8505_.|C, 8507, 8510_T|A, 8518_T|C, 8533_C|T, 8551_C|T, 8557_T|C, 8563_C|T, 8574_A|G, 8578_C|T, 8584_A|G, 8587_T|C,
8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8614_T|C, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8741_G|A,
8743_G|A, 8746_A|G, 8749_T|G, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|C, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8854_T|C, 8866_T|C, 8874_A|T, 8884_A|G,
8905_C|T, 8911_G|A, 8914_T|C, 8923_C|T, 8926_A|G, 8929_G|A, 8939_C|T, 8941_G|A, 8950_A|G, 8954_A|C, 8956_GAA|ACG, 8968_A|G, 8971_A|G, 8998_C|T, 9010_A|G, 9019_G|A, 9022_G|A, 9037_G|A,
9040_A|G, 9043_A|G, 9046_G|A, 9052_C|T, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9104_C|T, 9112_C|T, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T,
9184_A|G, 9187_A|C, 9190_T|C, 9199_A|G, 9202_C|T, 9212_A|C, 9214_G|A, 9217_T|A, 9229_C|T, 9232_C|T, 9235_G|A, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_GA|AG, 9299_T|C,
9307_C|T, 9313_C|T, 9319_T|C, 9324_A|G, 9328_A|G, 9331_G|A, 9334_A|G, 9336_AA|TG, 9361_G|A, 9364_C|T, 9367_A|G, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|A, 9424_T|C, 9430_A|G,
9445_C|T, 9454_A|G, 9457_G|A, 9460_T|C, 9466_TC|CT, 9472_C|T, 9481_C|T, 9485_T|C, 9490_A|G, 9497_T|C, 9505_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA,
9562_A|G, 9565_TC|CT, 9569_A|G, 9573_GG|AA, 9577_G|T, 9590_A|G, 9598_C|T, 9601_A|C, 9607_C|T, 9610_A|G, 9613_G|A, 9625_G|A, 9637_C|T, 9646_G|T, 9649_C|T, 9658_C|T, 9673_C|T, 9703_C|T,
9709_TA|AC, 9745_G|A, 9749_A|G, 9754_T|C, 9766_G|A, 9769_C|T, 9775_T|C, 9796_A|G, 9799_G|A, 9817_G|A, 9820_T|C, 9829_T|C, 9835_A|G, 9838_A|T, 9844_C|T, 9850_C|A, 9865_G|A, 9880_C|T, 9883_C|T,
9895_G|A, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9938_C|T, 9946_T|C, 9949_T|C, 9955_A|G, 9970_AC|GT, 9973_G|A, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C,
10030_A|G, 10036_GA|TG, 10066_G|A, 10072_C|T, 10096_A|G, 10103_A|G, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10156_C|T, 10159_T|C, 10162_T|C,
10165_A|G, 10180_C|T, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|G, 10249_C|A, 10252_T|C, 10259_C|A, 10261_A|G,
10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10291_C|T, 10294_C|T, 10297_A|G, 10303_C|T, 10309_C|T, 10312_G|A, 10315_T|C, 10331_C|T, 10336_A|G, 10338_TG|CT, 10348_T|C, 10351_C|T, 10355_A|G,
10361_A|G, 10363_10372, 10374_10375, 10378_G|A, 10382, 10385, 10391_10397, 10403_C|T, 10406_10415, 10420_10429, 10431_A|G, 10434_10436, 10439_10442, 10444_10445, 10450_10463, 10470_10474,
10475_A|T, 10522, 10524_G|A, 10533_A|T, 10535_T|A, 10549_C|T, 10553_A|G, 10555_AC|GT, 10558_A|G, 10562_T|C, 10605_A|C, 10607_C|T, 10635_G|A, 10639_C|T, 10647_C|T, 10657_.|C, 10659_G|A,
10681_CT|TC, 10739_A|T, 10742_T|C
Case 3 (A.1): MW158339.1
| Target: 835 samples | Number of changes: 1432 | |
| BC: A.1.NmC2 + A.1 | BC BR: 3-4 | BC BR coord: 129 - 130 |
| Direction L1: << | Initial region span: 1-3,4-1432 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 2.36e-04 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
3 |
5.083407 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
4 |
38.911599 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 80_A|G, 108_C|T, 118_C|A, 130_T|C, 166_A|T, 226_C|T, 247_T|C, 260_262, 263_T|G, 272_.|TCT, 280_CA|TG, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_AA|GG,
332_C|T, 346_A|G, 363_GG|AC, 367_A|G, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 433_TC|CT, 448_C|T, 451_A|G, 455_T|C, 464_C|T, 467_T|C, 473_A|G, 475_G|T, 488_T|C,
496_G|C, 514_C|T, 517_A|G, 523_G|T, 547_A|C, 550_C|T, 556_G|T, 565_C|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 613_A|G, 628_T|C, 631_C|T, 634_T|C, 637_C|T, 649_G|A, 655_A|T, 664_T|A,
676_C|T, 682_G|A, 691_C|T, 700_C|T, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|T, 757_C|T, 763_T|C, 766_G|A, 772_A|G, 775_C|T, 781_T|C, 784_G|A, 790_C|T, 802_A|G,
814_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 841_G|A, 844_T|C, 847_G|A, 854_T|C, 856_C|G, 859_G|A, 874_T|C, 877_A|G, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 931_C|T, 934_G|C, 937_T|A,
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8656_A|G, 8671_T|A, 8677_A|G, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8741_G|A, 8743_G|A, 8746_A|G, 8749_T|G, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|C, 8788_C|T, 8792_C|T, 8815_A|G, 8830_A|G,
8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8854_T|C, 8857_T|C, 8866_T|C, 8874_A|T, 8884_A|G, 8905_C|T, 8911_G|A, 8914_T|C, 8923_C|T, 8926_A|G, 8929_G|A, 8939_C|T, 8941_G|A, 8953_AA|GC,
8956_GAA|ACG, 8968_A|G, 8971_A|G, 9010_A|G, 9019_G|A, 9022_G|A, 9037_G|A, 9040_A|G, 9043_A|G, 9046_G|A, 9052_C|T, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9097_T|C, 9112_C|T, 9127_T|C,
9133_T|A, 9142_A|G, 9151_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9194_A|C, 9199_A|G, 9202_C|T, 9212_A|C, 9214_G|A, 9217_T|A, 9229_C|T, 9232_C|T, 9235_G|A,
9244_C|A, 9259_G|A, 9263_A|G, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_GA|AG, 9299_T|C, 9304_C|T, 9307_C|T, 9313_C|T, 9319_T|C, 9324_A|G, 9328_A|G, 9331_G|A, 9334_A|G, 9336_AA|TG,
9361_G|A, 9364_C|T, 9367_A|G, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|A, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9457_G|A, 9460_T|C, 9466_T|C, 9472_C|T, 9481_C|T, 9485_T|C,
9490_A|G, 9497_T|C, 9505_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9565_TC|CT, 9569_A|G, 9573_GG|AA, 9577_G|C, 9590_A|G, 9598_C|T, 9601_A|C,
9607_C|T, 9610_A|G, 9625_G|A, 9637_C|T, 9643_T|C, 9646_G|T, 9649_C|T, 9658_C|T, 9679_C|T, 9703_C|T, 9709_TA|AC, 9745_G|A, 9749_A|G, 9754_T|C, 9766_G|A, 9769_C|T, 9775_T|C, 9787_C|T, 9796_A|G,
9799_G|A, 9802_G|A, 9817_G|A, 9820_T|C, 9835_A|G, 9838_A|T, 9844_C|T, 9850_C|A, 9865_G|A, 9880_C|T, 9895_G|A, 9898_A|G, 9904_T|G, 9910_C|T, 9916_A|G, 9922_T|C, 9938_C|T, 9946_T|C, 9949_T|C,
9955_A|G, 9970_AC|GT, 9973_G|A, 9977_T|C, 9985_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10066_G|A, 10072_C|T, 10096_A|G, 10103_A|G,
10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10156_C|T, 10159_T|C, 10162_T|C, 10165_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T,
10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|G, 10249_C|A, 10252_T|C, 10259_C|A, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10291_C|T, 10294_C|T, 10297_A|G, 10312_G|A,
10315_T|C, 10336_A|G, 10338_TG|CC, 10348_T|C, 10351_C|T, 10355_A|G, 10361_10369, 10371_10372, 10374_10381, 10383_10387, 10390_10397, 10402_10412, 10419_10421, 10424_10427, 10430_10440,
10447_10450, 10452_10454, 10457, 10458_C|T, 10460_C|T, 10463_T|A, 10466_A|G, 10470_G|A, 10475_A|T, 10522, 10524_G|A, 10533_A|T, 10535_T|G, 10549_C|T, 10555_AC|GT, 10558_A|G, 10562_T|C,
10605_A|C, 10607_C|T, 10635_G|A, 10647_C|T, 10658_.|C, 10659_AG|TA, 10681_CT|TC, 10742_T|C, 10783_C|T, 10785_C|G, 10788_C|T, 10794_C|A, 10799_G|A
Case 3 (A.1): MW158343.1
| Target: 835 samples | Number of changes: 1464 | |
| BC: A.1.NmC2 + A.1 + A.1.NmC2 | BC BR: 357-358, 1438-1439 | BC BR coord: 2637 - 2638, 10430 - 10431 |
| Direction L1: >> | Initial region span: 1-357,358-363,1439-1464 | Gap history (edge excluded): 357-1439 -> 363-1439 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.21e-48 | |
| Rec. model vs L1: 5.24e-134 | Rec. model vs L2: 4.76e-08 | |
| Flags: Model_2BP_Best | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
357 |
25.233308 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
363 |
0.817234 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
395 |
-2.104146 |
-170.131497 |
2864.262995 |
2.223504e-48 |
|
|
|
| A.1.NmC1 |
0 |
360 |
-9.862128 |
-1395.366958 |
5314.733916 |
0.000000e+00 |
|
|
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1439 |
18.643849 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 80_A|G, 108_C|T, 118_C|A, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 280_CA|TG, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G,
346_A|G, 352_G|A, 358_T|C, 361_A|G, 363_G|A, 367_A|G, 370_C|A, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 448_C|T, 451_A|G, 455_T|C, 467_T|C, 473_ACG|GTT,
488_T|C, 496_G|C, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 532_G|A, 538_C|T, 547_A|C, 550_C|T, 556_G|T, 565_C|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 598_C|T, 604_C|T, 610_C|T, 613_A|C, 628_T|C,
631_C|T, 649_G|A, 655_A|T, 664_T|A, 670_C|T, 676_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_725, 727_728, 732_736, 747_.|GTCCAGAAG, 760_G|A, 763_T|C, 766_G|A, 775_C|T,
781_T|C, 784_G|A, 802_A|G, 811_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 859_G|A, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G,
910_A|G, 922_G|A, 931_C|T, 934_G|C, 937_T|A, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 988_A|G, 991_T|A, 1024_A|G, 1030_T|C, 1036_T|A, 1042_T|C, 1046_C|T,
1051_G|A, 1054_A|G, 1057_C|T, 1072_T|G, 1081_T|C, 1094_T|C, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1138_G|A, 1140_TG|CA, 1147_A|G, 1153_T|C, 1156_C|T, 1158_A|G, 1165_TC|CT, 1168_C|A,
1172_C|A, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1249_C|T, 1255_C|A, 1261_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1294_A|G, 1300_G|A,
1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1339_C|T, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A,
1474_C|T, 1482_TC|CT, 1489_C|T, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1504_A|G, 1507_T|C, 1516_A|G, 1525_G|A, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1546_T|C, 1558_C|T, 1561_T|A,
1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|C, 1642_G|C, 1666_T|C, 1669_C|G, 1675_T|C, 1678_A|G, 1681_T|C, 1684_G|A, 1690_C|T, 1693_C|A, 1696_T|C,
1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1720_C|T, 1723_G|A, 1729_C|A, 1732_C|T, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1771_G|A, 1781_G|A, 1785_A|G, 1789_C|G, 1792_T|G,
1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1813_T|C, 1816_T|C, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C,
1900_C|T, 1915_C|A, 1926_TT|CA, 1936_G|A, 1939_G|A, 1942_A|G, 1946_T|C, 1951_A|G, 1957_C|A, 1969_T|C, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2023_T|C, 2029_T|C,
2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2047_C|T, 2050_T|C, 2063_C|T, 2068_T|C, 2080_A|T, 2083_T|C, 2089_A|G, 2101_T|C, 2104_C|A, 2110_G|A, 2112_G|C, 2116_A|G, 2125_TC|CT, 2128_C|G, 2146_A|G,
2149_G|A, 2152_A|C, 2164_A|G, 2188_A|G, 2193_T|C, 2197_A|G, 2215_A|G, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2275_T|A,
2278_T|C, 2281_G|T, 2290_C|T, 2299_T|C, 2302_G|A, 2305_GC|AT, 2308_A|G, 2314_C|T, 2322_A|G, 2341_C|T, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A,
2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2554_C|T, 2563_A|G, 2566_T|C,
2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2611_G|A, 2621_C|T, 2623_A|G, 2626_T|C, 2632_T|C, 2638_C|T, 2641_T|G, 2644_G|A, 2650_G|A, 2686_TT|CC, 2695_A|G, 2698_C|T,
2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2752_A|G, 2755_T|A, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2794_T|C,
2809_T|C, 2812_G|A, 2827_C|T, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|T, 2947_A|T, 2950_C|A, 2962_C|T, 2980_C|T, 2983_A|G,
2986_C|T, 2989_C|T, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3098_T|C, 3103_GG|AA, 3107_T|C,
3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3178_C|T, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C,
3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3303_GC|AT, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3340_A|G, 3343_A|G, 3349_A|G,
3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3391_C|T, 3395_T|G, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3457_T|C, 3460_G|A, 3465_G|A,
3469_A|G, 3472_G|A, 3478_A|C, 3481_C|T, 3484_T|C, 3490_G|T, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G,
3589_A|C, 3598_GT|AC, 3601_G|A, 3610_AG|CA, 3613_A|G, 3619_C|T, 3622_G|A, 3628_A|C, 3632_C|T, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C,
3667_A|G, 3679_T|G, 3682_G|T, 3691_T|C, 3706_C|T, 3715_A|G, 3718_C|T, 3733_G|C, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3826_A|G, 3829_A|G, 3832_A|C,
3850_C|T, 3853_G|A, 3860_G|A, 3868_C|A, 3871_C|T, 3881_T|C, 3883_T|C, 3886_A|G, 3895_T|A, 3901_C|T, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GG, 3953_T|C, 3959_C|T, 3961_C|G, 3982_C|G, 3985_T|A,
4006_CG|TA, 4013_4014, 4020_G|C, 4024_.|AT, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4075_G|A, 4081_T|C, 4087_T|C, 4099_C|T, 4105_C|G, 4117_G|A,
4120_CT|AC, 4129_A|G, 4132_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|T, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C,
4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4276_T|C, 4289_C|A, 4301_C|T, 4306_T|C, 4309_C|T, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|A, 4360_A|T, 4372_G|A, 4375_G|T, 4384_C|T,
4387_G|A, 4393_C|T, 4399_C|T, 4409_G|A, 4411_A|T, 4420_A|G, 4429_G|A, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_GC|AT, 4489_C|T, 4495_T|C, 4498_G|A, 4504_CC|TA,
4510_T|C, 4519_T|A, 4522_TC|CT, 4525_G|A, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4576_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A,
4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4654_C|T, 4663_C|A, 4667_T|C, 4669_G|A, 4672_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4720_A|G, 4735_A|G, 4741_A|G,
4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4759_T|C, 4765_G|A, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A,
4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4930_G|T, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4975_T|C, 4984_A|T, 4987_A|T,
4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5098_A|G, 5101_A|G, 5104_G|A,
5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5179_G|A, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G,
5239_T|A, 5246_T|C, 5251_C|T, 5257_C|T, 5260_G|A, 5266_T|G, 5269_T|C, 5284_G|A, 5287_T|C, 5297_C|T, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5323_T|C, 5326_T|C, 5335_C|T, 5338_C|T,
5344_G|A, 5346_G|A, 5359_T|C, 5362_C|T, 5368_C|T, 5374_C|T, 5380_A|G, 5383_T|A, 5393_T|C, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5446_T|C, 5452_G|A,
5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5560_T|C, 5572_T|C, 5575_T|G, 5584_A|G, 5590_T|C,
5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5639_C|T, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5695_C|T, 5701_T|A, 5713_T|C, 5716_G|A, 5731_G|A, 5737_C|G, 5760_G|A, 5773_G|A, 5776_A|T,
5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_AT|CC, 5821_A|G, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5852_C|T, 5860_C|T, 5863_G|A, 5867_G|T, 5869_T|C, 5872_T|C, 5875_G|A, 5905_G|A, 5923_T|C,
5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 5998_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|A, 6034_C|T,
6037_C|T, 6043_C|T, 6047_T|C, 6065_T|C, 6067_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C,
6187_A|G, 6190_A|G, 6196_G|A, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6241_T|C, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A,
6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_A|G, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C,
6485_C|T, 6490_T|C, 6493_A|G, 6502_A|C, 6508_A|G, 6514_T|C, 6517_C|T, 6523_T|C, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6597_T|C, 6611_A|G, 6613_A|T, 6622_A|G, 6625_A|G, 6631_A|G,
6634_G|T, 6643_C|T, 6667_C|T, 6673_T|C, 6682_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6757_TG|CA, 6766_C|A, 6772_C|T, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G,
6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6835_A|G, 6841_A|T, 6844_C|T, 6847_C|T, 6850_T|C, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G,
6913_C|T, 6916_A|G, 6919_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6979_TC|CT, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C,
7030_A|G, 7039_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|A, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7162_G|T,
7171_G|T, 7174_GC|AT, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T, 7247_T|A, 7252_C|T, 7255_TT|CC, 7258_A|G, 7267_C|T, 7285_G|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T,
7318_CG|TA, 7324_C|T, 7327_T|G, 7366_T|C, 7369_T|A, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7423_C|T, 7427_C|T, 7429_A|G, 7447_C|T, 7453_G|A, 7463_T|C, 7480_C|G,
7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7516_A|G, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7648_T|C, 7651_A|G, 7654_A|G,
7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7693_G|A, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7738_G|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A,
7765_TT|CC, 7768_G|A, 7771_C|T, 7789_C|T, 7792_G|A, 7798_G|T, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7900_T|C,
7906_C|T, 7915_G|A, 7918_A|G, 7920_AG|GA, 7936_C|T, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7990_T|C, 7996_A|G, 8011_C|T, 8020_C|T, 8023_A|G,
8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8050_G|A, 8053_A|G, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|TC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8120_G|A, 8134_T|C, 8140_A|C, 8143_A|G,
8151_C|T, 8152_.|A, 8155, 8161_G|C, 8167_C|A, 8169_A|G, 8176_T|C, 8188_A|G, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|T, 8263_C|T, 8272_C|T, 8275_G|A,
8281_C|T, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|A, 8320_TG|CA, 8324_A|G, 8326_A|G, 8329_T|C, 8338_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8392_C|T, 8395_G|T,
8398_G|A, 8401_T|C, 8404_C|T, 8407_CA|TG, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A,
8494_A|G, 8500_G|A, 8505_TGA|CCG, 8509_CT|TA, 8518_TT|CC, 8536_C|T, 8551_C|T, 8554_C|T, 8557_T|C, 8560_C|T, 8566_T|C, 8569_C|T, 8574_A|G, 8584_A|G, 8587_T|C, 8590_G|A, 8593_G|A, 8600_G|A,
8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8614_T|C, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8734_T|C, 8743_G|A, 8746_A|G, 8749_T|C,
8755_G|A, 8764_A|G, 8773_C|T, 8788_C|T, 8792_C|T, 8815_AC|GT, 8821_C|T, 8830_A|G, 8833_A|G, 8836_T|C, 8839_T|A, 8848_C|T, 8851_A|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8929_G|A,
8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8989_T|C, 9009_9010, 9017_.|AA, 9022_G|A, 9037_G|A, 9040_A|G, 9043_A|G, 9052_C|T, 9061_A|C, 9067_T|C,
9082_G|C, 9085_G|A, 9100_G|A, 9112_C|T, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9173_T|C, 9181_C|T, 9187_A|T, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A,
9217_T|G, 9229_C|T, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9280_T|G, 9295_GA|AG, 9298_C|T, 9313_C|T, 9319_T|C, 9324_AA|GG, 9328_A|G, 9331_G|A, 9334_A|G, 9336_AA|TG, 9340_A|T,
9343_G|A, 9361_G|A, 9364_C|T, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9454_A|G, 9460_T|C, 9463_T|C, 9466_TC|CT, 9472_C|T, 9485_T|C, 9490_A|G,
9497_T|C, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9566_C|T, 9573_GG|AA, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T,
9601_A|C, 9604_T|C, 9607_C|T, 9610_A|G, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9691_C|T, 9703_C|A, 9709_TA|GC, 9745_G|A, 9749_A|G, 9754_T|C, 9766_G|A, 9769_C|T,
9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_G|A, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9865_G|A, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C,
9938_C|T, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|G, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10051_G|A, 10066_G|A, 10072_C|T, 10096_A|G,
10111_C|T, 10128_AG|GA, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A,
10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10294_C|T, 10297_A|G, 10309_C|T,
10315_T|C, 10336_A|G, 10338_TG|CC, 10348_T|C, 10351_C|T, 10355_A|G, 10361_AT|GG, 10364_10365, 10366_A|C, 10369_G|A, 10378_G|A, 10382_10389, 10392_10394, 10399_10402, 10404_10406, 10409_10418,
10421_10431, 10434_10436, 10439_10442, 10444_10445, 10450_10463, 10466_10470, 10475_A|T, 10520, 10522_G|C, 10524_G|A, 10533_A|G, 10535_T|G, 10549_C|A, 10553_A|G, 10555_AC|GT, 10558_A|G,
10562_T|C, 10568_C|T, 10605_A|C, 10607_C|T, 10635_G|A, 10639_C|T, 10647_C|T, 10658_.|C, 10659_AG|CA, 10662_C|T, 10681_CT|TC
Case 3 (A.1): MW158345.1
| Target: 835 samples | Number of changes: 1464 | |
| BC: A.1.NmC2 + A.1 + A.1.NmC2 | BC BR: 1427-1428, 1443-1444 | BC BR coord: 10360 - 10361, 10468 - 10469 |
| Direction L1: >> | Initial region span: 1-1427,1428-1443,1444-1464 | Gap history (edge excluded): 1427-1444 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 9.20e-75 | |
| Rec. model vs L1: 2.72e-141 | Rec. model vs L2: 3.06e-92 | |
| Flags: Model_2BP_Best | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1427 |
150.578078 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1443 |
3.123235 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
1428 |
-10.000000 |
-167.354496 |
398.708993 |
9.151172e-75 |
|
|
|
| A.1.NmC1 |
0 |
1428 |
-10.000000 |
-160.000000 |
384.000000 |
1.431241e-71 |
|
|
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1444 |
26.880177 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 80_A|G, 108_C|T, 118_C|A, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 245_G|A, 247_T|C, 260_A|G, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 319_GT|AC, 322_G|A, 327_A|G,
340_A|G, 346_A|G, 352_G|A, 355_T|A, 358_T|C, 361_A|G, 363_G|A, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 436_G|A, 439_T|C, 448_C|T, 451_A|G,
455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 556_G|T, 565_C|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 598_C|T,
604_C|T, 610_C|T, 613_A|C, 628_T|C, 631_C|T, 640_T|C, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 676_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C,
760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 811_T|C, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 877_A|G, 879_TG|CA, 883_G|A,
886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 937_T|A, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1036_T|C,
1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1138_G|A, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT,
1168_C|A, 1171_TC|CA, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1249_C|T, 1255_C|A, 1261_T|C, 1279_C|A, 1285_C|T, 1294_A|G,
1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1339_C|T, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1432_T|C, 1435_C|T, 1441_T|C,
1444_G|A, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1525_G|A, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1546_T|C, 1558_C|T, 1561_T|A,
1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1696_T|C, 1701_G|A, 1705_AC|GT,
1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1781_G|A, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G,
1807_T|G, 1810_A|G, 1813_T|C, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1900_C|T, 1915_C|A,
1926_TT|CA, 1930_G|A, 1936_G|A, 1942_A|G, 1946_T|C, 1951_A|G, 1957_C|A, 1963_C|T, 1969_T|C, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2023_T|C, 2029_T|C, 2032_C|T,
2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2086_T|C, 2089_A|G, 2101_T|C, 2104_C|A, 2110_G|A, 2112_G|C, 2116_A|G, 2125_TC|CT, 2128_C|G, 2146_A|G, 2149_G|A,
2152_A|C, 2164_A|G, 2188_A|G, 2193_TG|CA, 2197_A|G, 2215_A|G, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A,
2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_GC|AT, 2308_A|G, 2314_C|T, 2322_A|G, 2341_C|T, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2401_C|T, 2408_T|C, 2410_G|A,
2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2491_C|T, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2554_C|T,
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10444_10445, 10449_10454, 10457_CC|TT, 10460_C|T, 10463_T|A, 10466_A|G, 10475_A|T, 10520, 10522_G|C, 10524_G|A, 10533_A|G, 10535_T|A, 10549_C|A, 10553_A|G, 10555_AC|GT, 10558_A|G, 10562_T|C,
10605_A|C, 10607_C|T, 10612_G|T, 10635_G|A, 10639_C|T, 10647_C|T, 10658_.|C, 10659_AG|CA, 10662_C|T, 10681_CT|TC
Case 3 (A.1): MW158346.1
| Target: 835 samples | Number of changes: 1460 | |
| BC: A.1.NmC2 + A.1 + A.1.NmC2 | BC BR: 1425-1426, 1441-1442 | BC BR coord: 10360 - 10361, 10468 - 10469 |
| Direction L1: >> | Initial region span: 1-1425,1426-1441,1442-1460 | Gap history (edge excluded): 1425-1442 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 9.15e-75 | |
| Rec. model vs L1: 2.72e-141 | Rec. model vs L2: 1.34e-101 | |
| Flags: Model_2BP_Best | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1425 |
170.578078 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
19 |
-0.893774 |
-1217.933572 |
5629.867144 |
0.0 |
|
|
|
| |||||
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1441 |
3.123235 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
1426 |
-10.000000 |
-167.354496 |
398.708993 |
9.151172e-75 |
|
|
|
| A.1.NmC1 |
0 |
1426 |
-10.000000 |
-160.000000 |
384.000000 |
1.431241e-71 |
|
|
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1442 |
23.471782 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 80_A|G, 108_C|T, 118_C|A, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 319_GT|AC, 322_G|A, 327_A|G, 340_A|G,
346_A|G, 352_G|A, 355_T|A, 358_T|C, 361_A|G, 363_G|A, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 436_G|A, 439_T|C, 448_C|T, 451_A|G, 455_T|C,
467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 556_G|T, 565_C|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 598_C|T, 604_C|T,
610_C|T, 613_A|C, 628_T|C, 631_C|T, 640_T|C, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 676_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A,
763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 811_T|C, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 877_A|G, 879_TG|CA, 883_G|A,
886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 937_T|A, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1036_T|C,
1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1138_G|A, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT,
1168_C|A, 1171_TC|CA, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1249_C|T, 1255_C|A, 1261_T|C, 1279_C|A, 1285_C|T, 1294_A|G,
1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1339_C|T, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1432_T|C, 1435_C|T, 1441_T|C,
1444_G|A, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1525_G|A, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1546_T|C, 1558_C|T, 1561_T|A,
1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1696_T|C, 1701_G|A, 1705_AC|GT,
1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1781_G|A, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G,
1807_T|G, 1810_A|G, 1813_T|C, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1900_C|T, 1915_C|A,
1926_TT|CA, 1930_G|A, 1936_G|A, 1942_A|G, 1946_T|C, 1951_A|G, 1957_C|A, 1963_C|T, 1969_T|C, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2023_T|C, 2029_T|C, 2032_C|T,
2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2086_T|C, 2089_A|G, 2101_T|C, 2104_C|A, 2110_G|A, 2112_G|C, 2116_A|G, 2125_TC|CT, 2128_C|G, 2146_A|G, 2149_G|A,
2152_A|C, 2164_A|G, 2188_A|G, 2193_TG|CA, 2197_A|G, 2215_A|G, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A,
2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_GC|AT, 2308_A|G, 2314_C|T, 2322_A|G, 2341_C|T, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2401_C|T, 2408_T|C, 2410_G|A,
2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2491_C|T, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2554_C|T,
2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2602_T|C, 2605_A|G, 2611_G|A, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2650_G|A, 2686_TT|CC, 2695_A|G,
2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2740_T|C, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T,
2782_T|C, 2785_G|A, 2788_G|A, 2794_T|C, 2809_T|C, 2812_G|A, 2827_C|T, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|T,
2950_C|A, 2962_C|T, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A,
3091_C|A, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C,
3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G,
3334_G|T, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3446_C|T, 3448_C|T, 3454_A|G, 3460_G|A,
3466_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G,
3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3632_C|T, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G,
3672_C|T, 3679_T|G, 3682_G|T, 3691_T|C, 3694_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3814_T|C, 3826_A|T,
3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|A, 3898_T|C, 3901_C|T, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G,
3971_T|C, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4036_A|C, 4039_G|T, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C,
4099_C|T, 4105_C|G, 4117_G|A, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4142_C|T, 4150_A|C, 4153_TC|CT, 4165_C|A, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT,
4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4270_T|C, 4273_GA|AG, 4289_C|A, 4301_C|T, 4306_T|C, 4309_C|T, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|A, 4360_A|T,
4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4409_G|A, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4480_C|T, 4483_GC|AT, 4489_C|T, 4495_T|C,
4498_G|A, 4504_CC|TA, 4510_T|C, 4519_T|A, 4522_TC|CT, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4576_G|A, 4583_T|C, 4585_G|T, 4591_T|C,
4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4654_C|T, 4663_C|A, 4667_T|C, 4669_G|A, 4672_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C,
4720_A|G, 4729_T|C, 4735_AA|TC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4756_G|A, 4759_T|C, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T,
4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4885_A|G, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T,
4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4975_T|C, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T,
5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T,
5200_A|C, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5269_T|C, 5284_G|A, 5287_T|C, 5297_C|T, 5299_G|A, 5302_C|T, 5305_G|C,
5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5359_T|C, 5362_C|T, 5368_C|T, 5374_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5393_T|C, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C,
5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5494_A|G, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A,
5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5653_G|A, 5662_A|C, 5668_C|T, 5683_A|G, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A,
5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_AT|CC, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T,
5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5956_G|A, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|A, 6034_C|T, 6037_C|T, 6043_C|T,
6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6160_G|A, 6174_AA|GG, 6182_A|C, 6187_A|G,
6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6241_T|C, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C,
6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C,
6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6514_T|C, 6517_C|T, 6523_T|C, 6527_T|C, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C,
6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6661_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6682_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA,
6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6818_T|A, 6823_C|T, 6826_A|G, 6832_C|T, 6835_A|G, 6841_A|T, 6844_C|T, 6847_C|T, 6850_T|C, 6869_G|A, 6874_A|T,
6876_CG|TA, 6889_C|T, 6892_GC|AT, 6898_C|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6956_G|T, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6979_TC|CT,
6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7042_A|T, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|A, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT,
7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7156_T|C, 7171_G|T, 7174_G|A, 7180_C|T, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T, 7247_T|A, 7255_T|C, 7258_A|G, 7261_T|C,
7267_C|T, 7288_T|G, 7294_G|A, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7354_C|T, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G,
7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7463_T|C, 7480_CC|GT, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT,
7597_A|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_T|C, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7738_G|A,
7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7768_G|A, 7771_C|T, 7780_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A,
7864_G|A, 7869_T|C, 7874_C|T, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7906_C|T, 7915_G|A, 7918_A|G, 7920_AG|GA, 7936_C|T, 7939_A|G, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C,
7969_G|A, 7972_A|G, 7996_A|G, 8011_C|T, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8053_A|G, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|TC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C,
8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8154_CT|GC, 8161_G|C, 8167_C|A, 8169_A|G, 8188_A|G, 8209_T|G, 8212_C|T, 8215_G|A, 8218_A|G, 8221_G|A, 8224_A|G, 8245_C|T,
8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8324_A|G, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T,
8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG,
8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|C, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8536_C|T, 8545_C|T, 8551_C|T, 8554_C|T, 8557_T|C, 8560_C|T, 8566_T|C,
8574_A|G, 8584_A|G, 8587_T|C, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8614_T|C, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A,
8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8815_AC|GT, 8821_C|T, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T,
8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8929_G|A, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 9009_9010, 9017_.|AA, 9022_G|A, 9037_G|A, 9040_A|G,
9061_A|C, 9067_T|C, 9082_G|T, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C,
9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9289_A|G, 9295_G|A, 9319_T|C, 9324_AA|GG, 9328_A|G, 9331_G|A, 9334_A|G, 9336_AA|TG, 9340_A|T,
9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9454_A|G, 9463_T|C, 9466_TC|CT, 9472_C|T, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C,
9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|TA, 9562_A|G, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C,
9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9745_G|A, 9749_A|G, 9754_T|C, 9775_T|C, 9787_C|T, 9796_A|G, 9799_G|A,
9817_G|A, 9823_G|A, 9835_A|G, 9838_A|C, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9862_A|G, 9865_G|A, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G,
9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10132_AA|GG, 10141_AA|GG,
10144_A|G, 10148_A|C, 10153_TG|CA, 10159_T|C, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G,
10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10294_C|T, 10297_A|G, 10309_C|T, 10315_T|C, 10330_C|T, 10336_A|G, 10338_TG|CC, 10348_T|C,
10351_C|T, 10355_A|G, 10361_10369, 10371_10372, 10374_10381, 10383_10387, 10391_10397, 10401_10412, 10419_10421, 10424_10427, 10430_10437, 10439_10441, 10444_10445, 10449_10454, 10457_CC|TT,
10460_C|T, 10463_T|A, 10466_A|G, 10475_A|T, 10520, 10522_G|C, 10524_G|A, 10533_A|G, 10535_T|A, 10549_C|A, 10553_A|G, 10555_AC|GT, 10558_A|G, 10562_T|C, 10605_ACC|CTT, 10635_G|A, 10639_C|T,
10647_C|T, 10653_.|G, 10657_AAG|CCA, 10662_C|T, 10681_CT|TC
Case 3 (A.1): MW158359.1
| Target: 835 samples | Number of changes: 1480 | |
| BC: A.1 + A.1 | BC BR: 1458-1459 | BC BR coord: 10443 - 10444 |
| Direction L1: >> | Initial region span: 1-1437,1467-1480 | Gap history (edge excluded): 1437-1467 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 5.32e-12 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1437 |
210.12314 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1467 |
1.281111 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 80_A|G, 117_AC|TA, 130_T|C, 166_A|T, 171_G|A, 178_T|C, 226_C|T, 247_T|C, 262_C|T, 280_CA|TG, 284_T|C, 294_AA|GG, 301_C|T, 304_A|T, 307_C|T, 310_CC|TT, 313_A|G, 318_G|A, 320_T|C, 327_AA|GG,
340_A|G, 346_A|G, 349_C|A, 352_G|A, 361_A|G, 363_G|A, 367_A|G, 376_A|G, 385_C|G, 389_T|C, 400_A|C, 409_A|G, 418_C|T, 421_T|A, 430_T|A, 433_T|C, 442_G|T, 448_C|T, 451_A|G, 454_TT|CC, 457_G|A,
467_T|C, 475_G|T, 496_G|T, 499_A|G, 501_A|G, 514_CC|TT, 517_A|G, 523_G|T, 529_T|C, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 594_A|G, 596_T|A, 598_C|T, 604_C|T, 607_A|G, 610_C|T,
613_A|C, 628_T|C, 634_T|C, 637_CA|TG, 649_G|A, 655_A|T, 664_T|A, 670_C|T, 682_G|A, 691_C|T, 697_A|G, 700_C|T, 703_A|T, 709_T|G, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|T, 745_A|G,
754_T|C, 757_C|T, 760_G|A, 763_T|C, 766_G|A, 790_C|T, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 833_C|T, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 877_A|T, 883_G|A, 887_C|T, 889_GA|AG,
901_CC|TT, 904_T|A, 910_A|G, 931_C|T, 940_CC|TT, 943_A|G, 946_G|A, 949_C|T, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 985_T|A, 991_T|A, 997_C|T, 1036_T|C, 1042_T|C, 1045_C|T, 1051_G|A, 1054_A|G,
1066_C|T, 1072_T|G, 1090_T|C, 1094_T|C, 1102_C|A, 1106_C|T, 1108_A|G, 1111_G|A, 1117_A|T, 1127_A|G, 1138_G|A, 1140_TG|CA, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_T|C, 1181_A|G, 1183_T|A,
1189_C|T, 1204_T|C, 1207_A|T, 1210_G|A, 1216_CC|TT, 1219_A|G, 1222_T|C, 1228_G|A, 1234_A|G, 1237_G|A, 1240_C|T, 1243_T|C, 1246_G|C, 1252_G|A, 1255_C|G, 1258_T|C, 1261_T|C, 1279_C|G, 1285_C|T,
1294_A|G, 1300_G|A, 1306_G|A, 1327_A|G, 1330_C|T, 1333_T|C, 1342_A|G, 1351_TT|CC, 1366_T|C, 1378_T|C, 1390_C|T, 1393_A|G, 1400_T|C, 1408_A|T, 1411_G|A, 1423_A|G, 1426_T|C, 1433_A|G, 1435_C|T,
1447_T|C, 1453_G|A, 1471_C|T, 1474_C|T, 1480_A|G, 1482_TC|CT, 1486_G|A, 1489_C|T, 1491_T|C, 1495_G|A, 1501_A|G, 1504_A|G, 1507_T|C, 1511_C|T, 1516_A|G, 1522_G|A, 1525_G|A, 1528_A|G, 1534_G|A,
1544_G|A, 1546_T|C, 1552_T|C, 1561_T|A, 1570_A|G, 1572_C|G, 1585_A|T, 1591_C|T, 1603_C|T, 1609_C|T, 1618_G|A, 1621_A|T, 1642_G|T, 1660_T|C, 1669_C|G, 1675_T|C, 1678_A|G, 1684_G|A, 1690_C|T,
1693_C|A, 1701_G|A, 1705_AC|GT, 1712_C|T, 1720_C|T, 1723_G|A, 1732_C|T, 1738_A|G, 1747_T|C, 1753_C|T, 1760_A|C, 1765_T|C, 1771_G|A, 1782_A|G, 1785_AC|GT, 1792_T|G, 1798_A|G, 1801_A|G,
1807_T|G, 1810_A|G, 1813_T|C, 1816_T|C, 1819_T|A, 1822_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1876_T|C, 1887_T|C, 1894_C|T, 1900_C|T, 1912_T|A, 1915_C|A, 1926_TT|CC, 1930_G|A, 1946_T|C, 1978_A|G,
1993_T|C, 2000_G|T, 2003_A|G, 2008_T|C, 2017_T|C, 2023_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2047_C|T, 2053_T|A, 2059_A|G, 2063_C|T, 2080_A|C, 2083_T|C, 2086_T|C, 2089_A|G, 2104_C|A,
2112_G|C, 2116_A|G, 2119_T|C, 2125_T|A, 2128_C|G, 2131_T|C, 2146_A|G, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2191_C|T, 2193_T|C, 2197_A|G, 2201_C|T, 2215_A|G, 2218_CA|TG, 2221_C|T, 2224_C|T,
2230_T|C, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2266_G|A, 2275_T|A, 2278_T|C, 2280_C|T, 2290_C|T, 2302_G|A, 2305_GC|AT, 2308_A|G, 2322_A|G, 2350_G|A, 2353_A|C, 2376_CA|TG, 2380_A|G,
2407_CT|TC, 2413_A|T, 2419_G|C, 2432_T|C, 2446_T|G, 2455_T|C, 2464_C|T, 2467_C|A, 2488_G|A, 2494_G|A, 2497_C|T, 2500_A|G, 2503_T|C, 2506_TA|AG, 2515_A|T, 2518_T|C, 2521_A|G, 2524_C|T,
2527_T|A, 2533_C|T, 2548_C|T, 2566_T|C, 2569_T|G, 2581_A|T, 2593_A|G, 2599_T|C, 2605_A|G, 2621_C|T, 2626_T|C, 2632_T|C, 2638_C|T, 2641_T|G, 2644_G|A, 2650_G|A, 2659_A|G, 2662_C|T, 2665_G|A,
2668_A|G, 2686_TT|CC, 2695_A|G, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_T|C, 2734_G|A, 2737_TG|CA, 2740_T|C, 2755_T|A, 2761_A|T, 2776_G|T,
2782_TC|CT, 2788_G|A, 2794_T|C, 2803_T|C, 2812_G|A, 2814_A|G, 2824_C|T, 2827_C|T, 2833_G|A, 2836_G|A, 2860_T|C, 2863_A|G, 2878_A|G, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A,
2923_G|A, 2926_T|C, 2947_A|T, 2950_C|A, 2962_C|T, 2968_C|T, 2980_C|A, 2983_A|G, 3007_T|G, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|A, 3040_C|G, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A,
3091_C|A, 3098_T|C, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3142_T|C, 3169_TG|CA, 3172_A|C, 3187_A|G, 3193_C|T, 3205_T|G, 3211_T|C, 3217_T|C, 3223_C|T, 3226_T|A, 3238_T|C,
3243_CG|TA, 3247_C|T, 3250_A|G, 3265_A|G, 3271_A|G, 3289_T|C, 3292_C|T, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|TGG, 3331_A|G, 3334_G|T, 3343_A|T, 3349_A|G,
3358_G|C, 3361_T|C, 3364_C|T, 3370_AG|GA, 3373_T|C, 3394_C|A, 3397_C|A, 3400_C|T, 3412_T|A, 3421_C|T, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3457_T|C, 3460_G|A, 3469_A|C, 3472_G|A,
3480_G|A, 3484_T|C, 3490_G|T, 3496_C|A, 3502_T|G, 3514_AA|GG, 3517_A|C, 3523_TG|AA, 3535_T|G, 3569_C|T, 3571_A|G, 3573_G|A, 3577_A|G, 3583_G|A, 3589_A|C, 3598_GT|AC, 3610_A|C, 3620_T|C,
3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|C, 3649_T|C, 3652_CC|GT, 3655_T|A, 3667_A|G, 3670_C|A, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3715_A|G, 3718_C|T,
3727_T|C, 3733_GT|TC, 3739_T|C, 3745_C|T, 3748_T|C, 3751_A|G, 3757_A|G, 3760_A|G, 3763_G|A, 3772_C|T, 3778_T|C, 3782_C|T, 3784_C|G, 3790_C|A, 3793_A|G, 3802_T|C, 3805_G|A, 3820_G|A, 3826_A|G,
3832_A|T, 3847_T|A, 3856_T|C, 3860_G|A, 3868_C|A, 3871_C|G, 3883_T|C, 3886_A|G, 3895_T|G, 3898_T|C, 3901_C|T, 3908_C|T, 3928_T|C, 3931_T|C, 3934_G|A, 3939_C|T, 3945_ATA|GCG, 3949_C|T,
3959_C|T, 3961_C|G, 3967_T|G, 3982_C|G, 3985_T|A, 4000_A|G, 4006_CG|AA, 4009_A|G, 4013_T|C, 4018_T|C, 4021_TG|CA, 4030_T|C, 4036_A|C, 4045_T|C, 4054, 4055_T|C, 4059_.|G, 4063_C|T, 4081_T|C,
4087_T|C, 4093_G|A, 4096_C|T, 4105_C|A, 4108_A|T, 4120_C|T, 4129_A|G, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4174_G|A, 4198_G|A, 4204_C|T, 4210_A|G, 4219_A|T, 4229_C|T, 4234_A|G,
4240_G|A, 4246_T|C, 4258_G|A, 4267_T|G, 4270_T|C, 4273_GA|AG, 4289_C|A, 4292_C|T, 4306_T|C, 4320_GG|AA, 4327_T|C, 4330_G|A, 4333_A|C, 4336_G|A, 4341_A|G, 4345_GC|AT, 4348_T|A, 4351_T|A,
4360_A|C, 4375_G|C, 4381_C|T, 4384_C|T, 4387_G|A, 4393_C|T, 4411_A|T, 4429_G|A, 4435_GC|AT, 4438_G|A, 4441_T|C, 4447_A|G, 4453_A|G, 4456_G|T, 4465_C|T, 4469_G|A, 4474_G|C, 4483_G|A, 4489_C|T,
4495_T|C, 4498_G|A, 4504_CC|TA, 4519_T|A, 4522_TC|CA, 4531_C|T, 4534_T|G, 4540_G|T, 4547_T|C, 4549_T|C, 4555_.|A, 4557_G|A, 4562, 4576_G|A, 4579_T|C, 4583_T|C, 4585_G|C, 4594_T|C, 4598_A|G,
4600_T|A, 4605_AG|CA, 4609_CA|TG, 4612_C|T, 4618_A|G, 4628_C|T, 4639_G|A, 4645_T|C, 4651_A|T, 4660_A|G, 4663_C|T, 4666_CT|TC, 4669_G|A, 4672_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4711_G|C,
4720_A|G, 4732_C|G, 4741_A|T, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4769_T|C, 4771_GA|AG, 4778_T|A, 4780_T|C, 4786_T|C, 4789_A|T, 4792_A|C, 4798_A|G, 4813_T|C, 4829_T|C, 4852_G|A,
4855_A|G, 4870_C|T, 4873_G|A, 4876_T|C, 4878_TT|CC, 4882_A|C, 4891_C|T, 4897_C|T, 4900_C|T, 4903_C|T, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4939_G|C, 4948_C|T, 4954_T|G,
4957_C|G, 4960_T|C, 4969_T|C, 4975_T|C, 4978_C|T, 4981_T|C, 4984_A|C, 4987_A|C, 4993_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5014_G|A, 5020_T|A, 5024_C|T, 5026_G|A, 5029_C|T, 5038_C|A, 5041_C|T,
5047_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5088_TG|CA, 5092_G|A, 5098_A|G, 5101_A|G, 5107_G|A, 5113_C|T, 5116_A|G, 5119_G|A, 5140_A|G, 5152_TG|CA, 5155_C|T, 5161_T|C, 5164_T|C, 5173_A|G,
5176_T|C, 5179_G|A, 5185_A|T, 5190_.|C, 5195_C|T, 5200, 5206_CT|TC, 5212_C|T, 5215_G|A, 5230_CT|GC, 5239_T|G, 5245_G|T, 5251_C|T, 5257_C|T, 5260_G|A, 5269_T|C, 5272_T|C, 5287_T|C, 5299_G|A,
5302_C|T, 5308_A|G, 5311_C|T, 5323_T|C, 5326_T|C, 5332_T|G, 5335_C|T, 5344_G|A, 5346_GA|AG, 5368_C|T, 5374_C|T, 5380_A|G, 5383_T|A, 5398_A|G, 5401_A|G, 5407_G|A, 5410_T|G, 5413_T|A, 5416_C|T,
5428_C|T, 5431_T|C, 5440_A|G, 5443_C|T, 5452_G|A, 5458_A|G, 5461_T|C, 5470_C|A, 5473_T|C, 5479_T|C, 5488_G|A, 5491_C|T, 5500_G|A, 5503_A|G, 5530_A|T, 5539_G|T, 5542_T|A, 5545_G|A, 5569_A|G,
5575_T|G, 5584_A|G, 5593_A|G, 5596_G|A, 5602_A|T, 5605_C|T, 5623_A|G, 5626_G|T, 5639_C|T, 5641_A|G, 5662_A|C, 5683_A|G, 5689_A|G, 5695_C|T, 5701_T|A, 5707_TT|CC, 5713_T|C, 5716_G|A, 5722_A|G,
5737_C|G, 5743_C|T, 5749_A|G, 5758_G|A, 5764_A|G, 5773_G|T, 5776_A|T, 5779_G|A, 5797_T|C, 5800_A|C, 5836_T|C, 5839_C|T, 5846_C|A, 5857_T|C, 5875_G|A, 5893_A|G, 5914_A|G, 5917_G|A, 5926_T|G,
5929_C|T, 5932_C|A, 5935_A|T, 5938_C|T, 5941_T|C, 5947_T|C, 5953_G|A, 5956_G|A, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|A, 5980_C|T, 5983_A|G, 5989_A|G, 5992_C|T, 5998_C|T, 6001_C|T, 6004_T|C,
6013_T|A, 6023_A|G, 6025_T|C, 6034_C|T, 6037_C|T, 6047_T|C, 6052_G|A, 6067_G|A, 6100_C|T, 6103_A|G, 6113_G|A, 6115_T|A, 6118_A|G, 6121_A|G, 6124_T|A, 6127_A|G, 6142_T|A, 6145_T|C, 6154_A|G,
6157_G|A, 6160_G|A, 6169_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6229_A|G, 6244_TT|AC, 6250_G|A, 6259_T|C, 6262_T|G, 6271_T|C, 6277_A|G, 6280_C|T, 6283_T|A,
6310_C|T, 6316_A|G, 6322_G|A, 6334_T|C, 6346_A|G, 6351_A|G, 6361_C|A, 6379_A|G, 6385_G|T, 6388_A|G, 6391_T|C, 6400_T|C, 6403_G|T, 6406_GT|TG, 6409_T|C, 6415_T|C, 6418_T|A, 6427_T|C, 6430_A|G,
6433_T|C, 6442_A|G, 6445_T|G, 6448_T|G, 6451_A|G, 6457_A|G, 6463_G|A, 6478_T|G, 6481_T|C, 6490_T|C, 6493_A|G, 6508_A|G, 6514_T|C, 6517_C|T, 6523_T|C, 6530_C|T, 6532_CC|GA, 6535_C|T, 6547_C|T,
6550_T|C, 6569_C|T, 6571_A|G, 6595_A|G, 6611_A|G, 6613_A|G, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6664_A|G, 6667_C|A, 6682_T|C, 6688_G|A, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6730_A|G,
6733_C|T, 6757_TG|CA, 6766_C|A, 6772_C|T, 6790_T|G, 6794_A|G, 6796_C|T, 6799_C|A, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6829_C|T, 6835_A|G, 6841_A|T, 6844_C|T,
6850_T|C, 6859_CC|TT, 6866_C|T, 6874_A|T, 6876_C|T, 6883_A|T, 6889_C|T, 6892_G|A, 6895_A|G, 6902_C|T, 6904_G|A, 6907_G|A, 6910_A|G, 6916_A|G, 6919_G|A, 6925_C|T, 6934_G|A, 6940_CT|TG,
6943_A|G, 6952_T|C, 6955_TG|CA, 6959_T|G, 6969_G|A, 6986_C|T, 6988_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|A, 7036_C|T, 7039_T|C, 7054_C|T, 7063_A|G, 7066_C|T, 7069_A|G, 7078_C|T,
7085_C|T, 7096_A|T, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|A, 7138_A|C, 7141_A|G, 7156_T|C, 7162_G|T, 7171_G|C, 7177_GG|AA, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T, 7243_C|T,
7247_T|A, 7249_T|C, 7255_T|C, 7261_T|C, 7270_A|G, 7279_G|A, 7282_A|C, 7286_C|T, 7288_T|G, 7297_A|G, 7300_G|A, 7306_C|T, 7312_C|T, 7318_CG|TA, 7321_G|A, 7324_C|T, 7327_T|A, 7339_G|A, 7363_A|G,
7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7408_T|C, 7412_C|T, 7414_T|G, 7420_T|C, 7426_CC|TT, 7429_A|G, 7432_T|C, 7450_A|G, 7453_G|C, 7456_C|T, 7463_T|C, 7465_G|A,
7468_T|C, 7480_CC|GT, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7504_G|A, 7516_A|G, 7528_T|C, 7531_T|G, 7540_A|G, 7543_C|T, 7552_C|G, 7567_C|T, 7571_A|C, 7573_G|A, 7580_C|T, 7597_A|T,
7612_A|C, 7630_A|G, 7634_C|A, 7642_C|A, 7666_A|G, 7669_C|T, 7675_G|A, 7681_A|G, 7684_G|A, 7687_T|C, 7691_T|C, 7693_G|A, 7701_G|A, 7712_T|C, 7714_G|T, 7717_T|C, 7726_C|A, 7729_C|T, 7732_T|C,
7744_T|C, 7750_T|G, 7753_G|A, 7765_TT|CC, 7771_C|T, 7786_C|T, 7789_C|T, 7798_G|T, 7804_C|A, 7807_G|A, 7819_GT|AC, 7822_A|G, 7825_G|A, 7837_G|A, 7855_G|A, 7861_T|C, 7869_T|C, 7873_CC|TT,
7876_G|A, 7879_G|A, 7882_T|C, 7885_C|A, 7888_C|T, 7891_A|T, 7894_C|T, 7900_T|C, 7906_C|T, 7915_G|A, 7918_A|G, 7921_G|A, 7924_A|G, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7969_G|A,
7990_T|C, 8011_C|T, 8014_C|T, 8020_C|T, 8023_A|G, 8044_A|G, 8053_A|G, 8065_T|C, 8071_T|C, 8074_C|T, 8086_A|G, 8089_AT|TC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8120_G|A, 8123_A|C, 8134_T|C,
8137_T|C, 8140_A|T, 8143_A|G, 8150_.|T, 8155, 8158_T|C, 8161_G|T, 8167_C|G, 8169_A|G, 8173_C|T, 8186_T|C, 8188_A|G, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8224_A|G, 8233_A|G, 8245_C|T,
8248_A|G, 8251_A|G, 8254_G|C, 8266_T|C, 8269_C|T, 8275_G|A, 8278_T|C, 8281_C|T, 8284_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8320_TG|CA, 8329_T|C, 8338_C|T, 8341_A|G, 8354_C|T, 8362_G|A, 8365_A|G,
8371_G|A, 8374_T|C, 8380_T|A, 8383_A|C, 8392_C|T, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8440_A|G, 8446_G|A, 8449_A|G, 8452_C|A, 8460_AA|GG, 8463_AG|CA, 8470_A|C, 8476_A|G, 8485_G|A,
8488_G|A, 8500_G|A, 8505_TGA|CAG, 8510_T|A, 8518_TT|CC, 8536_C|T, 8551_C|T, 8554_C|T, 8557_T|C, 8567_G|A, 8574_A|G, 8581_A|G, 8584_A|G, 8587_T|C, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T,
8608_T|A, 8611_T|G, 8617_A|G, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|T, 8671_T|A, 8680_C|T, 8683_T|C, 8692_G|A, 8704_T|C, 8707_A|G, 8725_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A,
8758_C|T, 8764_A|G, 8773_C|T, 8782_G|A, 8785_C|T, 8792_C|T, 8797_C|T, 8800_A|G, 8808_AC|GT, 8815_A|G, 8824_A|G, 8830_A|G, 8833_A|G, 8836_T|C, 8839_T|A, 8851_A|T, 8854_T|C, 8866_T|C, 8869_A|G,
8874_A|T, 8923_C|T, 8926_A|G, 8929_G|A, 8939_C|T, 8954_A|C, 8957_AA|CG, 8962_G|A, 8968_A|G, 8971_A|G, 8974_C|T, 8980_T|C, 9019_G|A, 9022_G|A, 9034_T|C, 9037_G|A, 9040_A|G, 9043_A|G, 9046_G|A,
9052_C|T, 9061_A|C, 9067_T|C, 9074_C|T, 9082_G|C, 9085_G|A, 9091_T|A, 9100_G|A, 9106_G|T, 9113_C|T, 9115_G|A, 9127_T|C, 9133_T|A, 9136_C|T, 9142_A|G, 9151_A|G, 9160_G|T, 9166_C|T, 9169_T|C,
9172_CT|TC, 9175_A|G, 9179_T|C, 9181_C|T, 9187_A|C, 9190_T|C, 9201_A|G, 9212_A|C, 9214_G|A, 9217_T|A, 9229_C|T, 9232_C|T, 9235_G|A, 9244_C|A, 9259_G|A, 9274_A|G, 9277_CC|TT, 9280_T|G,
9313_C|T, 9322_C|T, 9325_A|G, 9328_A|G, 9336_AA|TG, 9343_G|A, 9349_A|G, 9361_G|A, 9367_A|G, 9379_GT|CC, 9382_G|A, 9391_C|T, 9397_A|T, 9406_C|A, 9416_G|A, 9427_A|G, 9430_A|G, 9439_A|G,
9445_C|T, 9467_C|T, 9478_C|A, 9484_CT|TC, 9490_A|G, 9493_C|T, 9505_A|G, 9527_A|G, 9529_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|TG, 9562_A|G, 9566_C|T,
9571_C|A, 9574_G|A, 9577_G|C, 9590_A|G, 9598_C|T, 9601_A|C, 9607_C|T, 9610_AC|GT, 9614_A|C, 9625_G|A, 9637_C|T, 9640_C|T, 9646_G|C, 9652_G|C, 9658_C|T, 9670_C|T, 9674_C|T, 9679_C|T, 9685_C|T,
9709_TA|GC, 9712_A|C, 9745_G|A, 9754_T|C, 9769_C|G, 9790_T|C, 9793_A|G, 9796_A|G, 9799_G|A, 9817_G|A, 9832_C|T, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_C|A, 9853_T|C, 9856_G|A, 9859_A|G,
9865_G|A, 9868_G|T, 9880_C|T, 9898_A|G, 9904_T|A, 9910_C|A, 9916_A|G, 9919_C|T, 9938_C|T, 9946_T|C, 9955_AA|GC, 9961_C|T, 9968_C|T, 9970_A|G, 9977_T|C, 9985_T|C, 9988_C|T, 9991_A|T,
10003_C|A, 10006_A|G, 10027_A|C, 10036_GA|TG, 10048_A|G, 10066_G|A, 10096_A|G, 10103_AC|GT, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10154_G|A, 10159_T|C,
10162_T|C, 10174_A|G, 10177_A|G, 10180_C|T, 10186_G|T, 10189_C|T, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10234_C|T, 10237_C|T, 10240_TT|CC, 10243_A|G, 10246_C|G, 10249_C|A,
10252_T|C, 10255_T|C, 10261_A|G, 10264_GC|AT, 10274_C|A, 10276_G|A, 10294_C|T, 10297_A|G, 10309_C|T, 10312_G|A, 10315_T|C, 10336_A|G, 10338_TG|CC, 10342_T|C, 10348_T|C, 10355_A|G, 10358_A|G,
10362, 10365_10372, 10374_AA|TG, 10377_C|A, 10381_10382, 10385, 10391_10397, 10404_10413, 10418_10422, 10425_C|T, 10427_10429, 10434_A|T, 10436_10439, 10442_C|A, 10446_10458, 10460,
10464_10475, 10522, 10524_G|A, 10526_C|T, 10533_A|G, 10535_T|A, 10547_A|G, 10554_CAC|TGT, 10558_A|G, 10568_C|T, 10605_ACC|CTT, 10620_A|T, 10635_G|A, 10639_C|T, 10647_C|T, 10658_.|C,
10659_AG|CA, 10675_A|G, 10681_CT|TC, 10742_T|C
Case 3 (A.1): MW158361.1
| Target: 835 samples | Number of changes: 1490 | |
| BC: A.1 + A.1.NmC2 | BC BR: 1476-1477 | BC BR coord: 10527 - 10528 |
| Direction L1: >> | Initial region span: 1-1445,1485-1490 | Gap history (edge excluded): 1445-1485 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.94e+15 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1445 |
185.198001 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1485 |
6.21945 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 80_A|G, 117_AC|TA, 130_T|C, 166_A|T, 171_G|A, 178_T|C, 221_G|A, 226_C|T, 247_T|C, 262_C|T, 280_CA|TG, 284_T|C, 294_AA|GG, 301_C|T, 304_A|T, 307_C|T, 310_CC|TT, 313_A|G, 318_G|A, 320_T|C,
327_AA|GG, 346_A|G, 349_C|A, 352_G|A, 361_A|G, 363_G|A, 367_A|G, 385_C|G, 400_AT|TC, 409_A|G, 421_T|A, 427_T|C, 430_T|A, 434_C|T, 442_G|T, 448_C|T, 451_A|G, 454_TT|CC, 467_T|C, 475_G|T,
488_T|C, 496_G|C, 499_A|G, 501_A|G, 514_CC|TT, 517_A|G, 521_G|A, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 568_C|T, 577_A|C, 584_T|C, 589_A|G, 596_T|A, 598_C|T, 604_C|T, 607_A|G, 610_C|T,
613_A|T, 619_A|G, 628_T|C, 634_T|C, 637_C|T, 649_G|A, 655_A|T, 664_T|A, 670_C|T, 682_G|A, 691_C|T, 697_A|G, 700_C|T, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|T,
754_T|C, 757_C|T, 760_G|A, 763_T|C, 766_G|A, 790_C|T, 796_A|G, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 833_C|T, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|A, 883_G|A, 886, 890_G|T,
891_.|G, 892_C|T, 898_C|T, 901_CC|TT, 904_T|A, 910_A|G, 931_C|T, 937_T|C, 941_C|T, 943_A|G, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 985_T|A, 991_T|A, 1042_T|C, 1045_CC|TT, 1051_G|A, 1054_A|G,
1066_C|T, 1069_T|C, 1072_T|G, 1090_T|C, 1094_T|C, 1102_C|A, 1108_A|G, 1111_G|A, 1117_A|T, 1123_T|C, 1127_A|G, 1138_G|A, 1140_TG|CA, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_T|C,
1181_A|G, 1183_T|C, 1189_C|T, 1204_T|C, 1207_A|T, 1210_G|A, 1216_C|T, 1219_A|G, 1222_T|C, 1237_G|A, 1240_C|T, 1243_T|C, 1246_G|C, 1249_C|T, 1252_G|A, 1255_C|A, 1261_T|C, 1267_T|C, 1279_C|G,
1285_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1327_A|G, 1342_A|G, 1351_TT|CC, 1366_T|C, 1372_C|T, 1378_T|C, 1387_C|T, 1393_A|G, 1400_T|C, 1408_A|T, 1411_G|A, 1423_A|G, 1426_T|C, 1432_TA|CG,
1435_C|T, 1447_T|C, 1453_G|A, 1474_C|T, 1480_A|G, 1482_TC|CT, 1486_G|A, 1491_T|C, 1495_G|A, 1501_A|G, 1504_A|G, 1507_T|C, 1516_A|G, 1522_G|A, 1525_G|A, 1528_A|G, 1531_T|C, 1534_G|A,
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9133_T|A, 9142_A|G, 9151_A|G, 9160_G|T, 9163_A|G, 9166_C|T, 9169_T|C, 9172_CT|TC, 9175_A|G, 9179_T|C, 9187_A|C, 9190_T|C, 9201_A|G, 9208_T|A, 9212_A|T, 9214_G|A, 9217_T|A, 9229_C|T, 9232_C|T,
9235_G|A, 9244_C|A, 9259_G|A, 9274_A|G, 9277_C|T, 9280_T|G, 9301_G|A, 9307_C|T, 9313_C|T, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_A|G, 9335_CAA|TTG, 9340_A|T, 9361_G|A, 9367_A|G, 9379_G|C,
9382_G|A, 9391_C|T, 9397_A|T, 9406_C|A, 9418_C|T, 9424_T|C, 9427_A|G, 9439_A|G, 9454_A|G, 9467_C|T, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9505_A|G, 9514_A|G, 9527_A|G, 9529_A|G, 9532_T|C,
9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9566_C|T, 9571_C|A, 9573_GG|AA, 9577_G|T, 9590_A|G, 9598_C|T, 9601_A|C, 9607_C|T, 9610_AC|GT, 9637_C|T, 9646_G|T,
9652_G|C, 9658_C|T, 9664_C|T, 9670_C|T, 9679_C|T, 9685_C|T, 9709_TA|GC, 9712_A|C, 9745_G|A, 9754_T|C, 9769_C|G, 9775_T|C, 9778_C|T, 9790_T|C, 9796_A|G, 9799_G|A, 9817_G|A, 9820_T|C, 9835_A|G,
9838_A|T, 9841_G|A, 9844_C|T, 9850_C|A, 9859_A|G, 9865_G|A, 9868_G|T, 9880_C|T, 9892_C|T, 9898_A|G, 9901_A|G, 9904_T|A, 9910_C|A, 9916_A|G, 9919_C|T, 9922_T|C, 9928_C|T, 9938_C|T, 9946_T|C,
9955_A|G, 9958_G|A, 9961_C|T, 9970_A|G, 9977_T|C, 9985_T|C, 9991_A|T, 10003_C|A, 10006_A|G, 10018_A|G, 10024_C|T, 10027_A|C, 10030_A|G, 10036_GA|TG, 10051_G|A, 10066_G|A, 10096_A|G,
10103_AC|GT, 10117_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10159_T|C, 10162_T|C, 10174_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G,
10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10234_C|T, 10240_TT|CC, 10243_A|G, 10246_C|G, 10249_C|A, 10252_T|C, 10255_TA|CG, 10261_A|G, 10264_GC|AT, 10273_AC|GA, 10276_G|T,
10279_G|A, 10291_C|T, 10294_C|T, 10297_A|G, 10309_C|T, 10312_G|A, 10315_T|C, 10331_C|T, 10336_A|G, 10338_TG|CC, 10348_T|C, 10351_C|T, 10355_A|G, 10358_A|G, 10363, 10365_10369, 10371_10372,
10374, 10375_A|G, 10377_C|A, 10381_10382, 10385, 10391_10397, 10402_10410, 10414, 10418_10422, 10425_C|T, 10427_10429, 10434_10442, 10444_10445, 10450, 10451_C|T, 10455_10460, 10464_10475,
10522, 10524_G|A, 10526_C|T, 10533_A|G, 10535_T|A, 10549_C|A, 10554_CAC|TGT, 10558_A|G, 10562_T|C, 10605_ACC|CTT, 10620_A|C, 10635_G|A, 10639_C|T, 10647_C|T, 10658_.|C, 10659_AG|CA,
10681_C|T
Case 3 (A.1): ON022716.1
| Target: 835 samples | Number of changes: 1409 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1342-1343 | BC BR coord: 9798 - 9799 |
| Direction L1: >> | Initial region span: 1-1214,1344-1409 | Gap history (edge excluded): 1214-1344 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.92e-183 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1214 |
126.586032 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
32 |
3.704410 |
-416.610208 |
3671.220417 |
3.585207e-227 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1344 |
3.811378 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 436_G|A, 442_G|A, 448_CC|TT, 451_A|G, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C,
493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 598_C|T, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T,
664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_TT|CC, 784_G|A, 802_A|G,
823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C,
943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A,
1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|A, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG,
1507_T|C, 1516_A|G, 1525_G|A, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1546_T|C, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T,
1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1696_T|C, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C,
1762_G|A, 1765_T|C, 1771_G|A, 1781_G|A, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1813_TG|CA, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G,
1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C,
2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C,
2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2215_A|G, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG,
2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_C|T, 2353_A|C, 2356_T|C,
2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T,
2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2611_G|A, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A,
2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2773_T|A, 2776_G|T, 2782_TC|CT, 2788_G|A, 2791_T|C, 2794_T|C,
2809_T|C, 2812_G|A, 2827_C|T, 2833_G|A, 2836_G|A, 2854_C|T, 2863_A|G, 2878_A|G, 2881_C|T, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G,
2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T,
3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_AC|GT, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T,
3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G,
3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_GG|AA,
3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C,
3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3632_C|T, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G,
3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G,
3829_A|G, 3832_A|C, 3850_C|T, 3853_G|A, 3860_G|A, 3868_C|A, 3871_C|T, 3886_A|G, 3895_T|A, 3898_T|C, 3901_C|T, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3982_C|G,
3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4099_C|T,
4105_C|G, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT,
4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4267_T|A, 4273_GA|AG, 4276_T|C, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A,
4372_G|A, 4375_G|T, 4387_G|A, 4393_C|T, 4399_C|T, 4409_G|A, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C,
4498_G|A, 4504_CC|TA, 4519_T|A, 4522_TC|CT, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4600_T|A, 4606_G|A, 4612_C|T,
4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4654_C|T, 4663_C|A, 4667_T|C, 4669_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G,
4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4759_T|C, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|G, 4837_C|T, 4852_G|A,
4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4876_T|C, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4939_G|A,
4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T,
5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T,
5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5269_T|C, 5284_G|A, 5287_T|C, 5297_C|T, 5299_G|A, 5302_C|T,
5305_G|C, 5308_A|G, 5311_C|T, 5323_T|C, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C,
5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5512_T|C, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G,
5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A,
5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A,
5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|A, 6034_C|T,
6037_C|T, 6047_T|C, 6049_G|T, 6055_C|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A,
6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A,
6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_TA|CG, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G,
6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|A, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G,
6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA,
6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6835_A|G, 6841_A|T, 6844_C|T, 6847_C|T, 6850_T|C, 6869_G|A, 6874_A|T,
6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A,
7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C,
7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7177_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G,
7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7399_G|A, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T,
7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT,
7597_A|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A,
7738_G|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T,
7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7936_C|T, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C,
7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8048_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A,
8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8154_CT|GC, 8161_G|C, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A,
8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T,
8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8407_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T,
8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8536_C|T, 8545_C|T, 8551_C|T,
8554_C|T, 8560_C|T, 8566_T|C, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8614_T|C, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G,
8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8767_T|A, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8821_C|T, 8830_A|G, 8833_A|G,
8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8908_T|C, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C,
8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|T, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C,
9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9298_C|T, 9319_T|C, 9322_C|T,
9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9454_A|G, 9463_T|C, 9466_TC|CT,
9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9566_C|T, 9573_G|A, 9577_G|T,
9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9691_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A,
9733_G|A, 9745_G|A, 9749_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_G|A, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9862_A|G, 9865_G|A, 9880_C|T,
9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G,
10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G,
10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA,
10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): OR119828.1
| Target: 835 samples | Number of changes: 1448 | |
| BC: A.1.NmC2 + A.1 | BC BR: 12-13 | BC BR coord: 280 - 281 |
| Direction L1: >> | Initial region span: 1-10,1421-1448 | Gap history (edge excluded): 10-1421 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 1.70e-04 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
10 |
6.029594 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1421 |
0.974331 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 80_A|G, 108_C|T, 118_C|A, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 271_T|C, 280_CA|TG, 289_T|C, 295_A|G, 304_A|T, 307_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G,
346_A|G, 352_G|A, 358_T|C, 361_A|G, 363_G|A, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 446_T|C, 448_C|T, 451_A|G, 455_T|C, 467_T|C,
473_ACG|GTT, 488_T|C, 496_G|C, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 550_C|T, 556_G|T, 559_C|T, 565_C|T, 577_A|C, 584_T|C, 589_A|G, 610_C|T, 613_A|C, 628_T|C, 631_C|T,
649_G|A, 655_A|T, 664_T|A, 670_C|T, 676_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_725, 727_728, 732_736, 747_.|GTCCAGAAG, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C,
784_G|A, 802_A|G, 811_T|C, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 859_G|A, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G,
910_A|G, 916_C|T, 931_C|T, 934_G|C, 937_T|A, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A,
1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1138_G|A, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|A, 1171_TC|CA, 1181_A|G, 1183_T|C,
1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|C, 1249_C|T, 1255_C|A, 1261_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1288_T|C, 1294_A|G, 1306_G|A, 1321_C|T,
1327_A|G, 1330_C|T, 1333_T|C, 1339_C|T, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1433_A|G, 1435_C|T, 1441_T|C, 1444_G|A, 1462_C|T, 1465_G|T,
1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1501_A|G, 1504_A|G, 1507_T|C, 1510_A|C, 1516_A|G, 1525_G|A, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1546_T|C, 1558_C|T, 1561_T|A, 1570_A|G,
1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1675_T|C, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1696_T|C, 1701_G|A, 1705_AC|GT,
1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1760_A|C, 1762_G|A, 1771_G|A, 1781_G|A, 1785_A|G, 1789_C|G, 1792_T|G, 1798_A|G, 1801_A|G, 1804_T|C, 1807_T|G, 1810_A|G, 1813_T|C,
1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|A, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_TT|CC, 1900_C|T, 1915_C|A, 1921_C|T, 1926_TT|CA, 1936_G|A,
1942_A|G, 1946_T|C, 1951_A|G, 1957_C|G, 1969_T|C, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C,
2050_T|C, 2063_C|T, 2068_T|C, 2080_A|T, 2083_T|C, 2089_A|G, 2098_C|T, 2101_T|C, 2104_C|A, 2110_G|A, 2112_G|C, 2116_A|G, 2119_T|C, 2125_TC|CT, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G,
2188_A|G, 2193_TG|CA, 2197_A|G, 2215_A|G, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2266_G|A, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A,
2305_GC|AT, 2308_A|G, 2314_C|T, 2322_A|G, 2335_G|A, 2341_C|T, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C,
2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2554_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T,
2599_T|C, 2605_A|G, 2611_G|A, 2621_C|T, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2650_G|A, 2686_TT|CC, 2695_A|G, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C,
2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2752_A|G, 2755_T|A, 2761_A|T, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2794_T|C, 2809_T|C, 2812_G|A, 2827_C|T, 2833_G|A, 2836_G|A,
2845_A|G, 2863_A|G, 2878_A|G, 2881_C|T, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|T, 2950_C|A, 2962_C|T, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 3002_T|C, 3013_G|A,
3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3086_A|G, 3091_C|T, 3098_T|C, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A,
3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3184_G|A, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|A, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G,
3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3370_AG|GA, 3373_T|C,
3376_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3421_C|T, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3457_T|C, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3490_G|C, 3496_C|A,
3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|GT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3601_G|A, 3604_T|C, 3610_AG|CA, 3613_A|G, 3619_CT|TC,
3622_G|A, 3628_A|C, 3632_C|T, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T,
3715_A|G, 3718_C|T, 3733_G|C, 3739_T|C, 3745_C|T, 3748_T|C, 3778_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3826_A|G, 3829_A|G, 3832_A|T, 3850_C|T, 3853_G|A, 3860_G|A, 3868_C|A,
3871_C|T, 3883_TC|CT, 3886_A|G, 3895_T|A, 3898_T|C, 3901_C|T, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3958_CC|TT, 3961_C|G, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C,
4021_TG|CA, 4024_C|T, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4054_T|C, 4056_TC|CA, 4061_G|A, 4066_C|T, 4081_T|C, 4105_C|G, 4115_C|T, 4117_G|A, 4120_CT|AC, 4129_A|G, 4132_T|C, 4142_C|T,
4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4192_G|A, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T,
4267_T|A, 4273_GA|AG, 4276_T|C, 4289_C|A, 4304_G|A, 4306_T|C, 4309_C|T, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|A, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T,
4399_C|T, 4409_G|A, 4411_A|T, 4420_A|G, 4429_G|A, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_GC|AT, 4489_C|T, 4495_T|C, 4498_G|A, 4504_CC|TA, 4510_T|C, 4519_T|A,
4522_TC|CT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C, 4557_GG|AA, 4561_A|G, 4567_G|A, 4576_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T,
4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4654_C|T, 4663_C|A, 4667_T|C, 4669_G|A, 4672_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4720_A|G, 4729_T|C, 4735_A|G, 4741_A|G, 4744_T|C,
4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4759_T|C, 4765_G|A, 4772_A|G, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|G, 4852_G|A, 4855_A|G, 4861_C|T, 4865_T|C, 4870_C|A, 4873_G|A, 4878_TT|CC,
4882_A|C, 4885_A|G, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4930_G|T, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4975_T|C, 4984_A|T, 4987_A|T,
4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5077_C|T, 5080_G|A, 5092_G|A, 5098_A|G, 5101_A|G,
5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A,
5246_T|C, 5251_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5269_T|C, 5284_G|A, 5299_G|A, 5305_G|C, 5308_A|G, 5311_C|T, 5323_T|C, 5326_T|C, 5335_C|T, 5338_C|T, 5344_G|A, 5346_G|A, 5359_T|C, 5362_C|T,
5368_C|T, 5374_C|T, 5378_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5393_T|C, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5443_C|A, 5446_T|C, 5452_G|A, 5458_A|G, 5470_C|A,
5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5560_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T,
5639_C|T, 5641_A|G, 5644_T|G, 5650_A|G, 5662_A|C, 5668_C|T, 5683_A|G, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C,
5821_A|G, 5833_C|T, 5839_C|T, 5846_C|A, 5872_T|C, 5875_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5965_T|A, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G,
6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|A, 6034_C|T, 6037_C|T, 6043_C|T, 6047_T|C, 6065_T|C, 6067_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G,
6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6172_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6205_C|T, 6211_C|T, 6220_T|C, 6223_G|A, 6241_T|C, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C,
6277_A|G, 6283_T|A, 6286_G|A, 6299_T|C, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6373_T|C, 6388_A|G, 6403_G|C, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A,
6424_T|C, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6467_A|G, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6514_T|C, 6517_C|T, 6523_T|C, 6530_C|T, 6532_C|G,
6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6597_T|C, 6611_A|G, 6613_A|T, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6682_T|C, 6688_G|A, 6697_A|G, 6703_C|T,
6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6757_TG|CA, 6766_C|A, 6772_C|T, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T,
6835_A|G, 6841_A|C, 6844_C|T, 6847_C|T, 6850_T|C, 6860_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6904_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A,
6940_C|T, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6979_TC|CT, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7030_A|G, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T,
7069_A|G, 7075_C|A, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7156_T|C, 7171_G|T, 7174_GC|AT, 7201_A|G, 7210_T|C, 7216_C|T,
7225_A|T, 7228_G|A, 7240_C|T, 7247_T|A, 7252_C|T, 7255_TT|CC, 7258_A|G, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|AA, 7324_C|T, 7327_T|G, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT,
7405_A|G, 7411_C|T, 7414_T|G, 7417_T|C, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7519_C|T, 7527,
7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7646_A|G, 7651_A|G, 7654_A|G, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A,
7701_GA|AG, 7712_T|C, 7717_T|C, 7721_A|C, 7726_C|A, 7738_G|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7768_G|A, 7771_C|T, 7792_G|A, 7798_G|T, 7804_C|G,
7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7861_T|A, 7864_G|A, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7906_C|T, 7915_G|A, 7918_A|G, 7921_G|A, 7939_A|G, 7945_T|C, 7956_GA|AG, 7960_C|A,
7966_T|C, 7969_G|A, 7972_A|G, 7990_T|C, 7996_A|G, 8011_C|T, 8020_C|T, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8053_A|G, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|TC, 8092_G|A,
8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8154_CT|GC, 8161_G|C, 8167_C|A, 8169_A|G, 8173_C|T, 8176_T|C, 8185_G|A, 8188_A|G, 8209_T|G, 8212_C|T,
8215_G|A, 8218_A|G, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|T, 8263_C|T, 8272_C|T, 8275_G|A, 8284_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|A, 8320_TG|CA, 8324_A|G, 8326_A|G, 8329_T|C,
8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8392_C|T, 8395_G|T, 8401_T|C, 8404_C|T, 8407_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T,
8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8500_G|A, 8504_.|C, 8507, 8510_T|A, 8518_TT|CC, 8524_C|T, 8536_C|T, 8551_C|T, 8554_C|T, 8557_T|C, 8560_C|T, 8574_A|G,
8584_A|G, 8587_T|C, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8614_T|C, 8620_TC|CT, 8629_T|C, 8632_A|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C,
8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8785_C|T, 8788_C|T, 8792_C|T, 8797_C|T, 8801_G|A, 8806_G|T, 8815_AC|GT, 8821_C|T, 8830_A|G, 8833_A|G, 8836_T|C,
8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8929_G|A, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GA|AC, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8995_C|T,
9009_9010, 9017_.|AA, 9022_G|A, 9037_G|A, 9043_A|G, 9052_C|T, 9055_T|C, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9087_A|T, 9100_G|A, 9103_C|T, 9112_C|T, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G,
9157_A|G, 9160_G|T, 9166_C|T, 9172_CT|TC, 9187_A|C, 9190_T|C, 9205_G|A, 9212_A|C, 9214_G|A, 9217_T|G, 9226_A|T, 9229_C|T, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G,
9295_G|A, 9298_C|T, 9313_C|T, 9317_C|T, 9319_T|C, 9324_AA|GG, 9328_A|G, 9331_G|A, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9355_A|T, 9361_G|A, 9364_C|T, 9379_GT|CC, 9385_A|G, 9391_C|T,
9397_A|T, 9424_T|C, 9427_A|G, 9460_T|C, 9463_T|C, 9466_T|C, 9472_C|T, 9475_C|T, 9485_T|C, 9490_A|G, 9497_T|C, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C,
9556_T|C, 9559_AT|CA, 9562_A|G, 9566_C|T, 9573_GG|AA, 9577_G|T, 9580_G|A, 9590_AC|GT, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T,
9676_G|A, 9679_C|T, 9691_C|T, 9703_C|A, 9709_TA|GC, 9745_G|A, 9749_A|G, 9766_G|A, 9769_C|T, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_G|A, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9844_C|T,
9850_CA|AG, 9856_G|C, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G,
10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10072_C|T, 10081_G|A, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10140_AAA|GGG, 10144_A|G, 10148_A|C,
10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10240_TT|CC, 10243_A|G, 10246_C|A, 10249_C|A, 10255_T|C, 10261_A|G,
10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10294_C|T, 10297_A|G, 10315_T|C, 10330_C|T, 10336_A|G, 10338_TG|CC, 10348_T|C, 10355_A|G, 10361_10369, 10371_10375, 10378_10387, 10391_10397,
10401_10412, 10417, 10420_10421, 10424_10427, 10430_10437, 10439_10441, 10447_10450, 10452_10454, 10457, 10458_C|T, 10460_C|T, 10463_T|A, 10467_10470, 10475_AGA|TTG, 10522, 10524_G|A,
10533_A|G, 10535_T|A, 10647_C|T, 10658_AG|CC, 10662_.|T, 10681_CT|TC, 10703_C|T, 10802_.|T, 10817, 10843_AT|TA, 10847_C|A, 10849_A|G
Case 3 (A.1): PQ186339.1
| Target: 835 samples | Number of changes: 1482 | |
| BC: A.1 + A.1 | BC BR: 1443-1444 | BC BR coord: 10372 - 10373 |
| Direction L1: >> | Initial region span: 1-1433,1447-1482 | Gap history (edge excluded): 1433-1447 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 5.29e-12 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1433 |
189.933617 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1447 |
3.326184 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 80_A|G, 117_AC|TA, 130_T|C, 166_A|T, 171_G|A, 226_C|T, 247_T|C, 262_C|T, 280_CA|TG, 284_T|C, 294_AA|GG, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_G|A, 320_T|C, 327_A|G, 346_A|G,
349_C|A, 361_A|G, 363_G|A, 367_A|G, 385_C|G, 388_TT|CC, 400_A|T, 409_A|G, 421_T|A, 425_C|T, 430_T|A, 433_TC|CT, 442_G|T, 448_C|T, 454_T|C, 467_T|C, 475_G|T, 488_T|C, 496_G|C, 499_A|G,
501_A|G, 514_CC|TT, 517_A|G, 523_G|C, 535_C|T, 538_C|T, 547_A|C, 556_G|T, 577_A|C, 584_T|C, 596_T|A, 598_C|T, 604_C|T, 607_A|G, 610_C|T, 613_A|C, 628_T|C, 634_T|C, 649_G|A, 655_A|T, 664_T|A,
667_T|C, 670_C|T, 676_C|T, 682_G|A, 691_C|T, 697_A|G, 700_C|T, 703_A|T, 709_T|C, 718_C|T, 727_732, 734_736, 747_.|GTCTAGAAG, 757_C|T, 760_G|A, 763_T|C, 766_G|A, 790_C|T, 802_A|G, 823_T|C,
826_A|G, 829_G|A, 833_C|T, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|A, 877_A|G, 883_G|A, 886_TC|CT, 890_A|G, 892_C|T, 898_C|T, 901_CC|TT, 904_T|A, 910_A|G, 931_C|T, 940_CC|TT,
943_A|G, 946_G|A, 949_C|T, 961_T|C, 964_G|A, 967_C|T, 970_C|T, 973_A|G, 985_T|A, 991_T|A, 997_C|T, 1036_T|C, 1042_T|C, 1045_CC|TT, 1051_G|A, 1054_A|G, 1066_C|T, 1072_T|G, 1090_T|C, 1094_T|C,
1102_C|A, 1108_A|G, 1111_G|A, 1117_A|T, 1127_A|G, 1138_G|A, 1140_TG|CA, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_T|C, 1183_T|C, 1189_C|T, 1195_C|T, 1204_T|C, 1207_A|T, 1210_G|A, 1216_CC|TT,
1219_A|G, 1222_T|C, 1228_G|A, 1234_A|G, 1237_G|A, 1240_CA|TC, 1243_T|C, 1246_G|C, 1249_C|T, 1252_G|A, 1255_C|A, 1261_T|C, 1267_T|C, 1279_C|G, 1282_T|C, 1285_C|T, 1294_A|G, 1300_G|A, 1306_G|A,
1321_C|T, 1333_T|C, 1339_C|T, 1342_A|G, 1351_TT|CC, 1366_T|C, 1378_T|C, 1390_C|T, 1393_A|G, 1399_AT|GC, 1408_A|T, 1411_G|A, 1423_A|G, 1426_T|C, 1433_A|G, 1435_C|T, 1438_C|T, 1453_G|A,
1471_C|T, 1474_C|T, 1480_A|G, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1504_A|G, 1507_T|C, 1516_A|G, 1522_G|A, 1525_G|A, 1531_T|C, 1534_G|A, 1544_G|A, 1546_T|C, 1552_T|C, 1558_C|T,
1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1603_C|T, 1606_G|A, 1609_C|T, 1618_G|A, 1621_A|T, 1642_G|T, 1660_T|C, 1669_C|G, 1675_T|C, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1701_G|A,
1705_AC|GT, 1711_C|T, 1723_G|A, 1732_CT|TC, 1738_A|G, 1747_T|C, 1753_C|T, 1760_A|C, 1765_T|C, 1782_A|G, 1785_A|G, 1790_C|T, 1792_T|G, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1813_T|C,
1816_T|C, 1818_CT|TA, 1822_C|T, 1855_G|A, 1858_A|G, 1861_C|T, 1867_A|G, 1870_A|G, 1876_T|C, 1879_C|T, 1887_T|C, 1900_C|T, 1909_C|T, 1915_C|A, 1926_TT|CC, 1939_G|A, 1946_T|C, 1969_T|C,
1978_A|G, 1993_T|C, 2000_G|T, 2003_A|G, 2008_T|C, 2020_G|A, 2023_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2047_C|T, 2053_T|G, 2059_A|G, 2063_C|T, 2080_A|C, 2083_T|C, 2086_T|C, 2089_A|G,
2092_C|T, 2098_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2119_T|C, 2122_A|T, 2128_C|G, 2146_A|G, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_T|C, 2197_A|G, 2201_C|T, 2209_C|T, 2215_A|G,
2218_CA|TG, 2221_C|T, 2224_C|T, 2230_T|C, 2233_C|T, 2239_C|T, 2248_G|A, 2251_C|T, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2269_A|G, 2275_T|A, 2278_T|C, 2280_C|T, 2305_G|A, 2308_A|G, 2314_C|T,
2318_T|C, 2322_AC|GT, 2350_G|A, 2353_A|C, 2376_CA|TG, 2380_A|G, 2395_C|T, 2408_T|C, 2413_A|T, 2419_G|T, 2432_T|C, 2437_T|C, 2446_T|G, 2455_T|C, 2464_C|T, 2467_C|A, 2488_G|A, 2494_G|A,
2497_C|T, 2500_A|G, 2503_T|C, 2506_TA|AG, 2515_A|C, 2521_A|G, 2524_C|T, 2527_T|G, 2533_C|T, 2548_C|T, 2566_T|C, 2569_T|A, 2575_G|A, 2581_A|C, 2593_A|G, 2599_T|C, 2602_T|C, 2605_A|G,
2620_CC|TT, 2626_T|C, 2632_T|C, 2635_C|T, 2641_T|G, 2644_G|A, 2650_G|A, 2659_A|G, 2668_A|G, 2686_TT|CC, 2695_A|G, 2698_C|T, 2701_G|A, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G,
2722_G|C, 2725_G|A, 2728_T|C, 2731_A|C, 2734_G|A, 2737_TG|CA, 2740_T|C, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|T, 2776_G|T, 2782_TC|CT, 2788_G|A, 2794_T|C, 2803_T|C, 2821_G|A, 2827_C|T,
2830_A|G, 2833_G|A, 2836_G|A, 2860_T|C, 2863_A|G, 2878_A|G, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2947_A|T, 2950_C|A, 2962_C|T, 2983_A|G, 2986_C|T, 3007_T|G, 3013_G|A,
3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|A, 3098_T|C, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A,
3133_A|G, 3142_T|C, 3145_G|A, 3169_T|C, 3172_A|C, 3178_C|T, 3187_A|G, 3193_C|T, 3205_T|G, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|A, 3238_T|C, 3244_G|A, 3250_A|G, 3268_A|G, 3271_A|G,
3289_T|C, 3298_G|A, 3301_T|C, 3304_C|T, 3307_GA|AG, 3310_CA|TG, 3316_T|C, 3319_CAA|TGG, 3328_T|C, 3334_G|T, 3337_A|G, 3349_A|G, 3358_G|C, 3364_C|T, 3370_AG|GA, 3373_T|C, 3382_A|G, 3394_C|A,
3397_C|A, 3400_C|T, 3412_T|A, 3421_C|T, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3457_T|C, 3460_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3480_G|A, 3484_T|C, 3490_G|T, 3496_C|A, 3502_T|G, 3511_A|G,
3514_AA|GG, 3517_A|C, 3523_T|A, 3535_TT|GC, 3566_G|T, 3569_C|T, 3571_A|G, 3573_G|A, 3577_A|G, 3589_A|C, 3598_G|A, 3610_AG|CA, 3620_T|C, 3622_G|A, 3628_A|C, 3632_C|T, 3634_G|A, 3637_C|T,
3640_G|A, 3643_A|G, 3646_A|G, 3649_T|C, 3652_CC|GT, 3655_T|G, 3658_T|C, 3664_G|A, 3667_A|G, 3670_CAC|AGT, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3715_A|G, 3718_C|T, 3727_T|C,
3733_G|C, 3739_T|A, 3745_C|T, 3751_A|G, 3757_A|G, 3760_A|T, 3763_G|A, 3782_C|T, 3784_C|G, 3790_C|A, 3793_A|G, 3820_G|A, 3826_A|G, 3832_A|C, 3835_C|T, 3847_T|A, 3856_T|C, 3860_G|A, 3868_C|A,
3871_C|G, 3883_T|C, 3886_A|G, 3895_T|G, 3898_T|C, 3901_C|T, 3908_C|T, 3910_G|A, 3931_T|C, 3934_G|A, 3940_A|G, 3946_TA|CG, 3949_C|A, 3953_T|C, 3959_C|T, 3961_C|G, 3967_T|G, 3982_C|G, 3985_T|A,
4006_CG|AA, 4009_A|G, 4013_T|C, 4021_TG|CA, 4030_T|C, 4034_A|G, 4036_A|C, 4045_T|C, 4054_T|C, 4056_TC|CA, 4060_G|A, 4066_C|T, 4075_G|A, 4081_T|C, 4087_T|C, 4105_C|G, 4108_A|T, 4120_C|A,
4129_A|G, 4142_C|T, 4150_A|C, 4154_C|A, 4165_C|A, 4171_T|C, 4174_G|A, 4177_A|G, 4183_T|C, 4198_G|A, 4204_C|T, 4210_A|G, 4219_A|C, 4229_C|T, 4234_A|G, 4246_T|C, 4258_G|A, 4264_C|T, 4267_T|G,
4270_T|C, 4274_A|G, 4289_C|A, 4291_C|T, 4304_G|A, 4306_T|C, 4321_G|A, 4330_G|A, 4333_A|C, 4336_G|A, 4341_A|G, 4348_T|A, 4351_T|A, 4360_A|T, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T,
4399_C|T, 4411_A|T, 4423_A|G, 4429_G|A, 4435_G|A, 4438_G|A, 4441_T|C, 4444_T|C, 4453_A|G, 4456_G|T, 4465_C|T, 4469_G|A, 4474_G|C, 4489_C|T, 4495_T|C, 4498_G|A, 4504_CC|TA, 4519_T|A,
4522_TC|CA, 4531_C|T, 4540_G|T, 4544_C|T, 4547_T|C, 4549_T|C, 4557_G|A, 4561_A|G, 4576_G|A, 4579_T|C, 4583_T|C, 4585_G|C, 4597_CA|TG, 4600_T|A, 4605_AG|CA, 4609_CA|TG, 4612_C|T, 4618_A|G,
4627_TC|CT, 4630_G|A, 4639_G|A, 4651_A|T, 4660_A|G, 4663_C|T, 4666_CT|TC, 4669_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4711_G|C, 4720_A|G, 4732_C|G, 4741_A|T, 4744_T|C, 4747_C|T, 4753_C|T,
4756_G|A, 4769_T|C, 4771_GA|AG, 4774_T|C, 4778_T|A, 4780_T|C, 4792_A|C, 4813_T|C, 4819_C|T, 4829_T|C, 4834_A|G, 4840_A|G, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|T, 4873_G|A, 4876_T|C,
4878_TT|CC, 4882_A|C, 4891_C|T, 4900_C|T, 4903_C|T, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4939_G|C, 4954_T|G, 4957_C|G, 4969_T|C, 4975_T|C, 4981_T|C, 4984_A|C, 4987_A|C,
4993_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5014_G|A, 5020_T|A, 5026_G|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5088_TG|CA, 5092_G|A, 5098_A|G, 5101_A|G, 5103_A|G,
5107_G|A, 5113_C|T, 5116_A|G, 5119_G|A, 5140_A|G, 5152_TG|AA, 5155_C|T, 5161_T|C, 5164_T|C, 5170_T|C, 5173_A|G, 5176_T|C, 5179_G|A, 5182_G|A, 5185_A|T, 5188_A|G, 5190_.|C, 5195_C|T, 5200,
5206_CT|TC, 5212_C|T, 5215_G|A, 5218_C|T, 5230_CT|GC, 5239_T|G, 5245_GT|TC, 5251_C|T, 5257_C|T, 5269_T|C, 5272_T|C, 5275_A|G, 5287_T|C, 5293_C|T, 5299_G|A, 5305_G|A, 5308_A|G, 5323_T|C,
5326_T|C, 5332_T|G, 5335_C|T, 5344_G|A, 5346_GA|AG, 5368_C|T, 5371_T|C, 5374_C|T, 5380_A|G, 5383_T|A, 5389_G|A, 5393_T|C, 5398_A|G, 5407_G|A, 5410_T|G, 5413_T|G, 5416_C|T, 5422_A|G, 5440_A|G,
5443_C|T, 5458_A|G, 5461_T|C, 5470_C|A, 5473_T|C, 5479_T|C, 5488_G|A, 5491_C|T, 5500_G|A, 5530_A|T, 5539_G|T, 5542_T|A, 5545_G|A, 5569_A|G, 5575_T|G, 5584_A|G, 5593_A|G, 5596_G|A, 5599_C|T,
5602_A|T, 5605_C|T, 5620_C|T, 5623_A|G, 5626_G|T, 5638_CC|TT, 5641_A|G, 5662_A|C, 5668_C|T, 5683_A|G, 5689_A|G, 5692_T|C, 5701_T|A, 5708_T|C, 5710_G|A, 5713_T|C, 5716_G|A, 5722_A|G, 5737_C|G,
5740_G|A, 5749_A|G, 5758_G|A, 5760_G|A, 5764_A|G, 5773_G|A, 5776_A|T, 5779_G|A, 5797_T|C, 5800_A|C, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5857_T|C, 5872_T|C, 5875_G|A, 5893_A|G, 5914_A|G,
5917_G|A, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5938_C|T, 5941_T|C, 5947_T|C, 5953_G|A, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|A, 5980_C|T, 5983_A|G, 5989_A|G, 5992_C|T, 5998_C|T, 6001_C|T,
6004_T|C, 6013_T|A, 6023_A|G, 6025_T|C, 6034_C|T, 6037_C|T, 6047_T|C, 6052_G|A, 6070_C|T, 6088_T|C, 6113_G|A, 6115_T|A, 6118_A|G, 6121_A|G, 6124_T|A, 6127_A|G, 6136_T|C, 6142_T|A, 6154_AC|GT,
6157_G|A, 6160_G|A, 6169_G|A, 6174_A|G, 6182_A|C, 6187_AC|GT, 6199_T|C, 6211_C|T, 6214_T|C, 6220_T|C, 6223_G|A, 6229_A|G, 6232_G|T, 6244_TT|AC, 6259_T|C, 6262_T|A, 6271_T|C, 6280_C|T,
6283_T|A, 6292_T|C, 6299_T|C, 6310_C|T, 6316_A|G, 6322_G|A, 6334_T|C, 6351_A|G, 6361_C|G, 6367_G|A, 6373_T|C, 6379_A|G, 6385_G|T, 6400_T|C, 6403_G|C, 6406_GT|TG, 6409_T|C, 6415_T|C, 6427_T|C,
6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6445_T|G, 6448_T|A, 6451_A|G, 6457_A|G, 6478_T|A, 6490_T|C, 6493_A|G, 6508_A|G, 6514_T|C, 6517_C|T, 6523_T|C, 6529_CC|TT, 6532_CC|GA, 6547_C|T,
6550_T|C, 6569_C|T, 6571_A|G, 6595_A|G, 6611_A|G, 6613_A|T, 6622_AC|GT, 6625_A|G, 6634_G|T, 6664_A|G, 6667_C|A, 6670_C|T, 6673_T|C, 6682_T|C, 6688_G|A, 6703_C|T, 6706_C|T, 6709_T|C, 6715_T|C,
6724_C|T, 6730_A|G, 6733_C|T, 6745_T|C, 6757_TG|CA, 6766_C|G, 6769_A|C, 6772_C|T, 6790_T|G, 6794_A|G, 6796_C|T, 6799_C|A, 6805_A|G, 6811_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6835_A|G,
6841_A|T, 6844_C|T, 6850_T|C, 6859_C|T, 6866_C|T, 6874_A|C, 6876_C|T, 6880_G|A, 6883_A|G, 6889_C|T, 6895_A|G, 6898_C|T, 6907_G|A, 6910_A|G, 6916_A|G, 6919_G|A, 6925_C|T, 6934_G|A, 6940_C|T,
6943_A|G, 6952_T|C, 6955_TG|CA, 6958_TT|CG, 6969_GT|AC, 6976_G|A, 6986_C|T, 6988_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|G, 7030_A|G, 7039_T|C, 7046_T|C, 7054_C|T, 7063_A|G,
7066_C|T, 7069_A|G, 7079_C|T, 7081_G|A, 7084_T|C, 7114_CC|TT, 7117_T|G, 7120_T|A, 7129_C|T, 7135_G|T, 7138_A|C, 7141_A|G, 7156_T|C, 7171_G|C, 7174_G|A, 7177_GG|AA, 7180_C|T, 7211_C|T,
7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T, 7243_C|T, 7247_T|A, 7249_T|C, 7255_T|C, 7258_A|G, 7261_T|C, 7270_A|G, 7273_G|A, 7279_G|A, 7286_C|T, 7288_T|G, 7297_A|G, 7300_G|A, 7306_C|T, 7312_C|T,
7318_CG|TA, 7321_G|A, 7324_C|T, 7327_T|A, 7339_G|A, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7408_T|C, 7412_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C,
7450_A|G, 7453, 7459_.|C, 7465_G|A, 7468_T|C, 7480_CC|AT, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7504_G|A, 7516_A|G, 7519_C|T, 7528_T|C, 7531_T|G, 7552_C|G, 7561_A|G, 7571_A|C,
7580_C|T, 7582_C|T, 7597_A|T, 7612_A|C, 7630_A|G, 7634_C|A, 7642_C|A, 7645_G|A, 7651_A|G, 7666_A|G, 7675_G|A, 7681_A|G, 7691_T|C, 7701_G|A, 7712_T|C, 7717_T|C, 7726_C|A, 7732_T|C, 7744_T|C,
7750_T|A, 7753_G|A, 7762_G|A, 7765_T|C, 7771_C|T, 7789_C|T, 7798_G|T, 7804_C|G, 7807_G|A, 7813_C|T, 7816_A|T, 7819_GT|AC, 7822_A|G, 7825_G|A, 7837_G|A, 7840_T|C, 7843_C|T, 7855_G|A, 7861_T|C,
7869_T|C, 7876_G|A, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7906_C|T, 7915_G|A, 7918_A|G, 7921_G|A, 7924_A|G, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7969_G|A, 7990_T|C,
8011_C|T, 8014_C|T, 8023_A|G, 8025_C|T, 8041_A|G, 8044_A|G, 8065_T|C, 8071_T|C, 8074_C|T, 8077_T|C, 8086_A|G, 8089_AT|TC, 8092_G|A, 8095_A|G, 8098_G|A, 8101_C|G, 8104_A|C, 8120_G|A, 8123_A|C,
8134_T|C, 8137_T|C, 8140_A|T, 8143_A|G, 8152_GGC|TAG, 8158_T|C, 8161_G|T, 8167_C|G, 8169_A|G, 8188_A|G, 8209_T|G, 8212_C|A, 8215_G|A, 8218_AC|GT, 8224_A|G, 8245_C|T, 8248_A|G, 8251_A|G,
8254_G|C, 8260_G|A, 8266_T|C, 8269_C|T, 8275_G|A, 8278_T|C, 8281_C|T, 8284_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8302_G|A, 8305_T|A, 8314_C|T, 8317_C|T, 8320_TG|CA, 8329_T|C, 8341_A|G, 8344_A|G,
8350_C|T, 8354_C|T, 8362_G|A, 8374_T|C, 8380_T|A, 8383_A|C, 8392_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8440_A|G, 8446_G|A, 8449_A|G, 8452_C|A, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|C,
8476_A|G, 8485_G|A, 8488_G|A, 8505_TGA|CAG, 8510_T|A, 8512_T|C, 8518_TT|CC, 8551_C|T, 8557_T|C, 8574_A|G, 8584_A|G, 8587_T|C, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|C, 8608_T|A, 8611_T|G,
8614_T|C, 8617_A|G, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|T, 8671_T|A, 8680_C|T, 8692_G|A, 8707_A|G, 8719_C|T, 8722_C|A, 8743_G|T, 8746_A|G, 8749_T|C, 8755_G|A, 8758_C|T, 8764_A|G,
8770_C|T, 8773_C|T, 8782_G|A, 8785_C|T, 8797_C|T, 8800_A|G, 8808_A|G, 8815_A|G, 8824_A|G, 8830_A|G, 8833_A|G, 8836_T|C, 8839_T|A, 8851_A|C, 8854_T|C, 8866_T|C, 8874_A|T, 8923_C|T, 8926_A|G,
8929_G|A, 8939_C|T, 8954_A|C, 8957_AA|CG, 8962_G|A, 8968_A|G, 8971_A|G, 8974_C|T, 9019_G|A, 9022_G|A, 9034_T|C, 9037_G|A, 9040_A|G, 9043_A|G, 9046_G|A, 9052_C|T, 9055_T|C, 9061_A|C, 9067_T|C,
9074_C|T, 9082_G|C, 9085_G|A, 9100_G|A, 9113_C|T, 9115_G|A, 9127_T|C, 9133_T|A, 9136_C|T, 9142_A|G, 9151_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9175_A|G, 9179_T|C, 9187_A|C, 9190_T|C,
9203_C|T, 9208_T|C, 9212_A|C, 9214_G|A, 9217_T|A, 9232_C|T, 9235_G|A, 9244_C|A, 9259_G|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9313_C|T, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_A|G,
9335_CAA|TTG, 9343_G|A, 9361_G|A, 9367_A|G, 9379_G|C, 9382_G|A, 9391_C|A, 9397_A|T, 9400_G|A, 9403_A|G, 9406_C|A, 9424_T|C, 9427_A|G, 9430_A|G, 9439_A|G, 9445_C|T, 9454_A|G, 9467_C|T,
9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9505_A|G, 9527_A|G, 9529_A|G, 9532_T|C, 9538_A|G, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|TG, 9562_A|G, 9565_T|C, 9570_CC|TA, 9573_GG|AA, 9577_G|T,
9590_A|G, 9598_C|T, 9601_A|C, 9607_C|T, 9610_AC|GT, 9625_G|A, 9637_C|T, 9646_G|C, 9652_G|C, 9658_C|T, 9670_C|T, 9676_G|A, 9679_C|T, 9685_C|T, 9709_TA|GC, 9712_A|C, 9745_G|A, 9754_T|C,
9769_C|G, 9775_T|C, 9784_C|T, 9790_T|C, 9796_A|G, 9817_G|A, 9820_T|C, 9835_A|G, 9838_A|T, 9844_C|T, 9850_C|A, 9859_A|G, 9865_G|A, 9868_G|T, 9880_C|T, 9898_A|G, 9901_A|G, 9904_T|A, 9910_C|A,
9916_A|G, 9919_C|T, 9938_C|T, 9946_T|C, 9955_A|G, 9961_C|T, 9970_A|G, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|G, 10018_A|G, 10024_C|T, 10027_A|C, 10030_A|G, 10036_GA|TG, 10051_G|A,
10066_G|A, 10096_A|G, 10103_AC|GT, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10154_G|A, 10159_T|C, 10162_T|C, 10174_A|G, 10186_G|T, 10213_T|C, 10216_G|A, 10222_C|T,
10228_C|A, 10231_C|T, 10240_TT|CC, 10243_A|G, 10246_C|G, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10294_C|T, 10297_A|G, 10312_G|A, 10315_T|C, 10336_A|G,
10338_TG|CC, 10342_T|C, 10348_T|C, 10355_A|G, 10358_A|G, 10363_C|T, 10365_AA|TG, 10369_10377, 10381_10382, 10385, 10391_10397, 10403_10405, 10407, 10409_10411, 10412_C|G, 10416_10417,
10418_C|T, 10421_10429, 10434_10442, 10444_10445, 10450, 10451_C|T, 10455_10460, 10462, 10465_10475, 10522, 10524_G|A, 10526_C|T, 10528_G|A, 10533_A|G, 10535_T|G, 10554_CAC|TGT, 10558_A|G,
10562_T|C, 10605_A|C, 10607_C|T, 10620_A|T, 10635_G|A, 10639_C|T, 10647_C|T, 10658_.|C, 10659_AG|CA, 10681_C|T, 10685_C|T, 10740_A|G, 10817_T|C, 10847_C|A
Case 3 (A.1): PQ186344.1
| Target: 835 samples | Number of changes: 1445 | |
| BC: A.1.NmC2 + A.1 + A.1.NmC2 | BC BR: 163-164, 1441-1442 | BC BR coord: 1407 - 1408, 10532 - 10533 |
| Direction L1: >> | Initial region span: 1-119,1432-1441,1442-1445 | Gap history (edge excluded): 119-1442 -> 119-1432 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 3.04e-123 | |
| Rec. model vs L1: 8.46e-302 | Rec. model vs L2: 4.42e-06 | |
| Flags: Model_2BP_Best | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
119 |
7.738257 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1432 |
3.072210 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1442 |
0.000000 |
-1728.884026 |
6423.768051 |
0.000000e+00 |
|
|
|
| A.1.NmC2 |
0 |
1441 |
-0.122999 |
-349.547923 |
3665.095847 |
3.043373e-123 |
|
|
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1442 |
7.352352 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 80_A|G, 108_C|T, 118_C|A, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 280_CA|TG, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|T, 327_A|G,
346_A|G, 358_T|C, 361_A|G, 363_G|A, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 424_C|T, 427_T|A, 434_C|T, 448_C|T, 451_A|G, 455_T|C, 467_T|C, 473_ACG|GTT,
488_T|C, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 550_C|T, 556_G|T, 565_C|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A,
655_A|T, 664_T|A, 670_C|T, 676_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 706_T|C, 709_T|C, 718_C|T, 724_725, 727_728, 732_736, 747_.|GTCCAGAAG, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A,
802_A|G, 811_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 859_G|A, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T,
934_G|C, 937_T|A, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1066_C|T, 1072_T|G,
1094_T|C, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1138_G|A, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|A, 1171_TC|CA, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G,
1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1249_C|T, 1255_C|A, 1261_T|C, 1279_C|A, 1285_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1339_C|T, 1352_T|C,
1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|T, 1411_G|A, 1423_A|G, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G,
1504_A|G, 1507_T|C, 1516_A|G, 1525_G|T, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1546_T|C, 1549_C|T, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1593_G|A, 1606_G|A, 1618_G|A, 1621_A|T,
1642_G|C, 1666_T|C, 1669_C|G, 1675_T|C, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1696_T|C, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|C, 1747_T|C, 1753_C|T,
1760_A|C, 1762_G|A, 1771_G|A, 1781_G|A, 1785_A|G, 1789_C|G, 1792_T|G, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1813_T|C, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C,
1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1900_C|T, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1951_A|G, 1957_C|A, 1966_G|A, 1969_T|C, 1975_G|A, 1978_A|G,
1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2047_C|T, 2063_C|T, 2068_T|C, 2080_A|T, 2083_T|C, 2089_A|G,
2098_C|T, 2101_T|C, 2104_C|A, 2110_G|A, 2112_GA|CT, 2116_A|G, 2125_TC|CT, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|T, 2164_A|G, 2188_A|G, 2193_TG|CA, 2197_A|G, 2201_C|T, 2215_A|G, 2218_CA|TG,
2221_C|T, 2230_T|C, 2233_CA|TG, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_GC|AT, 2308_A|G, 2314_C|T, 2322_A|G,
2341_C|T, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A,
2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2518_T|C, 2524_C|T, 2527_T|A, 2541_A|G, 2548_C|T, 2554_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C,
2605_A|G, 2611_G|A, 2621_C|T, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2650_G|A, 2686_TT|CC, 2695_A|G, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|T, 2725_G|A,
2728_TC|CT, 2734_G|A, 2737_TG|CA, 2752_A|G, 2755_T|A, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2794_T|C, 2809_T|C, 2812_G|A, 2821_G|A, 2827_C|T, 2833_G|A, 2836_G|A, 2863_A|G,
2878_A|G, 2881_C|T, 2894_C|A, 2896_G|A, 2899_C|G, 2905_T|C, 2908_T|C, 2920_G|A, 2932_G|A, 2938_G|A, 2947_A|T, 2950_C|A, 2962_C|T, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C,
3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3098_T|C, 3104_GC|AT, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A,
3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G,
3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3340_A|G, 3343_A|G, 3352_C|G, 3355_C|T, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A,
3409_G|A, 3412_T|A, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3457_T|C, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C,
3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3601_G|A, 3604_T|C, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3628_A|C, 3632_C|T, 3634_G|A, 3637_C|T,
3640_G|A, 3643_A|G, 3646_A|G, 3649_TC|CA, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3688_G|A, 3691_T|C, 3694_C|T, 3715_A|G, 3718_C|T, 3733_G|C, 3739_T|C, 3745_C|T, 3748_T|C,
3763_G|A, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3821_A|G, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3853_G|A, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3895_T|A, 3898_T|C,
3901_C|T, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4021_TG|CA, 4024_C|T, 4036_A|C, 4039_GG|CA, 4042_C|T, 4045_T|C,
4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4099_C|T, 4105_C|G, 4117_G|A, 4120_CT|AC, 4129_A|G, 4132_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C,
4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4276_T|C, 4285_A|G, 4289_C|A, 4306_T|C,
4309_C|T, 4330_G|A, 4333_A|T, 4336_G|A, 4345_G|A, 4351_T|A, 4360_A|T, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4409_G|A, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A,
4441_T|C, 4450_G|A, 4453_A|G, 4465_C|T, 4480_C|T, 4483_GC|AT, 4495_T|C, 4498_G|A, 4504_CC|TA, 4510_T|C, 4519_T|C, 4522_TC|CT, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4547_T|C, 4549_T|C,
4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4576_G|A, 4583_T|C, 4585_G|T, 4591_T|C, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4654_C|T, 4663_C|A,
4667_T|C, 4669_G|A, 4672_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4720_A|G, 4729_T|C, 4735_A|G, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4759_T|C, 4765_G|A,
4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4798_A|G, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|G, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4885_A|G,
4888_G|A, 4891_C|T, 4894_G|A, 4897_C|G, 4900_C|T, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4924_C|T, 4930_G|T, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4975_T|C, 4984_A|T, 4987_A|T,
4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5053_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5098_A|G, 5101_A|G,
5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5125_G|A, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|C, 5207_T|C, 5212_C|T, 5215_G|A, 5230_C|G, 5239_T|A,
5246_T|C, 5251_C|T, 5257_C|T, 5260_G|A, 5284_G|A, 5287_T|C, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5314_C|T, 5323_T|C, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5359_T|C, 5362_C|T, 5368_C|T,
5374_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5393_T|C, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5446_T|C, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C,
5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5560_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T,
5639_C|T, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G,
5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C,
5989_A|G, 6004_T|C, 6023_A|G, 6025_T|C, 6031_C|A, 6034_C|T, 6037_C|T, 6043_C|T, 6047_T|C, 6065_T|C, 6067_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6124_T|A, 6127_A|G, 6142_T|A,
6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6241_T|C, 6244_T|A, 6253_G|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G,
6283_T|A, 6286_G|A, 6292_T|C, 6310_C|T, 6316_A|G, 6319_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6367_G|A, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A,
6421_G|A, 6430_A|G, 6433_T|C, 6439_G|A, 6451_AG|GA, 6457_A|G, 6460_T|C, 6472_A|G, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6514_T|C, 6517_C|T, 6523_T|C, 6530_C|T,
6532_C|G, 6544_A|G, 6547_C|T, 6550_T|C, 6569_C|T, 6597_T|C, 6611_A|G, 6613_A|T, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6649_T|C, 6664_A|G, 6667_C|T, 6673_T|C, 6682_T|C, 6688_G|A,
6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6748_C|T, 6757_TG|CA, 6766_C|A, 6772_C|T, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6818_T|A, 6823_C|T,
6826_A|G, 6835_A|G, 6841_A|T, 6844_C|T, 6847_C|T, 6850_T|C, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6934_G|A, 6940_C|T, 6943_A|G,
6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6979_TC|CT, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7078_C|T,
7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7156_T|C, 7171_G|T, 7174_GC|AT, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T,
7247_T|A, 7255_TT|CC, 7258_A|G, 7267_C|T, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_T|A, 7405_A|G, 7411_C|T,
7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7456_C|T, 7463_T|C, 7480_C|G, 7483_A|G, 7486_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7527, 7531_.|G, 7552_C|G,
7571_A|C, 7579_TC|CT, 7585_T|C, 7597_A|T, 7612_A|C, 7624_A|G, 7630_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7690_GT|AC, 7699_G|A, 7701_GA|AG,
7712_T|C, 7721_A|C, 7726_C|A, 7738_G|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7768_G|A, 7771_C|T, 7792_G|A, 7798_G|T, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G,
7837_G|A, 7849_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7906_C|T, 7915_G|A, 7918_A|G, 7920_AG|GA, 7924_A|G, 7936_C|T, 7939_A|G, 7945_T|C, 7948_T|C,
7956_GA|AG, 7960_C|A, 7963_C|T, 7966_T|C, 7969_G|A, 7990_T|C, 7996_A|G, 8011_C|T, 8020_C|T, 8023_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8053_A|G, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|TC,
8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8154_CT|GC, 8161_G|C, 8167_C|A, 8169_A|G, 8188_A|G, 8209_T|G, 8212_C|T, 8215_G|A,
8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|T, 8263_C|T, 8275_G|A, 8281_C|T, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|A, 8320_TG|CA, 8326_A|G, 8329_T|C,
8338_C|T, 8347_C|T, 8354_C|T, 8356_G|A, 8362_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8392_CC|TT, 8395_G|T, 8398_G|A, 8404_C|T, 8407_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A,
8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8536_C|T, 8551_C|T, 8554_C|T, 8557_T|C,
8560_C|T, 8566_T|C, 8574_A|G, 8584_A|G, 8587_T|C, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8614_T|C, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G, 8671_T|A,
8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8725_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_A|G, 8821_C|T, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T,
8851_A|C, 8860_A|G, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8929_G|A, 8939_C|T, 8941_G|A, 8953_AA|GC, 8956_GAA|ACG, 8962_G|A, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8986_T|C,
9009_9010, 9017_.|AA, 9022_G|A, 9031_G|A, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9112_C|T, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T,
9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9205_G|A, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9263_A|G, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|A,
9295_G|A, 9298_C|T, 9313_C|T, 9319_T|C, 9324_AA|GG, 9328_A|G, 9331_G|A, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9364_C|T, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T,
9424_T|C, 9427_A|G, 9430_A|G, 9448_G|A, 9454_A|G, 9460_T|C, 9463_T|C, 9466_TC|CT, 9472_C|T, 9485_T|C, 9490_A|G, 9497_T|C, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G,
9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9566_C|T, 9573_GG|AA, 9577_G|T, 9590_A|G, 9595_G|A, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9625_G|A, 9637_C|T, 9643_T|C, 9646_G|T, 9658_C|T,
9670_C|T, 9679_C|T, 9691_C|T, 9703_C|A, 9709_TA|GC, 9745_G|A, 9749_A|G, 9754_T|C, 9763_T|C, 9766_G|A, 9769_C|T, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_G|A, 9817_G|A, 9823_G|A, 9838_A|T,
9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9865_G|A, 9880_C|T, 9898_A|G, 9904_T|A, 9907_C|T, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9961_C|T, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T,
9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10051_G|A, 10066_G|A, 10072_C|T, 10096_A|G, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10140_AAA|GGG, 10144_A|G,
10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A,
10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10294_C|T, 10297_A|G, 10303_C|T, 10309_C|T, 10315_T|C, 10330_C|T, 10336_A|G, 10338_TG|CC, 10348_T|C, 10351_C|T,
10355_A|G, 10362, 10365_10366, 10368_10372, 10373_T|C, 10376_10379, 10382, 10385, 10391_10397, 10403_C|T, 10408_10416, 10418_C|T, 10421_A|T, 10423_10424, 10426_10430, 10435_10447,
10450_10460, 10465_10476, 10522, 10524_G|A, 10533_A|G, 10535_T|A, 10844_T|C, 10847_C|A
Case 3 (A.1): PQ186349.1
| Target: 835 samples | Number of changes: 1487 | |
| BC: A.1 + A.1 | BC BR: 1468-1469 | BC BR coord: 10521 - 10522 |
| Direction L1: >> | Initial region span: 1-1468,1485-1487 | Gap history (edge excluded): 1468-1485 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.92e-08 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1468 |
207.372904 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1485 |
1.043567 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 80_A|G, 117_AC|TA, 130_T|C, 166_A|T, 171_G|A, 178_T|C, 226_C|T, 247_T|C, 262_C|T, 265_T|C, 280_CA|TG, 284_T|C, 294_AA|GG, 304_A|T, 310_CC|TT, 313_A|G, 318_G|A, 320_T|C, 327_A|G, 332_C|T,
346_A|G, 349_C|A, 352_G|A, 361_A|G, 363_G|A, 367_A|G, 385_C|G, 388_TT|CC, 400_A|T, 409_A|G, 421_T|A, 430_T|A, 433_TC|CT, 442_G|T, 448_C|T, 451_A|G, 454_T|C, 467_T|C, 475_G|T, 488_T|C,
496_G|C, 499_A|G, 501_A|G, 514_CC|TT, 517_A|G, 523_G|C, 538_C|T, 547_A|C, 556_G|T, 568_C|T, 577_A|C, 584_T|C, 589_A|G, 596_T|A, 598_C|T, 604_C|T, 607_A|G, 610_C|T, 613_A|C, 628_T|C, 634_T|C,
637_C|T, 649_G|A, 655_A|T, 664_T|A, 670_C|T, 676_C|T, 682_G|A, 691_C|T, 697_A|G, 700_C|T, 703_A|T, 709_T|C, 723_CA|TG, 727_C|T, 733_T|A, 736_G|A, 742_A|T, 757_C|T, 760_G|A, 763_T|C, 766_G|A,
778_T|C, 790_C|T, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 833_C|T, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|A, 871_T|C, 877_A|G, 883_G|A, 886_TC|CT, 890_A|G, 892_C|T, 898_C|T, 902_C|T,
904_T|A, 910_A|G, 931_C|T, 940_CC|TT, 943_A|G, 949_C|T, 961_T|C, 964_G|A, 967_C|T, 970_C|T, 973_A|G, 985_T|A, 991_T|A, 1030_T|C, 1036_T|C, 1042_T|C, 1045_CC|TT, 1051_G|A, 1054_A|G, 1066_C|T,
1072_T|G, 1090_T|C, 1102_C|A, 1108_A|G, 1111_G|A, 1117_A|T, 1127_A|G, 1138_G|A, 1140_TG|CA, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_T|C, 1183_T|C, 1189_C|T, 1204_T|C, 1207_A|T, 1210_G|A,
1214_C|T, 1216_CC|TT, 1219_A|G, 1222_T|C, 1228_G|A, 1234_A|G, 1237_G|A, 1240_CA|TC, 1243_T|C, 1246_G|C, 1249_C|T, 1252_G|A, 1255_C|A, 1261_T|C, 1267_T|C, 1279_C|G, 1282_T|C, 1294_A|G,
1300_G|A, 1306_G|A, 1309_C|T, 1321_C|T, 1333_T|C, 1339_C|T, 1342_A|G, 1345_C|T, 1351_TT|CC, 1366_T|C, 1378_T|C, 1390_C|T, 1393_A|G, 1399_AT|GC, 1408_A|T, 1411_G|A, 1414_C|T, 1423_A|G,
1426_T|C, 1433_A|G, 1435_C|T, 1438_C|T, 1453_G|A, 1471_C|T, 1474_C|T, 1480_A|G, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1504_A|G, 1507_T|C, 1511_C|T, 1516_A|G, 1522_G|A, 1525_G|A,
1528_A|G, 1531_T|C, 1534_G|A, 1544_G|A, 1552_T|C, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1603_C|T, 1609_C|T, 1618_G|A, 1621_A|T, 1642_G|T, 1660_T|C, 1669_C|G, 1675_T|C,
1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1701_G|A, 1705_AC|GT, 1723_G|A, 1732_CT|TC, 1738_A|G, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1782_A|G, 1785_A|G, 1792_T|G, 1798_A|G,
1801_A|G, 1807_T|G, 1810_A|G, 1813_T|C, 1816_T|C, 1819_T|A, 1822_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1879_C|T, 1887_T|C, 1900_C|T, 1915_C|A, 1926_TT|CC, 1946_T|C, 1951_A|G,
1963_C|T, 1969_T|C, 1978_A|G, 1990_T|C, 1993_T|C, 1996_A|G, 2000_G|T, 2003_A|G, 2008_T|C, 2020_G|A, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2041_C|T, 2044_A|C, 2047_C|T, 2053_T|G,
2080_A|C, 2083_T|C, 2086_T|C, 2089_A|G, 2098_C|T, 2101_T|C, 2104_C|A, 2112_GA|CG, 2116_A|G, 2119_T|C, 2122_A|T, 2128_C|G, 2131_T|C, 2146_A|G, 2152_A|C, 2164_A|G, 2188_A|G, 2193_TG|CA,
2197_A|G, 2201_C|T, 2209_C|T, 2215_A|G, 2218_CA|TG, 2221_C|T, 2224_C|A, 2230_T|C, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2266_G|A, 2275_T|A, 2278_T|C, 2280_C|T, 2290_C|T, 2305_GC|AT,
2308_A|G, 2314_C|T, 2322_AC|GT, 2350_G|A, 2353_A|C, 2376_CA|TG, 2380_A|G, 2383_C|T, 2395_C|T, 2408_T|C, 2413_A|T, 2419_G|C, 2432_T|C, 2437_T|C, 2446_T|G, 2455_T|C, 2464_C|T, 2467_C|A,
2488_G|A, 2494_G|A, 2497_C|T, 2500_A|G, 2503_T|C, 2506_TA|AG, 2515_A|C, 2518_T|C, 2521_A|G, 2524_C|T, 2527_T|A, 2533_C|T, 2548_C|T, 2566_T|C, 2569_T|A, 2575_G|A, 2581_A|C, 2593_A|G, 2599_T|C,
2602_T|C, 2605_A|G, 2620_CC|TT, 2626_T|C, 2632_T|C, 2635_C|T, 2641_T|G, 2644_G|A, 2650_G|A, 2659_A|G, 2668_A|G, 2687_T|C, 2695_A|G, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|A,
2722_G|C, 2725_G|A, 2728_T|C, 2731_A|C, 2734_G|A, 2737_TG|CA, 2740_T|C, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|T, 2776_G|T, 2782_TC|CT, 2788_G|A, 2794_T|C, 2803_T|C, 2824_C|T, 2827_C|T,
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3301_T|C, 3308_A|G, 3310_CA|TG, 3316_TG|CA, 3319_CAA|TGG, 3334_G|T, 3337_A|G, 3349_A|G, 3358_G|C, 3361_T|C, 3364_C|T, 3370_AG|GA, 3373_T|C, 3382_A|G, 3394_C|A, 3397_C|A, 3400_C|T, 3412_T|A,
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3643_A|G, 3646_A|G, 3649_T|C, 3652_C|A, 3655_T|G, 3658_TT|CC, 3662_C|T, 3667_A|G, 3670_CAC|TGT, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3715_A|G, 3718_C|T, 3727_T|C, 3733_G|C,
3739_T|C, 3745_C|T, 3748_T|C, 3751_A|G, 3757_A|G, 3760_A|G, 3763_G|A, 3778_T|C, 3782_C|T, 3784_C|G, 3790_C|A, 3793_A|G, 3820_G|A, 3824_C|T, 3826_A|G, 3832_A|T, 3841_G|A, 3847_T|A, 3851_T|C,
3856_T|C, 3860_G|A, 3868_C|A, 3871_C|G, 3883_T|C, 3886_A|G, 3895_T|G, 3898_T|C, 3901_C|T, 3908_C|T, 3931_T|C, 3940_A|G, 3944_AATA|GGCG, 3952_CT|TC, 3959_C|T, 3961_C|G, 3967_TC|GT, 3973_G|A,
3982_C|G, 3985_TA|AC, 4006_CG|AA, 4009_A|G, 4013_T|C, 4021_TG|CA, 4030_T|C, 4045_T|C, 4054_T|C, 4056_TC|CA, 4066_C|T, 4069_C|A, 4075_G|A, 4081_T|C, 4084_A|G, 4087_T|C, 4105_C|G, 4108_A|T,
4120_C|A, 4129_A|G, 4138_G|A, 4142_C|T, 4150_A|C, 4152_T|A, 4154_C|A, 4159_A|G, 4165_C|A, 4171_T|C, 4174_G|A, 4183_T|C, 4198_G|A, 4204_C|T, 4210_A|G, 4219_A|C, 4229_C|T, 4246_T|C, 4264_C|T,
4267_T|G, 4270_T|C, 4274_A|G, 4289_C|A, 4291_C|T, 4304_G|A, 4306_T|C, 4321_G|A, 4330_G|A, 4333_A|C, 4336_G|A, 4341_A|G, 4348_T|A, 4351_T|A, 4360_A|T, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T,
4399_C|T, 4411_A|T, 4423_A|G, 4429_G|A, 4436_C|T, 4438_G|A, 4441_T|C, 4453_A|G, 4456_G|C, 4465_C|T, 4469_G|A, 4474_G|C, 4483_G|A, 4489_C|T, 4498_G|A, 4504_CC|TA, 4519_T|A, 4522_TC|CA,
4531_C|T, 4540_G|T, 4544_C|T, 4547_T|C, 4549_T|C, 4557_G|A, 4576_G|A, 4579_T|C, 4583_T|C, 4585_G|C, 4594_T|C, 4598_A|G, 4600_T|A, 4605_AG|CA, 4609_CA|TG, 4612_C|T, 4618_A|G, 4627_TC|CT,
4630_G|A, 4639_G|A, 4651_A|C, 4660_A|G, 4663_C|T, 4666_CT|TC, 4669_G|A, 4678_C|T, 4684_A|G, 4711_G|C, 4720_A|G, 4732_C|G, 4738_A|G, 4741_A|T, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A,
4768_GT|AC, 4771_GA|AG, 4774_T|C, 4778_T|A, 4780_T|C, 4792_A|C, 4819_C|T, 4829_T|C, 4834_A|G, 4840_A|G, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|T, 4873_G|A, 4876_T|C, 4878_TT|CC, 4882_A|C,
4900_C|T, 4903_C|T, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4930_G|T, 4939_G|C, 4954_T|G, 4957_C|G, 4969_T|C, 4975_T|C, 4978_C|T, 4981_T|C, 4984_A|C, 4987_A|C, 4993_T|C, 4999_T|C, 5008_C|T,
5011_A|T, 5014_G|A, 5020_T|A, 5026_G|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5062_C|T, 5068_C|T, 5088_TG|CA, 5092_G|A, 5098_A|G, 5101_A|G, 5103_A|G, 5107_G|A, 5113_C|T, 5116_A|G, 5119_G|A,
5140_A|G, 5152_TG|AA, 5155_C|T, 5161_T|C, 5164_T|C, 5170_T|C, 5173_A|G, 5176_T|C, 5179_G|A, 5182_G|A, 5185_A|T, 5189_A|G, 5190_.|G, 5192_T|A, 5195_C|T, 5200, 5206_CT|TC, 5212_C|T, 5215_G|A,
5218_C|T, 5230_C|G, 5239_T|G, 5245_GT|TC, 5251_C|T, 5254_C|T, 5257_CA|TC, 5272_T|C, 5275_A|G, 5287_T|C, 5293_C|T, 5299_G|A, 5302_C|T, 5305_G|A, 5311_C|T, 5323_T|C, 5326_T|C, 5332_T|G,
5335_C|T, 5344_G|A, 5346_GA|AG, 5368_C|T, 5371_T|C, 5380_A|G, 5383_T|A, 5389_G|A, 5393_T|C, 5398_A|G, 5407_G|A, 5410_T|G, 5413_T|G, 5416_C|T, 5422_A|G, 5428_C|T, 5431_T|C, 5440_A|G, 5443_C|T,
5452_G|A, 5458_A|G, 5461_T|C, 5470_C|A, 5473_T|C, 5479_T|C, 5488_G|A, 5500_G|A, 5530_A|T, 5539_G|C, 5542_T|A, 5545_G|A, 5569_A|G, 5575_T|G, 5584_A|G, 5593_A|G, 5596_G|A, 5599_C|T, 5602_A|T,
5605_C|T, 5626_G|T, 5639_C|T, 5641_A|G, 5662_A|C, 5668_C|T, 5683_A|G, 5689_A|G, 5692_T|C, 5701_T|A, 5708_T|C, 5710_G|A, 5713_T|C, 5716_G|A, 5722_A|G, 5737_CC|GT, 5740_G|A, 5749_A|G, 5758_G|A,
5760_G|A, 5764_A|G, 5773_G|A, 5776_A|T, 5779_G|A, 5797_T|C, 5800_A|C, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5872_T|C, 5875_G|A, 5893_A|G, 5914_A|G, 5917_G|A, 5926_T|G, 5929_C|T, 5932_C|A,
5935_A|C, 5938_C|T, 5941_T|C, 5947_T|C, 5953_G|A, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|A, 5980_C|T, 5983_A|G, 5989_A|G, 5992_C|T, 5998_C|T, 6001_C|T, 6004_T|C, 6007_T|C, 6013_T|A, 6023_A|G,
6025_T|C, 6031_C|T, 6034_C|T, 6037_C|T, 6047_T|C, 6052_G|A, 6067_G|A, 6100_C|T, 6113_G|A, 6115_T|A, 6118_A|G, 6121_A|G, 6124_T|A, 6127_A|G, 6136_T|C, 6142_T|A, 6145_T|C, 6154_AC|GT, 6157_G|A,
6160_G|A, 6169_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6229_A|G, 6244_TT|AC, 6259_T|C, 6262_T|A, 6271_T|C, 6280_C|T, 6283_T|A, 6292_T|C, 6295_G|A, 6310_C|T,
6316_A|G, 6334_T|C, 6346_A|G, 6351_A|G, 6356_C|T, 6361_C|G, 6367_G|A, 6373_T|C, 6379_A|G, 6385_G|T, 6391_T|C, 6400_T|C, 6403_G|T, 6406_GT|TG, 6409_T|C, 6415_T|C, 6418_T|A, 6427_T|C, 6430_A|G,
6433_T|C, 6439_G|A, 6442_A|G, 6445_T|G, 6448_T|A, 6451_A|G, 6463_G|A, 6478_T|A, 6490_T|C, 6493_A|G, 6508_A|G, 6514_T|C, 6517_C|T, 6523_T|C, 6530_C|T, 6532_CC|GA, 6547_C|T, 6550_T|C, 6569_C|T,
6571_A|G, 6595_A|G, 6611_A|G, 6613_A|T, 6616_G|A, 6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T, 6664_A|G, 6667_C|A, 6673_T|C, 6676_A|G, 6682_T|C, 6688_G|A, 6703_C|T, 6706_C|T, 6709_T|C, 6715_T|C,
6724_C|T, 6730_A|G, 6733_C|T, 6745_T|C, 6757_TG|CA, 6766_C|G, 6772_C|T, 6781_G|A, 6790_T|G, 6793_GA|AG, 6796_C|T, 6799_C|A, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G,
6829_C|T, 6835_A|G, 6841_A|T, 6844_C|T, 6847_C|T, 6850_T|C, 6859_C|T, 6863_A|G, 6874_A|C, 6876_C|T, 6889_C|T, 6892_G|A, 6895_A|G, 6902_C|T, 6907_G|A, 6910_A|G, 6916_A|G, 6919_G|A, 6925_C|T,
6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6952_T|C, 6955_TG|CA, 6958_TT|CG, 6969_G|A, 6976_G|A, 6986_C|T, 6988_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|G, 7030_A|G, 7046_T|C,
7054_C|T, 7063_A|G, 7066_C|T, 7069_A|G, 7079_C|T, 7084_T|C, 7096_A|T, 7105_A|G, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|T, 7138_A|C, 7141_A|G, 7156_T|C, 7171_G|C, 7174_G|A, 7178_G|A, 7180_C|T,
7186_C|A, 7211_C|T, 7216_C|T, 7225_A|T, 7228_G|A, 7243_C|T, 7247_T|A, 7249_T|C, 7255_T|C, 7258_A|G, 7261_T|C, 7270_A|G, 7279_G|A, 7286_C|T, 7288_T|G, 7291_A|C, 7297_A|G, 7300_G|A, 7312_C|T,
7318_CG|TA, 7321_G|A, 7324_C|T, 7327_T|A, 7339_G|A, 7366_T|C, 7369_T|G, 7378_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7408_T|C, 7412_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7426_CC|TT, 7429_A|G,
7432_T|C, 7450_A|G, 7453_G|C, 7456_C|T, 7465_G|A, 7468_T|C, 7480_CC|AT, 7483_A|G, 7492_T|A, 7495_CT|TC, 7498_A|G, 7501_G|A, 7504_G|A, 7516_A|G, 7519_C|T, 7528_T|C, 7531_T|G, 7552_C|G,
7561_A|G, 7571_A|C, 7576_G|T, 7580_C|T, 7582_C|T, 7597_A|T, 7612_A|C, 7630_A|G, 7634_C|A, 7642_C|A, 7645_G|A, 7651_A|G, 7660_G|A, 7666_A|G, 7675_G|A, 7687_T|C, 7691_T|C, 7696_C|T, 7701_G|A,
7712_T|C, 7717_T|C, 7726_C|A, 7732_T|C, 7744_T|C, 7750_T|A, 7753_G|A, 7762_G|A, 7765_TT|CC, 7771_C|T, 7792_G|A, 7798_G|T, 7804_C|G, 7807_G|A, 7813_C|T, 7816_A|C, 7819_G|A, 7822_A|G, 7825_G|A,
7831_C|T, 7837_G|A, 7851_A|G, 7855_G|T, 7861_T|C, 7869_T|C, 7876_G|A, 7879_G|A, 7882_T|C, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7906_C|T, 7915_G|A, 7918_A|G, 7921_G|A, 7924_A|G, 7939_A|G,
7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7969_G|A, 7990_T|C, 8011_C|T, 8014_C|T, 8023_A|G, 8041_A|G, 8044_A|G, 8053_A|G, 8065_T|C, 8071_T|C, 8074_C|T, 8089_AT|TC, 8092_G|A, 8095_A|G,
8098_G|A, 8101_C|G, 8104_A|C, 8120_G|A, 8123_A|C, 8131_T|C, 8134_T|C, 8137_T|C, 8140_A|T, 8143_A|G, 8152_G|T, 8154_C|G, 8158_T|C, 8161_G|T, 8167_C|G, 8169_A|G, 8173_C|T, 8188_A|G, 8209_T|G,
8212_C|A, 8215_G|A, 8218_AC|GT, 8224_A|G, 8245_C|T, 8248_A|G, 8251_A|G, 8254_G|C, 8260_G|A, 8266_T|C, 8269_C|T, 8275_G|A, 8278_T|C, 8281_C|T, 8284_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8302_G|A,
8317_C|T, 8320_TG|CA, 8329_T|C, 8341_A|G, 8344_A|G, 8354_C|T, 8356_G|A, 8362_G|A, 8374_T|C, 8380_T|A, 8383_A|C, 8392_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8440_A|G, 8446_G|A, 8449_A|G, 8452_C|A,
8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8500_G|A, 8504_ATGA|GCAG, 8510_T|A, 8512_T|C, 8518_TT|CC, 8524_C|T, 8533_C|T, 8539_C|T, 8551_C|T, 8554_C|T, 8574_A|G,
8584_A|G, 8587_T|C, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|C, 8608_T|A, 8611_T|G, 8614_T|C, 8617_A|G, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|T, 8671_T|A, 8680_C|T, 8692_G|A, 8707_A|G,
8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8770_C|T, 8773_C|T, 8782_G|A, 8792_C|T, 8797_C|T, 8800_A|G, 8808_A|G, 8815_A|G, 8824_A|G, 8830_A|G, 8833_A|G, 8839_T|A, 8851_A|C, 8854_T|C, 8874_A|T,
8923_C|T, 8929_G|A, 8938_AC|GT, 8954_A|C, 8957_AA|CG, 8962_G|A, 8965_C|T, 8968_A|G, 8971_A|G, 8974_C|T, 8986_T|C, 9019_G|A, 9022_G|A, 9034_T|C, 9040_A|G, 9043_A|G, 9046_G|A, 9052_C|T,
9055_T|C, 9061_A|C, 9067_T|C, 9074_C|T, 9082_G|C, 9085_G|A, 9100_G|A, 9113_C|T, 9115_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9177_A|C, 9179_T|C,
9187_A|C, 9190_T|C, 9212_A|C, 9214_G|A, 9217_T|A, 9232_C|T, 9235_G|A, 9244_C|A, 9259_G|A, 9268_A|G, 9274_A|G, 9277_C|T, 9280_T|G, 9299_T|C, 9313_C|T, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_A|G,
9335_CAA|TTG, 9343_G|A, 9361_G|A, 9367_A|G, 9379_G|C, 9382_G|A, 9391_C|A, 9397_A|T, 9406_C|A, 9424_T|C, 9427_A|G, 9430_A|G, 9439_A|G, 9445_C|T, 9467_C|T, 9485_T|C, 9490_A|G, 9496_AT|GC,
9505_A|G, 9527_A|G, 9529_A|T, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|TG, 9562_A|G, 9571_C|A, 9573_GG|AA, 9577_G|C, 9590_A|G, 9598_C|T, 9601_A|G, 9607_C|T,
9610_AC|GT, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|C, 9658_C|T, 9670_C|T, 9679_C|T, 9685_C|T, 9691_C|T, 9709_TA|GC, 9712_A|C, 9718_C|T, 9745_G|A, 9754_T|C, 9769_C|G, 9775_T|C, 9790_T|C,
9796_A|G, 9799_G|A, 9817_G|A, 9820_T|C, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_C|A, 9859_A|G, 9865_G|A, 9868_G|T, 9880_C|T, 9883_C|T, 9898_A|G, 9901_A|G, 9904_T|A, 9910_C|A, 9916_A|G,
9919_C|T, 9938_C|T, 9946_T|C, 9949_T|C, 9955_A|G, 9961_C|T, 9970_A|G, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|G, 10018_A|G, 10024_C|T, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G,
10051_G|A, 10063_C|T, 10066_G|A, 10096_A|G, 10103_AC|GT, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_TC|CT, 10165_A|G, 10174_A|G, 10177_A|G,
10186_G|T, 10189_C|T, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10294_C|T,
10297_A|G, 10309_C|T, 10312_G|A, 10336_A|G, 10338_TG|CC, 10342_T|C, 10348_T|C, 10351_C|T, 10355_A|G, 10358_A|G, 10365_AA|TG, 10369_10377, 10383_10385, 10391_10394, 10396_10398, 10403_10405,
10407, 10409_10411, 10412_C|G, 10416_10417, 10418_C|T, 10421_10429, 10434_10442, 10445_10446, 10450, 10451_C|T, 10455_10460, 10462, 10465_10475, 10522, 10524_G|A, 10526_C|T, 10533_A|G,
10535_T|A, 10550_C|T, 10554_CAC|TGT, 10558_A|G, 10562_T|C, 10605_A|C, 10607_C|T, 10620_A|C, 10635_G|A, 10639_C|T, 10647_C|T, 10658_.|C, 10659_AG|CA, 10740_A|G, 10742_T|A, 10847_C|A
Case 3 (A.1): PQ186350.1
| Target: 835 samples | Number of changes: 1472 | |
| BC: A.1 + A.1 | BC BR: 1455-1456 | BC BR coord: 10527 - 10528 |
| Direction L1: >> | Initial region span: 1-1424,1469-1472 | Gap history (edge excluded): 1424-1469 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 8.03e-03 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1424 |
183.772526 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1469 |
1.187284 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 80_A|G, 117_AC|TA, 130_T|C, 166_A|T, 171_G|A, 197_A|G, 226_C|T, 247_T|C, 262_C|T, 280_CA|TG, 284_T|C, 294_AA|GG, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_G|A, 320_T|C, 327_A|G,
346_A|G, 349_C|A, 361_A|G, 363_G|A, 367_A|G, 385_C|G, 388_T|C, 400_A|T, 409_A|G, 421_T|A, 425_C|T, 430_T|A, 433_TC|CT, 442_G|T, 448_C|T, 454_T|C, 467_T|C, 475_G|T, 488_T|C, 496_G|C, 499_A|G,
501_A|G, 514_CC|TT, 517_A|G, 523_G|C, 535_C|T, 538_C|T, 547_A|C, 556_G|T, 568_C|T, 577_A|C, 584_T|C, 589_A|G, 596_T|A, 598_C|T, 604_C|T, 607_A|G, 610_C|T, 613_A|C, 628_T|C, 634_T|C, 649_G|A,
652_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 676_C|T, 682_G|A, 691_C|T, 697_A|G, 700_C|T, 703_A|T, 709_T|C, 718_C|T, 724_725, 727_728, 732_736, 747_.|GTCTAGAAG, 757_C|T, 760_G|A, 763_T|C,
766_G|A, 790_C|T, 802_A|G, 826_A|G, 829_G|A, 833_C|T, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 877_A|G, 883_G|A, 886, 890_G|T, 891_.|G, 892_C|T, 898_C|T, 901_CC|TT, 904_T|G,
910_A|G, 931_C|T, 940_CC|TT, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 967_C|T, 970_C|T, 973_A|G, 985_T|A, 991_T|A, 1042_T|C, 1045_CC|TT, 1051_G|A, 1054_A|G, 1066_C|T, 1072_T|G, 1090_T|C, 1102_C|A,
1108_A|G, 1111_G|A, 1117_A|T, 1127_A|G, 1138_G|A, 1140_TG|CA, 1158_A|G, 1165_TC|CT, 1168_C|G, 1183_T|C, 1189_C|T, 1195_C|T, 1204_T|C, 1207_A|T, 1210_G|A, 1216_CC|TT, 1219_A|G, 1228_G|A,
1234_A|G, 1237_G|A, 1240_CA|TC, 1243_T|C, 1246_G|C, 1249_C|T, 1252_G|A, 1255_C|A, 1261_T|C, 1267_T|C, 1279_C|G, 1282_T|C, 1285_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1333_T|C, 1339_C|T,
1342_A|G, 1351_TT|CC, 1366_T|C, 1378_T|C, 1390_C|T, 1393_A|G, 1399_AT|GC, 1408_A|T, 1411_G|A, 1423_A|G, 1426_T|C, 1433_A|G, 1435_C|T, 1438_C|T, 1453_G|A, 1471_C|T, 1474_C|T, 1480_A|G,
1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1504_A|G, 1507_T|C, 1516_A|G, 1522_G|A, 1525_G|A, 1528_A|G, 1531_T|C, 1534_G|A, 1544_G|A, 1546_T|C, 1552_T|C, 1558_C|T, 1561_T|A, 1570_A|G,
1572_C|A, 1585_A|T, 1591_C|T, 1603_C|T, 1606_G|A, 1609_C|T, 1618_G|A, 1621_A|T, 1642_G|T, 1660_T|C, 1669_C|G, 1675_T|C, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A,
1723_G|A, 1732_CT|TC, 1738_A|G, 1747_T|C, 1753_C|T, 1760_A|C, 1765_T|C, 1782_A|G, 1785_A|G, 1792_T|G, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1813_T|C, 1816_T|C, 1819_T|A, 1822_C|T, 1855_G|A,
1858_A|G, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1879_C|T, 1887_T|C, 1900_C|T, 1909_C|T, 1915_C|A, 1926_TT|CC, 1946_T|C, 1969_T|C, 1978_A|G, 1993_T|C, 2000_G|T, 2003_A|G, 2008_T|C,
2020_G|A, 2023_T|A, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2047_C|T, 2053_T|G, 2059_A|G, 2063_C|T, 2080_A|T, 2083_T|C, 2086_T|C, 2089_A|G, 2098_C|T, 2101_T|C, 2104_C|A, 2112_G|C,
2116_A|G, 2119_T|C, 2122_A|T, 2128_C|G, 2131_T|C, 2146_A|G, 2152_A|C, 2164_A|G, 2188_A|G, 2193_T|C, 2197_A|G, 2209_C|T, 2215_A|G, 2218_CA|TG, 2221_C|T, 2224_C|T, 2230_T|C, 2239_C|T, 2248_G|A,
2251_C|T, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2269_A|G, 2275_T|A, 2278_T|C, 2280_C|T, 2305_G|A, 2308_A|G, 2314_C|T, 2318_T|C, 2322_AC|GT, 2350_G|A, 2353_A|C, 2376_CA|TG, 2380_A|G,
2395_C|T, 2408_T|C, 2413_A|T, 2418_TG|CC, 2432_T|C, 2437_T|C, 2446_T|G, 2452_G|A, 2455_T|C, 2464_C|T, 2467_C|A, 2488_G|A, 2494_G|A, 2497_C|T, 2500_A|G, 2503_T|C, 2506_TA|AG, 2515_A|C,
2518_T|C, 2521_A|G, 2524_C|T, 2527_T|G, 2533_C|T, 2548_C|T, 2566_T|C, 2569_T|A, 2575_G|A, 2581_A|C, 2593_A|G, 2599_T|C, 2602_T|C, 2605_A|G, 2620_CC|TT, 2626_T|C, 2632_T|C, 2635_C|T, 2641_T|G,
2644_G|A, 2650_G|A, 2659_A|G, 2668_A|G, 2677_C|T, 2686_TT|CC, 2698_C|T, 2701_G|A, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_T|C, 2731_A|C, 2734_G|A,
2737_TG|CA, 2740_T|C, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|T, 2776_G|T, 2782_TC|CT, 2788_G|A, 2794_T|C, 2803_T|C, 2827_C|T, 2833_G|A, 2836_G|A, 2860_T|C, 2863_A|G, 2878_A|G, 2887_T|C,
2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2947_A|T, 2950_C|A, 2962_C|T, 2983_A|G, 2986_C|T, 3007_T|G, 3013_G|A, 3019_C|T, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3064_T|C, 3070_A|G,
3073_A|G, 3079_G|A, 3091_C|A, 3098_T|C, 3104_G|A, 3107_T|C, 3109_A|G, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3178_C|T, 3187_A|G, 3193_C|T, 3205_T|G, 3211_T|C, 3217_T|C, 3220_T|C,
3226_T|A, 3238_T|C, 3244_G|A, 3247_C|T, 3250_A|G, 3271_A|G, 3289_T|C, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|TGG, 3328_T|C, 3334_G|T, 3337_A|G, 3349_A|G,
3358_G|C, 3364_C|T, 3370_AG|GA, 3382_A|G, 3394_C|A, 3397_C|A, 3400_C|T, 3412_T|A, 3421_C|T, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3457_T|C, 3460_G|A, 3469_A|G, 3472_G|A, 3478_A|T, 3480_G|A,
3484_T|C, 3490_G|T, 3496_C|A, 3502_T|G, 3511_A|G, 3514_AA|GG, 3517_A|C, 3523_T|A, 3535_TT|GC, 3566_G|T, 3569_C|T, 3571_A|G, 3573_G|A, 3577_A|G, 3589_A|C, 3598_G|A, 3610_AG|CA, 3620_T|C,
3622_G|A, 3628_A|C, 3632_C|T, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3649_T|C, 3652_CC|GT, 3655_T|G, 3658_T|C, 3667_A|G, 3670_CAC|TGT, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T,
3715_A|G, 3718_C|T, 3727_T|C, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3751_A|G, 3757_A|G, 3760_A|G, 3763_G|A, 3769_C|T, 3782_C|T, 3784_C|G, 3790_C|A, 3793_A|G, 3814_T|A, 3820_G|A, 3826_A|G,
3832_A|C, 3835_C|T, 3847_T|A, 3856_T|C, 3860_G|A, 3868_C|A, 3871_C|G, 3883_T|C, 3886_A|G, 3895_T|G, 3898_T|C, 3901_C|T, 3908_C|T, 3928_T|C, 3931_T|C, 3934_G|A, 3940_A|G, 3945_ATA|GCG,
3949_C|A, 3953_T|C, 3959_C|T, 3961_C|G, 3967_T|G, 3982_C|G, 3985_T|A, 4006_CG|AA, 4009_A|G, 4013_T|C, 4018_T|C, 4021_TG|CA, 4030_T|C, 4036_A|C, 4045_T|C, 4054_T|C, 4056_TC|CA, 4066_C|T,
4075_G|A, 4081_T|C, 4087_T|C, 4105_C|G, 4108_A|T, 4120_C|A, 4129_A|G, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4204_C|T, 4210_A|G, 4219_A|C, 4229_C|T,
4231_G|A, 4246_T|C, 4258_G|A, 4264_C|T, 4267_T|G, 4270_T|C, 4274_A|G, 4289_C|A, 4291_C|T, 4304_G|A, 4306_T|C, 4321_G|A, 4330_G|A, 4333_A|C, 4336_G|A, 4341_A|G, 4348_T|A, 4351_T|A, 4360_A|T,
4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4411_A|T, 4423_A|G, 4429_G|A, 4435_G|A, 4438_G|A, 4441_T|C, 4444_T|C, 4447_A|G, 4450_G|A, 4453_A|G, 4456_G|T, 4465_C|T, 4469_G|A,
4474_G|C, 4489_C|T, 4495_T|C, 4498_G|A, 4501_T|C, 4504_CC|TA, 4519_T|G, 4522_TC|CA, 4531_C|T, 4540_G|T, 4544_C|T, 4547_T|C, 4549_T|C, 4557_G|A, 4561_A|G, 4576_G|A, 4579_T|C, 4583_T|C,
4585_G|C, 4594_T|C, 4597_CA|TG, 4600_T|A, 4605_AG|CA, 4609_CA|TG, 4612_C|T, 4618_A|G, 4627_TC|CT, 4630_G|A, 4639_G|A, 4651_A|T, 4660_A|G, 4663_C|T, 4666_CT|TC, 4669_G|A, 4678_C|T, 4681_G|A,
4684_A|G, 4711_G|C, 4720_A|G, 4732_C|G, 4741_A|T, 4744_T|C, 4747_C|T, 4753_C|T, 4756_G|A, 4769_T|C, 4771_GA|AG, 4774_T|C, 4778_T|A, 4780_T|C, 4792_A|C, 4795_G|A, 4813_T|C, 4819_C|T, 4829_T|C,
4840_A|G, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|T, 4873_G|A, 4876_T|C, 4878_TT|CC, 4882_A|C, 4891_C|T, 4900_C|T, 4903_C|T, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4924_C|T, 4927_A|G, 4930_G|T,
4939_G|C, 4954_T|G, 4957_C|G, 4969_T|C, 4975_T|C, 4981_T|C, 4987_A|C, 4993_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5014_G|A, 5020_T|A, 5026_G|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5062_C|T,
5068_C|T, 5080_G|A, 5088_TG|CA, 5092_G|A, 5098_A|G, 5101_A|G, 5103_A|G, 5107_G|A, 5113_C|T, 5116_A|G, 5119_G|A, 5140_A|G, 5152_TG|AA, 5155_C|T, 5161_T|C, 5164_T|C, 5173_A|G, 5176_T|C,
5179_G|A, 5182_G|A, 5185_A|T, 5188_A|G, 5191_T|C, 5194_C|T, 5197_C|T, 5200_A|T, 5206_CT|TC, 5212_C|T, 5215_G|A, 5218_C|T, 5230_CT|GC, 5239_T|G, 5245_GT|TC, 5251_C|T, 5257_C|T, 5269_T|C,
5272_T|C, 5275_A|G, 5287_T|C, 5293_C|T, 5299_G|A, 5302_C|T, 5305_G|A, 5308_A|G, 5311_C|T, 5323_T|C, 5326_T|C, 5332_T|G, 5335_C|T, 5344_G|A, 5346_GA|AG, 5368_C|T, 5371_T|C, 5374_C|T, 5380_A|G,
5383_T|A, 5389_G|A, 5393_T|C, 5398_A|G, 5407_G|A, 5410_T|G, 5413_T|G, 5416_C|T, 5422_A|G, 5431_T|C, 5440_A|G, 5443_C|T, 5452_G|A, 5458_A|G, 5461_T|C, 5470_C|A, 5479_T|C, 5488_G|A, 5491_C|T,
5500_G|A, 5530_A|T, 5539_G|T, 5542_T|A, 5545_G|A, 5575_T|G, 5584_A|G, 5593_A|G, 5596_G|A, 5602_A|T, 5605_C|T, 5623_A|G, 5626_G|T, 5639_C|T, 5641_A|G, 5662_A|C, 5668_C|T, 5683_A|G, 5689_A|G,
5692_T|C, 5701_T|A, 5707_TT|CC, 5710_G|A, 5713_T|C, 5716_G|A, 5722_A|G, 5737_CC|GT, 5740_G|A, 5749_A|G, 5758_G|A, 5760_G|A, 5764_A|G, 5773_G|A, 5776_A|T, 5779_G|A, 5788_A|G, 5797_T|C,
5800_A|C, 5806_C|T, 5833_C|T, 5836_T|C, 5839_C|T, 5846_C|A, 5857_T|C, 5872_T|C, 5875_G|A, 5893_A|G, 5914_A|G, 5917_G|A, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5953_G|A,
5968_G|A, 5971_A|G, 5974_T|C, 5977_C|A, 5980_C|T, 5983_A|G, 5989_A|G, 5992_C|T, 5998_C|T, 6001_C|T, 6004_T|C, 6013_T|A, 6023_A|G, 6025_T|C, 6034_C|T, 6037_C|T, 6047_T|C, 6052_G|A, 6067_G|A,
6113_G|A, 6115_T|A, 6118_A|G, 6121_A|G, 6124_T|A, 6127_A|G, 6136_T|C, 6142_T|G, 6145_T|C, 6154_AC|GT, 6157_G|A, 6160_G|A, 6169_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6199_T|C, 6211_C|T, 6220_T|C,
6223_G|A, 6229_A|G, 6244_TT|AC, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6280_C|T, 6283_T|A, 6286_G|A, 6292_T|C, 6310_C|T, 6316_A|G, 6322_G|A, 6328_C|T, 6334_T|C, 6346_A|G, 6351_A|G, 6361_C|G,
6367_G|A, 6373_T|C, 6379_A|G, 6385_G|T, 6391_T|C, 6400_T|C, 6403_G|T, 6406_GT|TG, 6409_T|C, 6415_T|C, 6418_T|A, 6427_T|C, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6445_T|G, 6448_T|A, 6451_A|G,
6457_A|G, 6478_T|A, 6490_T|C, 6493_A|G, 6499_T|C, 6508_A|G, 6514_T|C, 6517_C|T, 6523_T|C, 6529_CC|TT, 6532_CC|GA, 6547_C|T, 6550_T|C, 6571_A|G, 6595_A|G, 6611_A|G, 6613_A|T, 6622_AC|GT,
6625_A|G, 6634_G|T, 6643_C|T, 6667_C|A, 6673_T|C, 6682_T|C, 6688_G|A, 6703_C|T, 6706_C|T, 6709_T|C, 6715_T|C, 6724_C|T, 6730_A|G, 6733_C|T, 6736_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|G,
6769_A|C, 6772_C|T, 6790_T|G, 6794_A|G, 6796_C|T, 6799_C|A, 6802_G|A, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6835_A|G, 6841_A|T, 6844_C|T, 6850_T|C, 6859_C|T, 6871_T|C,
6874_A|C, 6876_C|T, 6883_A|G, 6889_C|T, 6892_G|A, 6895_A|G, 6902_C|T, 6907_G|A, 6910_A|G, 6916_A|G, 6919_G|A, 6925_C|T, 6934_G|A, 6940_C|T, 6943_A|G, 6952_T|C, 6955_TG|CA, 6958_TT|CG,
6969_GT|AC, 6976_G|A, 6988_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|G, 7030_A|G, 7036_C|T, 7046_T|C, 7054_C|T, 7063_A|G, 7066_C|T, 7069_A|G, 7079_C|T, 7081_G|A, 7084_T|C, 7096_A|T,
7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|T, 7138_A|C, 7141_A|G, 7156_T|C, 7171_G|C, 7174_G|A, 7177_GG|AA, 7180_C|T, 7211_C|T, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T, 7243_C|T, 7247_T|A,
7249_T|C, 7255_T|C, 7258_A|G, 7261_T|C, 7270_A|G, 7273_G|A, 7279_G|A, 7286_C|T, 7288_T|G, 7297_A|G, 7300_G|A, 7306_C|T, 7312_C|T, 7318_CG|TA, 7321_G|A, 7324_C|T, 7327_T|A, 7339_G|A, 7369_T|G,
7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7408_T|C, 7412_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7438_T|A, 7450_A|G, 7453_G|C, 7456_C|T, 7465_G|A, 7468_T|C,
7480_CC|AT, 7483_A|G, 7492_T|A, 7495_C|T, 7498_A|G, 7501_G|A, 7504_G|A, 7516_A|G, 7519_C|T, 7528_T|C, 7531_T|A, 7552_C|G, 7561_A|G, 7564_A|G, 7571_A|C, 7580_C|T, 7582_C|T, 7597_A|T, 7612_A|C,
7627_T|C, 7630_A|G, 7634_C|A, 7642_C|A, 7645_G|A, 7651_A|G, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7701_G|A, 7712_T|C, 7717_T|C, 7726_C|A, 7732_T|C, 7744_T|C, 7750_T|A, 7753_G|A,
7762_G|A, 7765_T|C, 7771_C|T, 7789_C|T, 7798_G|T, 7804_C|G, 7807_G|A, 7813_C|T, 7816_A|T, 7819_G|A, 7822_A|G, 7825_G|A, 7831_C|T, 7837_G|A, 7855_G|A, 7861_T|C, 7869_T|C, 7876_G|A, 7879_G|A,
7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7906_C|T, 7915_G|A, 7918_A|G, 7921_G|A, 7924_A|G, 7939_A|G, 7942_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7969_G|A, 7990_T|C, 8011_C|T, 8014_C|T,
8023_A|G, 8041_A|G, 8044_A|G, 8053_A|G, 8065_T|C, 8071_T|C, 8074_C|T, 8087_A|G, 8088_.|CTC, 8096_T|G, 8099_8101, 8104_A|C, 8120_G|A, 8123_A|C, 8134_T|C, 8137_T|C, 8140_A|T, 8143_A|G,
8145_A|G, 8152_G|T, 8154_C|G, 8158_T|C, 8161_G|T, 8167_C|G, 8169_A|G, 8173_C|T, 8188_A|G, 8209_T|G, 8212_C|A, 8215_G|A, 8218_AC|GT, 8224_A|G, 8245_C|T, 8248_A|G, 8251_A|G, 8254_G|C, 8260_G|A,
8266_T|C, 8269_C|T, 8275_G|A, 8278_T|C, 8281_C|T, 8284_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8302_G|A, 8305_T|C, 8317_C|T, 8320_TG|CA, 8329_T|C, 8341_A|G, 8344_A|G, 8354_C|T, 8362_GA|AC,
8374_T|C, 8380_T|A, 8383_A|C, 8392_C|T, 8422_G|A, 8434_T|G, 8440_A|G, 8446_G|A, 8449_A|G, 8452_C|A, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|C, 8476_A|G, 8485_G|A, 8488_G|A, 8505_TGA|CAG,
8510_T|A, 8518_TT|CC, 8551_C|T, 8554_C|T, 8557_T|C, 8574_A|G, 8584_A|G, 8587_T|C, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|C, 8608_T|A, 8611_T|G, 8614_T|C, 8617_A|G, 8629_T|C, 8632_A|C, 8638_C|T,
8650_G|A, 8656_A|T, 8671_T|A, 8680_C|T, 8692_G|A, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8758_C|T, 8764_A|G, 8770_C|T, 8773_C|T, 8782_G|A, 8785_C|T, 8800_A|G, 8815_A|G, 8824_A|G,
8830_A|G, 8833_A|G, 8836_T|C, 8839_T|A, 8851_A|C, 8854_T|C, 8863_C|T, 8866_T|C, 8874_A|T, 8923_C|T, 8926_A|G, 8929_G|A, 8939_C|T, 8954_A|C, 8957_AA|CG, 8962_G|A, 8968_A|G, 8971_A|G, 8974_C|T,
9019_G|A, 9022_G|A, 9034_T|C, 9037_G|A, 9040_A|G, 9043_A|G, 9046_G|A, 9052_C|T, 9055_T|C, 9061_A|C, 9067_T|C, 9074_C|T, 9082_G|C, 9085_G|A, 9100_G|A, 9113_C|T, 9115_G|A, 9127_T|C, 9133_T|A,
9136_C|T, 9142_A|G, 9151_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9175_A|G, 9179_T|C, 9187_A|C, 9190_T|C, 9212_A|C, 9214_G|A, 9217_T|A, 9232_C|T, 9235_G|T, 9244_C|A, 9259_G|A, 9274_A|G,
9277_C|T, 9280_T|G, 9313_C|T, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_A|G, 9335_CAA|TTG, 9343_G|A, 9361_G|A, 9367_A|G, 9379_G|C, 9382_G|A, 9391_C|A, 9397_A|T, 9400_G|A, 9403_A|G, 9406_C|A,
9424_T|C, 9427_A|G, 9430_A|G, 9439_A|G, 9445_C|T, 9467_C|T, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9505_A|G, 9527_A|G, 9529_A|G, 9532_T|C, 9538_A|G, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|TG,
9562_A|G, 9571_C|A, 9573_GG|AA, 9577_G|T, 9590_A|G, 9598_C|T, 9601_A|C, 9610_AC|GT, 9625_G|A, 9637_C|T, 9646_G|C, 9652_G|C, 9658_C|T, 9670_C|T, 9679_C|T, 9685_C|T, 9691_C|T, 9709_TA|GC,
9712_A|C, 9745_G|A, 9754_T|C, 9769_C|G, 9772_C|T, 9775_T|C, 9790_T|C, 9796_A|G, 9817_G|A, 9820_T|C, 9835_A|G, 9838_A|C, 9841_G|A, 9844_C|T, 9850_C|A, 9859_A|G, 9865_G|A, 9868_G|T, 9880_C|T,
9898_A|G, 9901_A|G, 9904_T|A, 9910_C|A, 9916_A|G, 9919_C|T, 9938_C|T, 9946_T|C, 9955_A|G, 9970_A|G, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|G, 10018_A|G, 10024_C|T, 10027_A|C,
10030_A|G, 10036_GA|TG, 10042_T|C, 10051_G|A, 10066_G|A, 10096_A|G, 10103_AC|GT, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10159_T|C, 10162_T|C,
10174_A|G, 10186_G|T, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10240_TT|CC, 10243_A|G, 10246_C|G, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_GC|AT, 10273_AC|GA, 10276_G|A,
10294_C|T, 10297_A|G, 10312_G|A, 10336_A|G, 10338_TG|CC, 10342_T|C, 10348_T|C, 10351_C|T, 10355_A|G, 10358_A|G, 10363_C|T, 10365_A|T, 10369_10377, 10381_10382, 10385, 10391_10397,
10403_10405, 10407, 10409_10411, 10412_C|G, 10416_10417, 10418_C|T, 10421_10429, 10434_10442, 10444_10445, 10450, 10451_C|T, 10455_10460, 10462, 10465_10475, 10522, 10524_G|A, 10526_C|T,
10528_G|A, 10533_A|G, 10535_T|A, 10554_CAC|TGT, 10558_A|G, 10562_T|C, 10605_A|C, 10607_C|T, 10620_A|T, 10635_G|A, 10639_C|T, 10647_C|T, 10658_.|C, 10659_AG|CA, 10681_C|T, 10703_C|T,
10740_A|G, 10847_C|A
Case 3 (A.1): PQ186354.1
| Target: 835 samples | Number of changes: 1460 | |
| BC: A.1 + A.1 | BC BR: 1439-1440 | BC BR coord: 10468 - 10469 |
| Direction L1: >> | Initial region span: 1-1416,1456-1460 | Gap history (edge excluded): 1416-1456 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 3.30e-13 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1416 |
186.632879 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1456 |
1.211665 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 80_A|G, 117_AC|TA, 130_T|C, 171_G|A, 177_TT|CC, 247_T|C, 280_CA|TG, 284_T|C, 294_AA|GG, 301_C|T, 304_A|T, 307_C|T, 310_CC|TT, 313_A|G, 318_G|A, 320_T|C, 327_AA|GG, 346_A|G, 349_C|A,
352_G|A, 361_A|G, 363_G|A, 367_A|G, 385_C|G, 400_A|C, 409_A|G, 421_T|A, 430_T|A, 433_TC|CT, 442_G|T, 448_C|T, 451_A|G, 454_TT|CC, 466_GT|AC, 475_G|T, 488_T|C, 490_G|A, 496_G|C, 499_A|G,
501_A|G, 515_C|T, 517_A|G, 523_G|C, 538_C|T, 547_A|C, 556_G|T, 568_C|T, 577_A|C, 584_T|C, 589_A|G, 596_T|A, 598_C|T, 604_C|T, 607_A|G, 610_C|T, 613_A|C, 622_C|T, 628_T|C, 634_T|C, 637_C|T,
649_G|A, 655_A|T, 664_T|A, 670_C|T, 676_C|T, 682_G|A, 691_C|T, 697_A|G, 700_C|T, 703_A|T, 709_T|C, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|T, 754_T|C, 763_T|C, 766_G|A, 775_C|T, 799_A|G,
802_A|G, 823_T|C, 826_A|G, 829_G|A, 833_C|T, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|A, 874_T|C, 883_G|A, 886_T|C, 889_GA|AG, 892_C|T, 898_C|T, 901_CC|TT, 904_T|A, 910_A|G,
931_C|T, 941_C|T, 949_C|T, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 985_T|A, 991_T|A, 1036_T|C, 1042_T|C, 1045_CC|TT, 1051_G|A, 1054_A|G, 1066_C|T, 1072_T|G, 1090_T|C, 1102_C|A, 1111_G|A,
1117_A|T, 1127_A|G, 1138_G|A, 1140_TG|CA, 1158_A|G, 1162_A|G, 1165_TC|CT, 1168_C|G, 1171_T|C, 1183_T|C, 1189_C|T, 1204_T|C, 1207_A|T, 1216_CC|TT, 1219_A|G, 1222_T|C, 1228_G|A, 1234_A|G,
1237_G|A, 1246_G|C, 1249_C|T, 1252_G|A, 1255_C|A, 1261_T|C, 1267_T|C, 1279_C|G, 1285_C|T, 1294_A|G, 1298, 1306_.|A, 1321_C|T, 1327_A|G, 1333_T|C, 1342_A|G, 1351_TT|CC, 1366_T|C, 1378_T|C,
1387_C|T, 1393_A|G, 1400_T|C, 1408_A|T, 1411_G|A, 1423_A|G, 1426_T|C, 1432_TA|CG, 1435_C|T, 1441_T|C, 1447_T|C, 1453_G|A, 1474_C|T, 1480_A|G, 1482_TC|CT, 1486_G|A, 1491_T|C, 1495_G|A,
1501_A|G, 1504_A|G, 1507_T|C, 1516_A|G, 1522_G|A, 1528_A|G, 1531_T|C, 1534_G|A, 1544_G|A, 1546_T|C, 1549_C|T, 1552_T|C, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1603_C|T,
1606_G|A, 1609_C|T, 1618_G|A, 1621_A|T, 1642_G|T, 1669_C|G, 1672_A|G, 1675_T|C, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1696_T|C, 1701_G|A, 1705_AC|GT, 1708_G|A, 1723_G|A, 1732_C|T, 1747_T|C,
1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1777_A|C, 1782_A|G, 1785_A|G, 1792_T|G, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1819_T|A, 1822_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T,
1879_C|T, 1887_T|C, 1894_C|G, 1915_C|A, 1924_T|C, 1926_TT|CC, 1946_T|C, 1969_T|C, 1978_A|G, 1981_A|G, 1993_T|C, 2000_G|T, 2003_A|G, 2008_T|C, 2020_G|A, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A,
2038_C|A, 2044_A|C, 2047_C|T, 2053_T|G, 2063_C|T, 2080_A|C, 2083_T|C, 2086_T|C, 2089_A|G, 2098_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2119_T|C, 2122_A|T, 2125_T|C, 2128_C|G, 2131_T|C,
2146_A|G, 2152_A|C, 2164_A|G, 2168_T|C, 2188_A|G, 2193_T|C, 2197_A|G, 2201_C|T, 2209_C|T, 2215_A|G, 2218_CA|TG, 2230_T|C, 2239_C|T, 2248_G|A, 2251_C|T, 2254_C|T, 2257_T|A, 2260_G|A, 2266_G|A,
2275_T|A, 2278_T|C, 2280_C|T, 2299_T|C, 2302_G|A, 2305_GC|AT, 2308_A|G, 2314_C|T, 2322_AC|GT, 2335_G|A, 2344_G|T, 2350_G|A, 2353_A|C, 2376_CA|TG, 2380_A|G, 2395_C|T, 2413_A|T, 2419_G|C,
2431_TT|CC, 2437_T|C, 2446_T|G, 2455_T|C, 2464_C|T, 2467_C|A, 2479_C|T, 2494_G|A, 2497_C|T, 2500_A|G, 2503_T|C, 2506_TA|AG, 2509_C|T, 2515_A|C, 2521_A|G, 2524_C|T, 2527_T|A, 2533_C|T,
2548_C|T, 2566_T|C, 2569_T|A, 2575_G|A, 2581_A|T, 2593_A|G, 2599_T|C, 2602_T|C, 2620_CC|TT, 2626_T|C, 2632_T|C, 2638_C|T, 2641_T|G, 2644_G|A, 2650_G|A, 2659_A|G, 2668_A|G, 2686_TT|CC,
2695_A|G, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_T|C, 2734_G|A, 2737_TG|CA, 2740_T|C, 2752_A|G, 2755_T|A, 2761_A|T, 2764_T|C, 2776_G|T,
2782_TC|CT, 2788_G|A, 2794_T|C, 2803_T|C, 2824_C|T, 2827_C|T, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2926_T|C, 2947_A|T, 2950_C|A, 2962_C|T,
2983_A|G, 2986_C|T, 3007_T|G, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|A, 3098_T|C, 3104_G|A, 3107_T|C, 3109_A|G,
3121_G|A, 3127_G|A, 3133_AC|GT, 3142_T|C, 3157_A|C, 3169_T|C, 3172_A|C, 3187_A|G, 3199_C|T, 3205_T|G, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|A, 3238_T|C, 3244_G|A, 3247_C|T, 3250_A|G,
3265_A|G, 3271_A|G, 3289_T|C, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3313_T|C, 3316_T|C, 3319_CAAC|TGGT, 3328_T|C, 3331_A|G, 3334_G|T, 3349_A|G, 3358_G|C, 3361_T|C, 3364_C|T,
3370_AG|GA, 3382_A|G, 3394_C|A, 3397_C|A, 3400_C|T, 3412_T|A, 3421_C|T, 3427_T|G, 3436_G|T, 3439_T|C, 3460_G|A, 3469_A|G, 3472_G|A, 3478_A|T, 3480_G|A, 3484_T|C, 3490_G|T, 3496_C|A, 3502_T|G,
3514_AA|GG, 3517_A|C, 3523_T|A, 3529_T|C, 3535_TT|GC, 3569_C|T, 3573_G|A, 3577_A|G, 3589_A|C, 3598_GT|AC, 3601_G|A, 3610_AG|CA, 3620_T|C, 3622_G|A, 3628_A|C, 3632_C|T, 3634_G|A, 3637_C|T,
3640_G|A, 3643_A|G, 3646_A|G, 3649_T|C, 3652_CC|GT, 3655_T|G, 3667_A|G, 3673_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3715_A|G, 3721_C|T, 3727_T|C, 3733_GT|CC, 3739_T|C,
3745_C|T, 3757_A|G, 3763_G|A, 3778_T|C, 3782_C|T, 3784_C|G, 3790_C|A, 3793_A|G, 3802_T|C, 3820_G|A, 3826_A|G, 3832_A|T, 3847_T|A, 3851_T|C, 3856_T|C, 3860_G|A, 3868_C|A, 3871_CC|GT, 3883_T|C,
3895_T|G, 3898_T|C, 3908_C|T, 3928_T|C, 3931_TA|CC, 3934_G|A, 3946_T|C, 3949_C|T, 3953_T|C, 3955_G|A, 3959_C|T, 3961_C|G, 3967_TC|GT, 3982_C|G, 3985_T|A, 3998_A|C, 4006_CG|AA, 4009_A|G,
4013_T|C, 4021_TG|CA, 4030_T|C, 4036_A|C, 4045_T|C, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4096_C|T, 4099_C|T, 4105_C|G, 4108_A|T, 4117_G|A, 4120_C|A, 4129_A|G, 4142_C|T,
4150_A|C, 4153_TC|CA, 4165_C|A, 4168_A|G, 4171_T|C, 4174_G|A, 4183_T|C, 4198_G|A, 4204_C|T, 4210_A|G, 4216_T|C, 4219_A|C, 4234_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4264_C|T, 4267_T|G, 4270_T|C,
4274_A|G, 4285_A|G, 4289_C|A, 4291_C|T, 4303_G|A, 4306_T|C, 4321_G|A, 4330_G|A, 4333_A|C, 4336_G|A, 4341_A|G, 4348_T|A, 4351_T|A, 4360_A|T, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T,
4399_C|T, 4411_A|T, 4423_A|G, 4429_G|A, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4456_G|T, 4465_C|T, 4469_G|A, 4474_G|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4504_CC|TA, 4507_C|T, 4516_T|C,
4519_T|A, 4522_TC|CA, 4531_C|T, 4547_T|C, 4557_G|A, 4576_G|A, 4579_T|C, 4583_T|C, 4585_G|C, 4594_T|C, 4598_A|G, 4600_T|A, 4603_T|C, 4605_AG|CA, 4609_CA|TG, 4612_C|T, 4618_A|G, 4628_C|T,
4630_G|A, 4639_G|A, 4651_A|T, 4663_C|T, 4666_CT|TC, 4669_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4711_G|C, 4720_A|G, 4732_C|G, 4741_A|T, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4769_T|C,
4771_GA|AG, 4774_T|C, 4778_T|A, 4792_A|C, 4798_A|G, 4819_C|T, 4829_T|C, 4831_G|A, 4849_A|G, 4852_G|A, 4855_A|G, 4870_C|T, 4873_G|A, 4876_T|C, 4878_TT|CC, 4882_A|C, 4890_A|G, 4900_C|T,
4903_C|T, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4939_G|C, 4954_T|G, 4957_C|G, 4969_T|C, 4975_T|C, 4978_C|T, 4981_T|C, 4984_A|C, 4987_A|C, 4993_T|C, 4999_T|C, 5008_C|T,
5011_A|T, 5014_G|A, 5020_T|A, 5024_C|T, 5026_G|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5088_TG|CA, 5092_G|A, 5101_A|G, 5107_G|A, 5113_C|T, 5116_A|G, 5119_G|A,
5152_TG|CA, 5155_C|T, 5161_T|C, 5164_T|C, 5173_A|G, 5176_T|C, 5185_A|T, 5191_T|C, 5194_C|T, 5200_A|C, 5206_CT|TC, 5209_G|A, 5212_C|T, 5215_G|A, 5230_CT|GC, 5239_T|A, 5245_GT|TC, 5251_C|T,
5257_C|T, 5260_G|A, 5269_T|C, 5272_T|C, 5275_A|G, 5281_G|A, 5287_T|C, 5302_C|T, 5305_G|A, 5308_A|G, 5311_C|T, 5323_T|C, 5326_T|C, 5332_T|G, 5335_C|T, 5344_G|A, 5353_C|T, 5368_C|T, 5380_A|G,
5383_T|A, 5393_T|C, 5401_A|G, 5407_G|A, 5410_T|G, 5413_T|A, 5416_C|T, 5428_C|T, 5431_T|C, 5440_A|G, 5443_C|T, 5449_T|C, 5452_G|A, 5458_A|G, 5461_T|C, 5470_C|A, 5473_T|C, 5488_G|A, 5500_G|A,
5509_A|G, 5530_A|T, 5539_G|T, 5542_T|A, 5545_G|A, 5569_A|G, 5575_T|G, 5584_A|G, 5593_A|G, 5596_G|A, 5599_C|T, 5602_A|T, 5619_A|G, 5623_A|G, 5626_G|T, 5639_C|T, 5641_A|G, 5647_C|T, 5662_A|C,
5668_C|T, 5683_A|G, 5689_A|G, 5692_T|C, 5701_T|A, 5708_T|C, 5710_G|A, 5713_T|C, 5716_G|A, 5722_A|G, 5737_C|G, 5740_G|A, 5749_A|G, 5758_G|A, 5760_G|A, 5764_A|G, 5767_C|T, 5773_G|A, 5776_A|C,
5779_G|A, 5788_A|G, 5797_T|C, 5800_A|C, 5827_A|G, 5836_T|C, 5839_C|T, 5846_C|A, 5857_T|C, 5872_T|C, 5875_G|A, 5893_A|G, 5914_A|G, 5917_G|A, 5926_T|G, 5932_C|A, 5935_A|C, 5938_C|T, 5941_T|C,
5947_T|C, 5953_G|A, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|A, 5980_C|T, 5983_A|G, 5989_A|G, 5992_C|T, 5998_C|T, 6001_C|T, 6004_T|C, 6013_T|A, 6023_A|G, 6025_T|C, 6034_C|T, 6037_C|T, 6047_T|C,
6052_G|A, 6058_A|G, 6065_T|C, 6100_C|A, 6113_G|A, 6115_T|A, 6118_A|G, 6121_A|G, 6124_T|A, 6127_A|G, 6136_T|C, 6142_T|G, 6145_T|C, 6154_AC|GT, 6157_G|A, 6160_G|A, 6169_G|A, 6174_A|G, 6182_A|C,
6187_A|G, 6199_T|C, 6208_G|T, 6211_C|T, 6220_T|C, 6223_G|A, 6229_A|G, 6235_C|T, 6244_TT|AC, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6280_C|T, 6283_T|A, 6292_T|C, 6310_C|T, 6316_A|G, 6322_G|A,
6334_T|C, 6346_A|G, 6351_A|G, 6355_T|C, 6359_C|A, 6361_C|G, 6373_T|C, 6379_A|G, 6385_G|T, 6391_T|C, 6400_T|C, 6403_G|T, 6406_GT|TG, 6409_T|C, 6415_T|C, 6418_T|A, 6433_T|C, 6439_G|A, 6442_A|G,
6445_T|G, 6448_T|A, 6451_A|G, 6457_A|G, 6463_G|A, 6478_T|A, 6490_T|C, 6493_A|G, 6508_A|G, 6514_T|C, 6517_C|T, 6523_T|C, 6530_C|T, 6532_CC|GA, 6535_C|T, 6547_C|T, 6550_T|C, 6569_C|T, 6571_A|G,
6595_A|G, 6611_A|G, 6613_A|T, 6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T, 6664_A|G, 6667_C|A, 6673_T|C, 6682_T|C, 6688_G|A, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6733_C|T, 6745_T|C,
6757_TG|CA, 6766_C|A, 6772_C|T, 6790_T|G, 6794_A|G, 6796_C|T, 6799_C|A, 6805_A|G, 6808_G|A, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6835_A|G, 6841_A|T, 6844_C|T, 6850_T|C,
6856_C|T, 6859_CC|TA, 6866_C|T, 6874_A|T, 6876_C|T, 6883_A|G, 6889_C|T, 6892_G|A, 6895_A|G, 6902_C|T, 6907_G|A, 6910_A|G, 6916_A|G, 6919_G|A, 6925_C|T, 6931_G|A, 6934_G|A, 6936_A|G, 6940_C|T,
6943_A|G, 6953_A|G, 6955_TG|CA, 6958_TT|CG, 6969_G|A, 6976_G|A, 6986_C|T, 6988_G|A, 6997_A|G, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|G, 7036_C|T, 7039_T|C, 7046_T|C, 7054_C|T,
7063_A|G, 7066_C|T, 7069_A|G, 7084_T|C, 7096_A|T, 7114_CC|TT, 7117_T|A, 7120_T|A, 7135_G|T, 7138_A|C, 7141_A|G, 7156_T|C, 7159_C|T, 7171_G|C, 7174_G|A, 7177_GG|AA, 7216_C|T, 7225_A|T,
7228_G|A, 7240_C|T, 7243_C|T, 7247_T|A, 7249_T|C, 7255_T|C, 7258_A|G, 7261_T|C, 7270_A|G, 7273_G|A, 7279_G|A, 7286_C|T, 7288_T|G, 7297_A|G, 7300_G|A, 7306_C|T, 7312_C|T, 7318_CG|TA, 7321_G|A,
7324_C|T, 7327_T|A, 7339_G|A, 7350_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7408_T|C, 7412_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7426_C|T, 7429_A|G, 7432_T|C, 7450_A|G,
7453_G|C, 7456_C|T, 7465_G|A, 7468_T|C, 7480_CC|GT, 7492_T|A, 7495_CT|TC, 7498_A|G, 7501_G|A, 7504_G|A, 7516_A|G, 7519_C|T, 7531_T|G, 7552_C|A, 7571_A|C, 7580_C|T, 7597_A|T, 7612_A|C,
7630_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7657_T|C, 7666_A|G, 7675_G|A, 7681_A|G, 7687_TC|CT, 7691_T|C, 7701_G|A, 7712_T|C, 7717_T|C, 7726_C|A, 7732_T|C, 7744_T|C, 7750_T|G, 7753_G|A, 7759_C|T,
7762_G|A, 7765_TT|CC, 7771_C|T, 7789_C|T, 7798_G|T, 7804_C|T, 7807_G|A, 7813_C|T, 7816_A|T, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7855_G|A, 7858_A|G, 7861_T|C, 7869_T|C, 7874_C|T,
7876_G|A, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7906_C|T, 7915_G|A, 7918_A|G, 7921_G|A, 7924_A|G, 7936_C|T, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7969_G|A, 7990_TC|CT,
8011_C|T, 8014_C|T, 8023_A|G, 8029_T|C, 8039_C|T, 8044_A|G, 8048_G|A, 8053_A|G, 8065_T|C, 8071_T|C, 8074_C|T, 8086_A|G, 8089_AT|TC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8120_G|A, 8123_A|C,
8134_T|C, 8137_T|C, 8140_A|T, 8143_A|G, 8152_G|T, 8154_C|G, 8158_T|C, 8161_G|T, 8167_C|G, 8169_A|G, 8173_C|T, 8188_A|G, 8209_T|G, 8212_C|T, 8218_AC|GT, 8224_A|G, 8227_G|A, 8245_C|T, 8248_A|G,
8251_A|G, 8254_G|C, 8260_G|A, 8266_T|C, 8275_G|A, 8278_T|C, 8284_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8302_G|A, 8317_C|T, 8320_TG|CA, 8329_T|C, 8341_A|G, 8344_A|G, 8354_C|T, 8356_G|A, 8362_G|A,
8374_T|C, 8380_T|A, 8383_A|C, 8392_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8440_A|G, 8446_G|A, 8449_A|G, 8452_C|A, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|C, 8476_A|G, 8485_G|A, 8488_G|A,
8500_G|A, 8505_T|C, 8507_A|G, 8510_T|A, 8512_T|C, 8519_T|C, 8551_C|T, 8554_C|T, 8557_T|C, 8574_A|G, 8584_A|G, 8587_T|C, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8608_T|A, 8611_T|G, 8617_A|G,
8629_T|C, 8632_A|C, 8650_G|A, 8656_A|T, 8671_T|A, 8680_C|T, 8692_G|A, 8707_A|G, 8743_G|A, 8746_A|C, 8749_T|C, 8752_G|A, 8755_G|A, 8764_A|G, 8770_C|T, 8773_C|T, 8792_C|T, 8797_C|T, 8800_A|G,
8808_A|G, 8815_AC|GT, 8824_A|T, 8830_A|G, 8833_A|G, 8836_T|C, 8839_T|A, 8851_A|C, 8854_T|C, 8866_T|C, 8874_A|T, 8923_C|T, 8926_A|G, 8929_G|A, 8939_C|T, 8954_A|C, 8957_AA|CG, 8962_G|A,
8971_A|G, 8974_C|T, 9007_G|A, 9019_G|A, 9022_G|A, 9034_T|C, 9037_G|A, 9043_A|G, 9046_G|A, 9052_C|T, 9055_T|C, 9061_A|C, 9067_T|C, 9074_C|T, 9082_G|C, 9085_G|A, 9100_G|A, 9113_C|T, 9115_G|A,
9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9160_G|T, 9163_A|G, 9166_C|T, 9169_T|C, 9172_CT|AC, 9175_A|G, 9179_T|C, 9181_C|T, 9187_A|C, 9190_T|C, 9201_A|G, 9212_A|T, 9214_G|A, 9217_T|A, 9232_C|T,
9235_G|A, 9244_C|A, 9259_G|A, 9274_A|G, 9277_C|T, 9280_T|G, 9313_C|T, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_A|G, 9335_CAA|TTG, 9340_A|T, 9343_G|A, 9361_G|A, 9367_A|G, 9379_G|C, 9382_G|A,
9397_A|T, 9406_C|A, 9409_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9439_A|G, 9463_T|C, 9466_TC|AT, 9472_C|T, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9505_A|G, 9527_A|G, 9529_A|G, 9532_T|C, 9538_A|G,
9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|TG, 9562_A|G, 9566_C|T, 9571_C|A, 9573_G|A, 9577_G|T, 9590_A|G, 9598_C|T, 9601_A|C, 9607_C|T, 9610_AC|GT, 9625_G|A, 9631_T|C, 9637_C|T,
9646_G|C, 9658_C|T, 9670_C|T, 9679_C|T, 9685_C|T, 9709_TA|GC, 9712_A|C, 9745_G|A, 9754_T|C, 9769_C|G, 9775_T|C, 9790_T|C, 9796_A|G, 9799_G|A, 9817_G|A, 9820_T|C, 9835_A|G, 9838_A|T, 9841_G|A,
9844_C|T, 9850_C|A, 9856_G|A, 9859_A|G, 9865_G|A, 9868_G|T, 9880_C|T, 9898_A|G, 9904_T|A, 9910_C|A, 9916_A|G, 9919_C|T, 9938_C|T, 9946_T|C, 9955_A|G, 9958_G|A, 9970_A|G, 9977_T|C, 9985_T|C,
9988_C|T, 9991_A|T, 10003_C|A, 10006_A|G, 10018_A|G, 10021_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10051_G|A, 10066_G|A, 10096_A|G, 10103_AC|GT, 10126_C|T, 10129_G|A, 10132_A|G, 10134_TG|CA,
10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10159_T|C, 10162_T|C, 10174_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10213_T|C, 10222_C|T, 10228_C|A, 10231_C|T, 10234_C|T, 10237_C|T,
10240_TT|CC, 10243_A|G, 10246_C|G, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_GC|AT, 10273_AC|GA, 10276_G|T, 10291_C|T, 10294_C|T, 10297_A|G, 10309_C|T, 10312_G|A, 10315_T|C,
10336_A|G, 10338_TG|CC, 10342_T|C, 10348_T|C, 10355_A|G, 10363_C|T, 10365_AA|TG, 10369_10377, 10381_10382, 10385, 10391_10397, 10402_10410, 10414, 10418_10422, 10425_C|T, 10427_10429,
10434_10442, 10444_10445, 10450, 10451_C|T, 10455_10460, 10464_10475, 10522, 10524_G|A, 10526_C|T, 10533_A|G, 10535_T|G, 10550_C|G, 10554_CAC|TGT, 10558_A|G, 10562_T|C, 10605_A|C, 10607_C|T,
10620_A|C, 10635_G|A, 10639_C|T, 10647_C|T, 10658_.|C, 10659_AG|TA, 10681_C|T, 10738_C|T, 10817_T|C, 10847_C|A
Case 3 (A.1): PQ441955.1
| Target: 835 samples | Number of changes: 1437 | |
| BC: A.1.NmC2 + A.1 | BC BR: 11-12 | BC BR coord: 280 - 281 |
| Direction L1: << | Initial region span: 1-9,1412-1437 | Gap history (edge excluded): 9-1412 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 9.54e-02 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
9 |
2.616115 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1412 |
8.011651 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 108_C|T, 118_C|A, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 271_T|C, 280_CA|TG, 289_T|C, 295_A|G, 304_A|T, 307_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G,
352_G|A, 358_T|C, 361_A|G, 363_G|A, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 446_T|C, 448_C|T, 451_A|G, 455_T|C, 467_T|C, 473_ACG|GTT,
488_T|C, 496_G|C, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 550_C|T, 556_G|T, 559_C|T, 565_C|T, 577_A|C, 584_T|C, 589_A|G, 610_C|T, 613_A|C, 628_T|C, 631_C|T, 649_G|A, 655_A|T,
664_T|A, 670_C|T, 676_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_725, 727_728, 732_736, 747_.|GTCCAGAAG, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G,
811_T|C, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 859_G|A, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 916_C|T,
931_C|T, 934_G|C, 937_T|A, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G,
1081_T|C, 1094_T|C, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1138_G|A, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|A, 1171_TC|CA, 1181_A|G, 1183_T|C, 1207_A|T, 1210_G|A,
1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|C, 1249_C|T, 1255_C|A, 1261_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1288_T|C, 1294_A|G, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T,
1333_T|C, 1339_C|T, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1433_A|G, 1435_C|T, 1441_T|C, 1444_G|A, 1462_C|T, 1465_G|T, 1474_C|T,
1482_TC|CT, 1491_T|C, 1495_G|A, 1501_A|G, 1504_A|G, 1507_T|C, 1510_A|C, 1516_A|G, 1525_G|A, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1546_T|C, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A,
1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1675_T|C, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1696_T|C, 1701_G|A, 1705_AC|GT, 1714_G|T,
1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1760_A|C, 1762_G|A, 1771_G|A, 1781_G|A, 1785_A|G, 1789_C|G, 1792_T|G, 1798_A|G, 1801_A|G, 1804_T|C, 1807_T|G, 1810_A|G, 1813_T|C, 1819_T|G,
1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|A, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_TT|CC, 1900_C|T, 1915_C|A, 1921_C|T, 1926_TT|CA, 1936_G|A, 1942_A|G,
1946_T|C, 1951_A|G, 1957_C|G, 1969_T|C, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2050_T|C,
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9955_A|G, 9970_A|G, 9973_G|T, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10072_C|T, 10081_G|A, 10096_A|G,
10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10140_AAA|GGG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A,
10222_C|T, 10228_C|A, 10240_TT|CC, 10243_A|G, 10246_C|A, 10249_C|A, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10294_C|T, 10297_A|G, 10315_T|C, 10330_C|T, 10336_A|G,
10338_TG|CC, 10348_T|C, 10355_A|G, 10361_10369, 10371_10375, 10378_10387, 10391_10397, 10401_10412, 10417, 10420_10421, 10424_10427, 10430_10437, 10439_10441, 10447_10450, 10452_10454, 10457,
10458_C|T, 10460_C|T, 10463_T|A, 10466_A|G, 10470_G|A, 10475_AGA|TTG, 10512, 10605_AC|CT, 10608_T|C, 10632_C|T, 10635_G|A, 10639_C|T, 10647_C|T, 10658_AG|CC, 10662_.|T, 10681_CT|TC,
10703_C|T
Case 3 (A.1): OP508607.1
| Target: 835 samples | Number of changes: 612 | |
| BC: A.1 + A.1.NmC1 | BC BR: 230-231 | BC BR coord: 6022 - 6023 |
| Direction L1: << | Initial region span: 1-230,231-612 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 5.25e-88 | |
| Rec. model vs L1: 7.12e-30 | Rec. model vs L2: 5.13e-33 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
231 |
7.003411 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
188 |
2.671382 |
-35.14282 |
1744.28564 |
4.948660e-19 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
231 |
38.078386 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 535_C|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C,
703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G,
841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G,
982_C|T, 985_T|A, 991_T|A, 994_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C,
2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C,
2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2242_T|C, 2248_G|A,
2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G,
2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A,
2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G,
3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C,
3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A,
5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 6023_A|G,
6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G,
6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6430_A|G,
6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6526_GT|TC, 6529_CC|TT, 6532_C|G, 6547_C|T,
6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T,
6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T,
6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T,
6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T,
7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A,
7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A,
7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T,
8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T,
8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T,
8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A,
8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G,
8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A,
9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC,
9385_A|G, 9391_C|T, 9397_A|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C,
9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A,
9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C,
9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G,
10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G
Case 3 (A.1): OP508611.1
| Target: 835 samples | Number of changes: 555 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 106-107, 242-243 | BC BR coord: 1157 - 1158, 6429 - 6430 |
| Direction L1: << | Initial region span: 1-106,107-242,243-555 | Gap history (edge excluded): 106-243 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 3.39e-31 | |
| Rec. model vs L1: 6.55e-50 | Rec. model vs L2: 1.69e-30 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
106 |
11.446101 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
107 |
16.053856 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
243 |
-0.104244 |
-58.104191 |
1644.208382 |
6.204706e-33 |
|
|
|
| A.1.NmC2 |
0 |
243 |
-0.139336 |
-104.431540 |
1736.863079 |
4.720949e-53 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
243 |
29.215823 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G,
370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A,
514_C|T, 517_A|G, 523_G|T, 535_C|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T,
682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 943_A|G, 946_G|A, 961_T|C,
964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1045_CC|TT, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A,
1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1915_C|A,
1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A,
2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T,
2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A,
3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A,
3947_ACC|GTT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T,
4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A,
5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A,
6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6526_GT|TC, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6869_G|A, 6874_A|T,
6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A,
7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C,
7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7231_C|T, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7492_T|A,
7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA,
8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8111_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G,
8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A,
8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC,
8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G,
8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T,
8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T,
9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G,
9391_C|T, 9397_A|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G,
9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T,
9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C,
9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C,
10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G
Case 3 (A.1): OP508620.1
| Target: 835 samples | Number of changes: 785 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 652-653, 688-689 | BC BR coord: 8391 - 8392, 9462 - 9463 |
| Direction L1: >> | Initial region span: 1-652,671-688,689-785 | Gap history (edge excluded): 652-689 -> 652-671 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.91e-11 | |
| Rec. model vs L1: 1.33e-18 | Rec. model vs L2: 1.75e-21 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
652 |
19.944874 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
138 |
7.172705 |
-19.69784 |
2625.39568 |
9.869578e-23 |
|
|
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
671 |
1.863676 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
689 |
-0.059376 |
-23.720855 |
325.441709 |
1.912547e-11 |
|
|
|
| A.1.NmC2 |
0 |
689 |
-0.122324 |
-26.293186 |
330.586371 |
1.456478e-12 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
689 |
11.025436 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T,
376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A,
655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A,
802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T,
934_G|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G,
1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T,
1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1915_C|A,
1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1963_C|T, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A,
2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2863_A|G, 2878_A|G, 2881_C|T,
2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T,
3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A,
3127_G|A, 3133_A|G, 3142_T|C, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G,
3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G,
3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC,
3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3790_C|G, 3793_A|G, 3802_T|C,
3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A,
3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T,
4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T,
4324_G|A, 4330_G|A, 4333_A|T, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 5164_T|C, 5182_G|A, 5194_C|T,
5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5290_T|C, 5296_CC|TT, 5299_G|A,
5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G,
5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T,
6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G,
6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C,
6611_A|G, 6613_A|T, 6619_T|C, 6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T,
6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T,
6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A,
7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C,
7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G,
7297_A|G, 7306_C|T, 7312_C|T, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C,
7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C,
7721_A|C, 7726_C|A, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G,
8104_A|C, 8107_G|A, 8111_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A,
8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA,
8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T,
8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T,
9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_G|C, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G,
9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T,
9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9946_T|C, 9955_A|G, 9970_A|G,
9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T,
10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A,
10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C
Case 3 (A.1): OP508621.1
| Target: 835 samples | Number of changes: 737 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 150-151, 422-423 | BC BR coord: 1605 - 1606, 6596 - 6597 |
| Direction L1: << | Initial region span: 1-150,151-185,423-737 | Gap history (edge excluded): 150-423 -> 185-423 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.26e-09 | |
| Rec. model vs L1: 2.13e-26 | Rec. model vs L2: 2.47e-21 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
150 |
13.588398 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
186 |
5.023180 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
151 |
-0.064207 |
-35.500402 |
1525.000805 |
8.465687e-12 |
|
|
|
| A.1.NmC2 |
0 |
151 |
-0.142154 |
-69.657054 |
1593.314108 |
1.242608e-26 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
423 |
15.40089 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G,
370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A,
514_C|T, 517_A|G, 523_G|T, 535_C|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T,
961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1045_CC|TT, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A,
1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C,
1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1915_C|A, 1926_TT|CA, 1936_G|A,
1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|T, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T,
2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A,
2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G,
3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C,
3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A,
3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A,
3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C,
3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G,
3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A,
4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA,
4411_A|T, 4420_A|G, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C,
5284_G|A, 5287_T|C, 5290_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A,
5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C,
6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6526_GT|TC, 6530_C|T,
6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_TA|CT, 6611_A|G, 6613_A|T, 6619_T|C, 6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T, 6664_A|G, 6667_C|T, 6673_T|C,
6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA,
6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T,
6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T,
7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A,
7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G,
7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG,
7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C,
8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8111_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G,
8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G,
8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C,
8404_C|T, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A,
9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9454_A|G,
9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G,
9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T,
9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T,
9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A,
10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G
Case 3 (A.1): OP508634.1
| Target: 835 samples | Number of changes: 638 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 312-313, 480-481 | BC BR coord: 3097 - 3098, 8022 - 8023 |
| Direction L1: >> | Initial region span: 1-312,313-342,481-638 | Gap history (edge excluded): 312-481 -> 342-481 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.16e-18 | |
| Rec. model vs L1: 3.95e-34 | Rec. model vs L2: 1.41e-31 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
312 |
26.84112 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
239 |
13.07756 |
4.907164 |
1450.185672 |
4.205367e-16 |
|
|
|
| |||||
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
343 |
8.118996 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
313 |
0.000000 |
-73.823850 |
1549.647700 |
5.629740e-36 |
|
|
|
| A.1.NmC1 |
0 |
313 |
-0.522213 |
-37.957649 |
1477.915297 |
2.120606e-20 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
481 |
13.559262 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G,
370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A,
514_C|T, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C,
760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A,
886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A,
1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T,
1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T,
1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G,
1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A,
1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C,
2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T,
2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A,
2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2395_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A,
2545_G|A, 2548_C|T, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G,
2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C,
2920_G|A, 2932_G|A, 2947_A|T, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C,
3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A,
3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C,
5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5602_A|T, 5605_C|T,
5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T,
6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G,
6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C,
6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A,
6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T,
6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G,
7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC,
8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8338_C|T,
8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T,
8458_C|T, 8460_AA|GG, 8463_A|C, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8519_T|C, 8524_C|T, 8526_A|G, 8536_C|T, 8542_G|A, 8545_C|T, 8551_C|T,
8554_C|T, 8560_C|T, 8566_T|C, 8569_C|A, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A,
8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8749_T|C, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG,
9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A,
9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG,
10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G
Case 3 (A.1): OP508637.1
| Target: 835 samples | Number of changes: 751 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 558-559, 613-614 | BC BR coord: 6985 - 6986, 8742 - 8743 |
| Direction L1: >> | Initial region span: 1-388,576-613,614-751 | Gap history (edge excluded): 388-614 -> 388-576 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 8.85e-10 | |
| Rec. model vs L1: 2.81e-18 | Rec. model vs L2: 2.64e-26 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
388 |
32.746060 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
43 |
-0.902677 |
-33.838172 |
2419.676344 |
1.580471e-32 |
|
|
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
576 |
6.303242 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
614 |
-0.199542 |
-21.385724 |
550.771447 |
2.194647e-12 |
|
|
|
| A.1.NmC2 |
0 |
614 |
-0.271001 |
-36.457725 |
580.915449 |
6.228383e-19 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
614 |
12.271827 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G,
370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A,
514_C|T, 517_A|G, 523_G|T, 535_C|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T,
682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A,
1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T,
1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G,
1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1915_C|A, 1926_TT|CA, 1936_G|A,
1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T,
2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G,
2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2242_T|C, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C,
2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2687_T|C, 2698_C|T,
2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A,
2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A,
2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G,
3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A,
3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C,
3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G,
3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C,
3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T,
4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A,
4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A,
5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5602_A|T, 5605_C|T, 5614_C|T, 5626_G|T,
5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5992_C|T, 6004_T|C,
6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G,
6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A,
6286_G|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6526_GT|TC, 6529_CC|TT,
6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A,
6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A,
6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G,
7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7288_T|G, 7297_A|G, 7306_C|T, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G,
8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8111_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T,
8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8743_G|A, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G,
8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C,
8983_G|A, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A,
9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A,
9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A,
9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG,
10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T,
10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A,
10281_A|G, 10297_A|G
Case 3 (A.1): OP508639.1
| Target: 835 samples | Number of changes: 474 | |
| BC: A.1 + A.1.NmC1 | BC BR: 316-317 | BC BR coord: 8772 - 8773 |
| Direction L1: << | Initial region span: 1-316,317-474 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.85e-129 | |
| Rec. model vs L1: 1.59e-13 | Rec. model vs L2: 8.65e-55 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
317 |
12.761677 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
50 |
7.629889 |
-60.410368 |
2578.820736 |
1.669832e-32 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
317 |
16.949917 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
835 |
51 |
3.414556 |
-14.293089 |
418.586178 |
2.694442e-14 |
|
|
|
|
Target sequence
, 225_AC|GT, 247_T|C, 260_A|G, 262, 272_.|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T, 358_T|C, 361_A|G,
367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G,
511_G|A, 514_C|T, 517_A|G, 523_G|T, 535_C|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C,
1045_CC|TT, 1051_G|A, 1054_A|G, 1072_T|G, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C,
1183_T|C, 1207_A|T, 1210_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T,
1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A,
2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A,
2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C,
3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G,
3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C,
4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G,
5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C,
5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G,
6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6526_GT|TC, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A,
6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T,
7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7231_C|T,
7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT,
8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G,
8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A,
9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9424_T|C,
9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C,
9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T,
9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T,
10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G,
10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A,
10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G
Case 3 (A.1): OP508641.1
| Target: 835 samples | Number of changes: 697 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 303-304, 463-464 | BC BR coord: 4104 - 4105, 7743 - 7744 |
| Direction L1: << | Initial region span: 1-303,427-463,464-697 | Gap history (edge excluded): 303-464 -> 303-427 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 5.16e-10 | |
| Rec. model vs L1: 3.51e-23 | Rec. model vs L2: 6.34e-26 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
303 |
14.664484 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
427 |
6.171026 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
460 |
1.241393 |
-65.492829 |
1164.985659 |
2.321893e-28 |
|
|
|
| A.1.NmC1 |
0 |
460 |
-0.175993 |
-28.248735 |
1090.497470 |
3.476483e-12 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
464 |
20.476087 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T,
376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 432_T|C, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A,
514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A,
691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 1094_T|C, 1096_G|A, 1102_C|A,
1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G,
1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C,
2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA,
2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A,
2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T,
2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2545_G|A, 2548_C|T, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A,
2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|T, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C,
3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G,
3465_G|A, 3469_A|G, 3472_G|A, 3478_A|T, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G,
3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G,
3682_G|T, 3686_T|C, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A,
3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C,
5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C,
5290_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A,
5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5752_C|T, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5992_C|T, 5995_A|T, 6004_T|C, 6013_T|C,
6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A,
6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A,
6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T,
6523_T|C, 6526_GT|TC, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T,
6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7108_C|T, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T,
7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7712_T|C, 7721_A|C, 7726_C|A, 7738_G|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A,
7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA,
8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T,
8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C,
8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_A|C, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8497_T|A, 8500_G|A, 8505_TGA|CCG,
8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8638_C|T, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8749_T|C,
8755_G|A, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T,
9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT,
9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T,
9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A,
9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C,
10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C,
10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G,
10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C
Case 3 (A.1): OP508571.1
| Target: 835 samples | Number of changes: 1270 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 1235-1236 | BC BR coord: 10103 - 10104 |
| Direction L1: >> | Initial region span: 1-1102,1238-1270 | Gap history (edge excluded): 1102-1238 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.38e-183 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1102 |
153.610903 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
7 |
0.624153 |
-422.269352 |
3750.538705 |
4.817025e-231 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
1238 |
2.859189 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 283_T|C, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 451_A|G, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C,
493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 556_G|T, 568_C|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 598_C|T, 604_C|T, 610_C|T, 613_A|C, 625_C|T, 628_T|C,
649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C,
784_G|A, 799_A|G, 802_A|G, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G,
931_C|T, 934_G|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C,
1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T,
1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T,
1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT,
1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1522_G|A, 1525_G|A, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1546_T|C, 1549_C|T, 1558_C|T, 1561_T|A, 1570_A|G,
1572_C|A, 1579_C|T, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|T, 1669_C|G, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|C,
1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1781_G|A, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G,
1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_AT|GC, 1841_T|C, 1843_G|C, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C,
1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2077_C|T, 2080_A|T, 2083_T|C,
2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T,
2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A,
2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A,
2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2540_A|G, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C,
2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2683_C|T, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A,
2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T,
2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T,
3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A,
3133_A|G, 3142_T|C, 3172_A|C, 3178_C|T, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3229_A|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G,
3274_A|G, 3280_G|A, 3283_A|G, 3298_G|T, 3302_A|G, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA,
3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G,
3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T,
3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T,
3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3844_G|A, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C,
3895_T|G, 3898_T|C, 3901_C|T, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3955_G|A, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA,
4024_C|T, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4090_G|A, 4105_C|G, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C,
4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T,
4267_T|A, 4270_T|C, 4273_GA|AG, 4276_T|C, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A,
4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4505_C|A, 4519_T|A,
4522_TC|CT, 4525_GC|AT, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|C, 4591_T|C, 4600_T|A, 4603_T|C, 4606_G|A, 4612_C|T, 4618_A|G,
4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4654_C|T, 4663_C|A, 4667_T|C, 4669_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C,
4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|G, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T,
4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C,
4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G,
5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A,
5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A,
5346_G|A, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5449_T|C, 5452_G|A, 5458_A|G, 5470_C|A,
5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5605_C|T, 5614_C|T,
5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5719_T|C, 5737_C|G, 5740_G|A, 5760_GA|AG, 5773_G|A, 5776_A|T, 5779_G|A,
5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5929_C|T, 5932_C|A, 5935_A|T, 5941_T|C,
5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5986_T|C, 5989_A|G, 5992_C|T, 6004_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G,
6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A,
6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG,
6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6523_T|C,
6527_T|C, 6530_C|T, 6532_C|G, 6541_G|A, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A,
6934_G|A, 6940_C|T, 6943_A|G, 6946_T|C, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T,
7069_A|G, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T,
7228_G|A, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C,
7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7732_T|C, 7744_T|C,
7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A,
7869_T|C, 7873_C|T, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7987_A|G,
7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8048_G|A, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A,
8383_A|C, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8407_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T,
8476_A|G, 8485_G|A, 8488_G|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A,
8602_A|C, 8605_T|C, 8608_T|G, 8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8714_G|C, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A,
8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_A|G, 8830_A|G, 8833_A|G, 8836_T|C, 8839_T|A, 8848_C|T, 8851_A|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8954_A|C,
8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G,
9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9484_C|G, 9491_G|A, 9499_G|C, 9520_G|C, 9522_T|C,
9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A,
9637_C|T, 9646_G|C, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9754_T|C, 9762_A|G, 9772_C|T, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_G|A, 9817_G|A,
9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9865_G|A, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9919_C|A, 9922_T|C, 9946_T|C, 9955_A|G,
9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10116_A|G,
10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A,
10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C, 10330_C|T
Case 3 (A.1): OP508653.1
| Target: 835 samples | Number of changes: 652 | |
| BC: A.1.NmC1 + A.1.NmC2 + A.1.NmC1 | BC BR: 36-37, 83-84 | BC BR coord: 450 - 451, 825 - 826 |
| Direction L1: << | Initial region span: 1-36,37-83,535-652 | Gap history (edge excluded): 36-535 -> 83-535 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 4.82e-03 | |
| Rec. model vs L1: 3.51e-08 | Rec. model vs L2: 2.22e-246 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
36 |
5.157331 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
83 |
5.391301 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
835 |
147 |
4.930151 |
-3.593912 |
103.187823 |
0.000141 |
* |
|
|
| A.1.NmC1 |
0 |
83 |
-4.910617 |
-5.058400 |
106.116801 |
0.000032 |
* |
* |
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
535 |
13.425251 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 178_T|C, 192_A|G, 195_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 432_T|C, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 451_A|G, 455_T|C, 467_T|C, 473_ACG|GTT,
488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A,
655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A,
802_A|G, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A,
1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1887_T|C, 1915_C|A,
1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A,
2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C,
2920_G|A, 2932_G|A, 2947_A|T, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C,
3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3265_A|G, 3274_A|G,
3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA,
3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|T, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G,
3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G,
3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C,
4087_T|C, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T,
4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C,
4453_A|G, 4465, 4466_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A,
5266_T|C, 5284_G|A, 5287_T|C, 5290_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G,
5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 6430_A|G, 6439_G|A, 6442_A|G,
6445_T|C, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6526_GT|TC, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A,
6569_C|T, 6571_A|G, 6586_G|A, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T,
7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T,
7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C,
7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G,
7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7580_C|T, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G,
7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC,
8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G,
8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C,
8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG,
9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C,
9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A,
9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G,
9754_T|C, 9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G,
10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G,
10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A
Case 3 (A.1): OP508655.1
| Target: 835 samples | Number of changes: 809 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 55-56, 143-144 | BC BR coord: 648 - 649, 2808 - 2809 |
| Direction L1: << | Initial region span: 1-55,56-143,144-809 | Gap history (edge excluded): 55-144 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.05e-07 | |
| Rec. model vs L1: 1.61e-10 | Rec. model vs L2: 1.01e-31 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
55 |
7.101716 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
56 |
5.818563 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
144 |
-0.082541 |
-11.247606 |
640.495212 |
3.860052e-08 |
|
|
|
| A.1.NmC2 |
0 |
144 |
-0.168347 |
-24.035196 |
666.070393 |
1.081778e-13 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
144 |
36.34583 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G,
370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 496_G|C, 498_A|G, 511_G|A, 514_C|T,
517_A|G, 523_G|T, 535_C|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A,
1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T,
1237_G|A, 1246_G|T, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C,
1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1887_T|C,
1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A,
2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A,
2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C,
3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G,
3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G,
3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A,
3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3480_G|A, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G,
3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T,
3748_T|C, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G,
3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G,
4111_T|C, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4341_A|G,
4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T,
5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T,
5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5290_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T,
5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C,
5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A,
6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C,
6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6526_GT|TC,
6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_AC|GT, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G,
6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G,
6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A,
6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G,
7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA,
7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A,
7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A,
7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7738_G|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A,
7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A,
8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155,
8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G,
8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C,
9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG,
9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C,
9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T,
9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A,
9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T,
10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G,
10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A,
10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G
Case 3 (A.1): OP508701.1
| Target: 835 samples | Number of changes: 868 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 451-452, 514-515 | BC BR coord: 5193 - 5194, 7383 - 7384 |
| Direction L1: << | Initial region span: 1-378,452-514,515-868 | Gap history (edge excluded): 378-515 -> 378-452 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.62e-19 | |
| Rec. model vs L1: 4.30e-30 | Rec. model vs L2: 3.24e-25 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
378 |
18.684217 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
452 |
7.620593 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
515 |
-0.099094 |
-40.644275 |
673.288550 |
1.093394e-21 |
|
|
|
| A.1.NmC2 |
0 |
515 |
-0.157902 |
-47.491893 |
686.983785 |
1.164209e-24 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
515 |
24.564632 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 195_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A,
354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C,
493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 535_C|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A,
655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A,
802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G,
1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A,
1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A,
1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A,
2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|T, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G,
3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C,
3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A,
3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A,
3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C,
3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A,
3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C,
3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C,
3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C,
4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T,
4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A,
4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4397_C|T, 4399_C|T,
4408_GG|AA, 4411_A|T, 4420_A|G, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A,
4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C,
4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T,
5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A,
6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G,
7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C,
7216_C|T, 7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366,
7369_.|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G,
7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G,
7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC,
7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C,
7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T,
8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T,
8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T,
8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G,
8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8743_G|A, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G,
8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C,
8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C,
9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T,
9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT,
9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T,
9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A,
9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G,
9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T,
10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C,
10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C,
10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G
Case 3 (A.1): OP508707.1
| Target: 835 samples | Number of changes: 936 | |
| BC: A.1.NmC1 + A.1.NmC1 | BC BR: 589-590 | BC BR coord: 5640 - 5641 |
| Direction L1: >> | Initial region span: 1-468,739-936 | Gap history (edge excluded): 468-739 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.20e-14 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
468 |
33.441059 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
416 |
27.959289 |
12.700759 |
1572.598482 |
3.457967e-08 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
739 |
22.008976 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C,
718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A,
854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A,
991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C,
1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C,
1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A,
1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C,
1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A,
1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G,
1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C,
1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T,
2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2809_T|C, 2812_G|A,
2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T,
2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A,
3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T,
3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G,
3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A,
3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G,
3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C,
3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G,
3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G,
3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C,
4087_T|C, 4089_T|A, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T,
4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4341_A|G,
4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4769_T|C, 4772_A|G,
4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T,
4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4949_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C,
4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5113_C|A, 5116_A|G,
5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T,
5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5290_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C,
5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C,
5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T,
7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527,
7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C,
7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A,
7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C,
7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T,
8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C,
8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A,
8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8743_G|A, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G,
8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A,
9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C,
9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T,
9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C, 9466_TC|CT,
9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T,
9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A,
9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9865_G|A,
9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T,
10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C,
10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C,
10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T
Case 3 (A.1): OP508697.1
| Target: 835 samples | Number of changes: 796 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 446-447, 596-597 | BC BR coord: 5442 - 5443, 8742 - 8743 |
| Direction L1: << | Initial region span: 1-332,447-596,597-796 | Gap history (edge excluded): 332-597 -> 332-447 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 7.57e-23 | |
| Rec. model vs L1: 2.56e-35 | Rec. model vs L2: 1.03e-22 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
332 |
13.905693 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
447 |
6.935148 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
455 |
4.219374 |
-47.676947 |
1011.353894 |
1.919457e-24 |
|
|
|
| A.1.NmC1 |
0 |
597 |
-0.199542 |
-47.999214 |
1011.998428 |
1.386860e-24 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
597 |
21.986268 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 195_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A,
354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C,
496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 535_C|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 1352_T|C, 1354_G|A, 1390_C|T,
1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G,
1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T,
1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C,
1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T,
1855_G|A, 1861_C|T, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1888_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C,
2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G,
3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A,
3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A,
3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C,
3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G,
3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A,
3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C,
3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C,
3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA,
4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T,
4810_C|T, 4816_T|C, 4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|T, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C,
4921_G|A, 4927_A|G, 4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A,
5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T,
5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T,
5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5290_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T,
5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366, 7369_.|G,
7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A,
7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC,
7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T,
7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A,
7918_A|G, 7920_AG|GA, 7938_AA|GG, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G,
8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G,
8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C,
8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8743_G|A, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A,
8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG,
8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G,
9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G,
9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T,
9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA,
9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T,
9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T, 9796_A|G, 9799_GC|AT, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T,
9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9877_A|G, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C,
9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C,
10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G,
10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C
Case 3 (A.1): OP508672.1
| Target: 835 samples | Number of changes: 890 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 83-84, 146-147 | BC BR coord: 822 - 823, 2808 - 2809 |
| Direction L1: << | Initial region span: 1-83,84-146,147-890 | Gap history (edge excluded): 83-147 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 3.49e-10 | |
| Rec. model vs L1: 5.33e-13 | Rec. model vs L2: 7.33e-47 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
83 |
12.454574 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
84 |
8.354183 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
147 |
-0.082541 |
-14.417840 |
600.835679 |
1.285118e-10 |
|
|
|
| A.1.NmC2 |
0 |
147 |
-0.168347 |
-27.601782 |
627.203564 |
2.426286e-16 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
147 |
49.66869 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 195_A|G, 225_AC|GT, 247_T|C, 250_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G,
352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT,
488_T|C, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 535_C|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A,
655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A,
802_A|G, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A,
1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1887_T|C, 1915_C|A,
1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A,
2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A,
2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G,
3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C,
3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A,
3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A,
3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C,
3523_TG|AA, 3529_T|C, 3535_T|G, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G,
3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C,
3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C,
4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4105_C|G, 4111_T|C, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA,
4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A,
4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 5017_G|A, 5020_T|A,
5029_C|T, 5038_C|A, 5047_C|T, 5055_A|C, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G,
5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C,
5284_G|A, 5287_T|C, 5290_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A,
5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 6174_A|G,
6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A,
6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C,
6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6526_GT|TC, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6703_C|T, 6706_C|T,
6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T,
6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C,
6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A,
7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A,
7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G,
7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T,
7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C,
7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A,
7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T,
8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8111_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T,
8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C,
8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8773_C|T, 8782_G|A,
8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG,
8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G,
9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G,
9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T,
9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA,
9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T,
9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9778_C|T, 9787_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G,
9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T,
10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A,
10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G
Case 3 (A.1): OP508674.1
| Target: 835 samples | Number of changes: 692 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 364-365, 393-394 | BC BR coord: 4119 - 4120, 6939 - 6940 |
| Direction L1: >> | Initial region span: 1-234,365-393,394-692 | Gap history (edge excluded): 234-394 -> 234-365 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 4.54e-22 | |
| Rec. model vs L1: 2.39e-36 | Rec. model vs L2: 5.57e-24 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
234 |
22.666504 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
207 |
6.084243 |
-0.565832 |
2043.131664 |
1.638492e-15 |
|
|
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
365 |
11.641308 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
394 |
-0.012086 |
-67.754673 |
951.509346 |
3.305138e-35 |
|
|
|
| A.1.NmC1 |
0 |
394 |
-0.237150 |
-41.506755 |
899.013510 |
8.306532e-24 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
394 |
11.685784 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G,
370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 496_G|C, 498_A|G, 511_G|A, 514_C|T,
517_A|G, 523_G|T, 535_C|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A,
691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G,
835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A,
970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1045_CC|TT, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T,
1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A,
1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G,
1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG,
1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C,
1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C,
1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T,
2080_A|T, 2083_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T,
2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A,
3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C,
3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C,
3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G,
3658_T|C, 3667_A|G, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A,
3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C,
4105_C|G, 4111_T|C, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C,
6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6526_GT|TC, 6529_CC|TT, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6586_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C,
6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A,
7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A,
7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G,
7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T,
7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T, 7600_C|T, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C,
7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A,
7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T,
8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A,
8169_A|G, 8188_A|G, 8203_A|T, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C,
8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G,
8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C,
9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A,
9217_T|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9564_T|C, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G,
9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9946_T|C, 9955_A|G, 9970_A|G,
10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G,
10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G
Case 3 (A.1): OP508673.1
| Target: 835 samples | Number of changes: 624 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 55-56, 554-555 | BC BR coord: 708 - 709, 9636 - 9637 |
| Direction L1: << | Initial region span: 1-55,391-554,555-624 | Gap history (edge excluded): 55-555 -> 55-391 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.11e-18 | |
| Rec. model vs L1: 2.46e-41 | Rec. model vs L2: 3.86e-12 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
55 |
6.742519 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
391 |
8.878924 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
555 |
-0.115419 |
-50.268860 |
2644.537720 |
7.457998e-21 |
|
|
|
| A.1.NmC2 |
0 |
555 |
-0.125056 |
-82.588572 |
2709.177144 |
6.858428e-35 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
555 |
7.975507 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
835 |
391 |
1.126428 |
-13.332573 |
340.665146 |
6.544377e-13 |
|
|
|
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 195_A|G, 327_A|G, 346_A|G, 352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A,
442_G|A, 448_CC|TT, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 535_C|T, 538_C|T, 547_A|C, 553_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G,
595_G|A, 604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T,
1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1224_A|G, 1228_G|A, 1231_C|T,
1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T,
1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G,
1503_AA|GG, 1507_T|C, 1516_A|G, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1603_C|T, 1606_G|A, 1610_T|C, 1618_G|A,
1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C,
2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA,
3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G,
3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A,
3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C,
3745_C|T, 3748_T|C, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3919_T|C, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A,
4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4210_A|T, 4219_A|C,
4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4341_A|G, 4351_T|G, 4360_A|T,
4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C,
4834_A|T, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G,
4930_G|T, 4932_G|A, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4966_C|T, 4969_T|C, 4972_G|A, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T,
5038_C|A, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A, 5350_A|G, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5386_C|T, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C,
5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5479_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A,
7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C,
7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7231_C|T, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G,
7297_A|G, 7306_C|T, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G,
7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8047_AG|GA, 8050_G|A, 8053_A|G, 8059_C|T,
8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|T, 8167_C|A,
8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C,
8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8386_A|G, 8392_C|T, 8395_G|T, 8398_G|A,
8401_T|C, 8404_C|T, 8422_G|A, 8743_G|A, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T,
8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C,
9762_A|G, 9772_C|T, 9778_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9982_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T,
10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10104_C|T, 10111_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C,
10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C,
10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G
Case 3 (A.1): OP508579.1
| Target: 835 samples | Number of changes: 997 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 960-961 | BC BR coord: 9777 - 9778 |
| Direction L1: >> | Initial region span: 1-564,968-997 | Gap history (edge excluded): 564-968 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 7.51e-186 | Rec. model vs L2: 1.29e-258 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
564 |
82.180073 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
7 |
0.624153 |
-299.309362 |
3384.618725 |
3.592273e-162 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
968 |
2.982593 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 283_T|C, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A, 354_C|T,
358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 451_A|G, 455_T|C, 467_T|C, 473_ACG|GTT, 488_T|C,
493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 556_G|T, 568_C|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 598_C|T, 604_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A,
742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 799_A|G, 802_A|G, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G,
982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA,
1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A,
1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C,
1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1522_G|A,
1525_G|A, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1546_T|C, 1549_C|T, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1579_C|T, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T,
1642_G|T, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|C, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1781_G|A, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_AT|GC, 1841_T|C, 1843_G|C,
1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 2003_A|G, 2008_T|C, 2011_A|G,
2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T,
2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A,
2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C,
2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2540_A|G, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G,
2644_G|A, 2683_C|T, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G,
2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2833_G|A, 2836_G|A, 2863_A|G, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T,
2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A,
3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3178_C|T, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C,
3220_T|C, 3223_C|T, 3226_T|G, 3229_A|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C,
3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C,
3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT,
3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G,
3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G,
3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3844_G|A, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3895_T|G, 3898_T|C, 3901_C|T, 3928_T|C, 3931_T|C, 3934_G|A,
3947_AC|GT, 3953_T|C, 3955_G|A, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T,
4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4090_G|A, 4105_C|G, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C,
4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4270_T|C, 4273_GA|AG, 4276_T|C, 4289_C|A, 4306_T|C,
4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A,
4435_G|A, 4438_G|A, 4441_T|C, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A,
6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C,
6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6541_G|A, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T,
6619_T|C, 6622_A|G, 6625_AC|GT, 6631_A|G, 6634_G|T, 6643_C|T, 6658_T|C, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T,
6757_TG|CA, 6766_C|A, 6778_CC|TT, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6841_A|T, 6844_C|T, 6847_C|T, 6869_G|A, 6874_A|T,
6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6946_T|C, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T,
6991_G|A, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C,
7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T,
7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C,
7447_C|T, 7453_G|A, 7459_T|C, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7516_A|G, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|T,
7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C,
7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A,
7869_T|C, 7873_C|T, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7987_A|G,
7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8048_G|A, 8050_G|A, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8392_C|T, 8395_G|T,
8398_G|A, 8401_T|C, 8404_C|T, 8407_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A,
8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|C, 8605_T|C, 8608_T|G,
8611_T|G, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A,
8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T,
9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T,
9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G, 9463_T|C,
9466_TC|CT, 9472_C|T, 9478_C|T, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA,
9562_A|G, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10116_A|G,
10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A,
10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G
Case 3 (A.1): PQ276811.1
| Target: 835 samples | Number of changes: 1036 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 982-983 | BC BR coord: 9798 - 9799 |
| Direction L1: >> | Initial region span: 1-537,987-1036 | Gap history (edge excluded): 537-987 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.84e-177 | Rec. model vs L2: 9.46e-318 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
537 |
26.138536 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
33 |
2.313329 |
-472.484551 |
3778.969102 |
1.583716e-203 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
987 |
1.160477 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 337_C|T, 346_A|G, 352_G|A,
354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 436_G|A, 442_G|A, 449_C|T, 451_A|G, 455_T|C, 467_T|C, 473_ACG|GTT,
488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 556_G|T, 584_T|C, 589_A|G, 595_G|A, 598_C|T, 604_C|T, 607_A|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A,
655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 802_A|G,
823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C,
943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A,
1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|A, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T,
1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T,
1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1474_C|T, 1480_A|G, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG,
1516_A|G, 1525_G|A, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1636_T|C, 1642_G|C,
1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1696_T|C, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1781_G|A, 1785_A|G, 1789_C|G, 1792_T|G, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1813_T|C, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1855_G|A,
1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1909_C|T, 1915_C|A, 1924_T|C, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G,
2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A,
2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2476_T|C, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C,
2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2584_A|G, 2596_C|T, 2599_T|C, 2605_A|G, 2611_G|A, 2623_A|G, 2626_T|C, 2632_T|C,
2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|G, 2761_A|G,
2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2827_C|T, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C,
2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C,
3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3187_A|G, 3193_C|T,
3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3289_T|C, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G,
3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G,
3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G,
3556_A|C, 3568_CC|GT, 3571_A|G, 3577_A|G, 3589_A|C, 3595_A|G, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3632_C|T, 3634_G|A, 3637_C|T, 3640_G|A, 3646_A|G, 3650_C|A,
3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G,
3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|A, 3898_T|C, 3901_C|T, 3910_G|A, 3928_T|C,
3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|A, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T,
4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4099_C|T, 4103_C|T, 4105_C|G, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C,
4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 6174_A|G, 6182_A|C, 6187_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A,
6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6325_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A,
6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6490_T|C, 6493_A|G, 6508_AA|GG, 6517_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6544_A|G, 6547_C|T, 6550_T|C,
6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6646_C|T, 6649_T|C, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G,
6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6733_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T,
6826_A|G, 6832_C|T, 6835_A|G, 6841_A|T, 6844_C|T, 6847_C|T, 6850_T|C, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6895_A|G, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A,
6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6961_A|C, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 6994_A|G, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C,
7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G,
7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7286_C|T, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G,
7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7463_T|C, 7480_C|G,
7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7507_C|T, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7571_A|C, 7579_TC|CT, 7597_A|G, 7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G,
7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7738_G|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C,
7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T,
7900_T|C, 7912_T|G, 7915_G|A, 7918_A|G, 7920_AG|GA, 7927_G|T, 7936_C|T, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G,
8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A,
8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8154_CT|GC, 8161_G|C, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G,
8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G,
8380_T|A, 8383_A|C, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8407_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA,
8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8536_C|T, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8574_A|G, 8584_A|G, 8590_G|A,
8593_G|A, 8600_G|A, 8602_A|T, 8608_T|G, 8611_T|G, 8614_T|C, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G,
8749_T|C, 8755_G|A, 8764_A|G, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8821_C|T, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G,
8929_G|A, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|T,
9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9590_A|G,
9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|C, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9691_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G,
9754_T|C, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_G|A, 9817_G|A, 9823_G|A, 9829_T|C, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9862_A|G, 9865_G|A, 9880_C|T, 9883_C|T,
9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG,
10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G,
10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T
Case 3 (A.1): PV710608.1
| Target: 835 samples | Number of changes: 758 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 724-725 | BC BR coord: 10103 - 10104 |
| Direction L1: >> | Initial region span: 1-232,727-758 | Gap history (edge excluded): 232-727 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 3.14e-184 | Rec. model vs L2: 6.11e-273 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
232 |
26.093483 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
835 |
430 |
4.236542 |
-15.897928 |
2839.795855 |
29584.326798 |
* |
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
727 |
3.024741 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 538_C|T, 547_A|C, 556_G|T, 568_C|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 598_C|T, 604_C|T, 610_C|T, 613_A|C, 625_C|T, 628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T,
694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T, 781_T|C, 784_G|A, 799_A|G, 802_A|G, 826_A|G, 829_G|A, 832_A|G, 835_C|G,
838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T,
973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G,
1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A,
1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A,
1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G,
1522_G|A, 1525_G|A, 1528_A|G, 1534_G|A, 1543_TG|CA, 1546_T|C, 1549_C|T, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1579_C|T, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T,
1642_G|T, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|C, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A,
1765_T|C, 1771_G|A, 1781_G|A, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_AT|GC, 1841_T|C, 1843_G|C,
1852_G|A, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 2003_A|G, 2008_T|C,
2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G,
2125_T|C, 2128_C|G, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3229_A|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T,
3308_A|G, 3310_CA|TG, 3316_T|C, 3319_C|A, 3321_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C,
3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G,
3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A,
3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 4006_CG|AA, 4013_T|C, 4016_T|A, 4018_T|C, 4021_TG|CA, 4024_C|T, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4053_AT|GC,
4056_TC|CA, 4062_A|G, 4066_C|T, 4081_T|C, 4087_T|C, 4090_G|A, 4105_C|G, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C,
4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4270_T|C, 4273_GA|AG, 4276_T|C, 4289_C|A, 4306_T|C,
4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A,
4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5207_T|C, 5212_C|T, 5215_G|A, 5218_C|T, 5224_G|A, 5230_C|G,
5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5338_C|T, 5344_G|A, 5346_G|A,
5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC,
7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7696_C|T, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7732_T|C, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A,
7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7873_C|T, 7879_G|A, 7885_C|G, 7888_C|T,
7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7924_A|G, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G,
8035_C|T, 8041_A|T, 8044_A|G, 8048_G|A, 8050_G|A, 8053_A|G, 8059_C|T, 8063_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A,
8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|C, 8167_C|G, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T,
8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T,
8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8407_C|T, 8422_G|A, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T, 8782_G|A,
8788_C|T, 8792_C|T, 8815_A|G, 8830_A|G, 8833_A|G, 8836_T|C, 8839_T|A, 8848_C|T, 8851_A|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8954_A|C, 8956_GAA|ACG, 8965_C|T,
8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G,
9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C,
9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9445_C|T, 9454_A|G,
9463_T|C, 9466_TC|CT, 9472_C|T, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA,
9562_A|G, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|C, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T,
9703_C|A, 9709_TA|GC, 9715_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_G|A, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T,
9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9919_C|A, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9985_T|C,
9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10116_A|G, 10129_G|A, 10132_A|G, 10134_T|C,
10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G,
10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C
Case 3 (A.1): PP477075.1
| Target: 835 samples | Number of changes: 1474 | |
| BC: A.1 + A.1.NmC2 + A.1 | BC BR: 1417-1418, 1438-1439 | BC BR coord: 10248 - 10249, 10360 - 10361 |
| Direction L1: >> | Initial region span: 1-1417,1418-1437,1445-1474 | Gap history (edge excluded): 1417-1445 -> 1437-1445 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 7.71e-24 | |
| Rec. model vs L1: 2.61e+02 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1417 |
191.845915 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1437 |
7.612505 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1425 |
0.777482 |
-59.983015 |
163.966030 |
9.652456e-26 |
|
|
|
| A.1 |
835 |
1418 |
-0.101863 |
-3.342011 |
50.684021 |
3.848121e-01 |
* |
|
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1445 |
2.25698 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 80_A|G, 117_AC|TA, 166_A|T, 171_G|A, 178_T|C, 226_C|T, 247_T|C, 262_C|T, 280_CA|TG, 284_T|C, 294_AA|GG, 301_C|T, 304_A|T, 307_C|T, 310_CC|TT, 313_A|G, 318_G|A, 320_T|C, 322_G|A, 327_A|G,
346_A|G, 349_CT|GC, 352_G|A, 354_C|T, 361_A|G, 363_G|A, 367_A|G, 385_C|G, 388_TT|CC, 400_A|T, 409_A|G, 421_T|A, 430_T|A, 433_TC|CT, 442_G|T, 448_C|T, 451_A|G, 454_T|C, 467_T|C, 475_G|T,
488_T|C, 496_G|C, 499_A|G, 501_A|G, 514_CC|TT, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 556_G|T, 568_C|T, 584_T|C, 589_A|G, 596_T|A, 598_C|T, 604_C|T, 607_A|G, 610_C|T, 613_A|C, 628_T|C, 634_T|C,
637_C|T, 649_G|A, 655_A|T, 658_T|C, 664_T|A, 670_C|T, 676_C|T, 682_G|A, 691_C|T, 697_A|G, 700_C|T, 703_A|T, 709_T|C, 718_C|T, 724_725, 727_728, 732_736, 747_.|GTCTAGAAG, 757_C|T, 760_G|A,
763_T|C, 766_G|A, 790_C|T, 799_A|G, 823_T|C, 826_A|G, 829_G|A, 833_C|T, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|A, 877_A|G, 883_G|A, 886_TC|CT, 890_A|G, 898_C|T, 902_C|T, 904_T|G,
910_A|G, 931_C|T, 940_CC|TT, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 967_C|T, 973_A|G, 985_T|A, 991_T|A, 997_C|T, 1036_T|C, 1042_T|C, 1045_CC|TT, 1051_G|A, 1054_A|G, 1066_C|A, 1072_T|G, 1084_C|T,
1090_T|C, 1102_C|A, 1108_A|G, 1111_G|A, 1117_A|T, 1127_A|G, 1138_G|A, 1140_TG|CA, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_T|C, 1174_T|G, 1189_C|T, 1204_T|C, 1207_A|T, 1210_G|A,
1216_C|T, 1219_A|G, 1222_T|C, 1228_G|A, 1231_C|T, 1234_A|G, 1237_G|A, 1240_CA|TC, 1243_T|C, 1246_G|C, 1249_C|T, 1252_G|A, 1255_C|A, 1261_T|C, 1270_A|G, 1279_C|G, 1282_T|C, 1285_C|T, 1300_G|A,
1306_G|A, 1321_C|T, 1333_T|C, 1339_C|T, 1342_A|G, 1351_TT|CC, 1366_T|C, 1378_T|C, 1390_C|T, 1393_A|G, 1399_AT|GC, 1408_A|T, 1411_G|A, 1423_A|G, 1433_A|G, 1435_C|T, 1438_C|T, 1441_T|C,
1453_G|A, 1471_C|T, 1474_C|T, 1480_A|G, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1504_A|G, 1507_T|C, 1516_A|G, 1522_G|A, 1525_G|A, 1528_A|G, 1534_G|A, 1544_G|A, 1546_T|C, 1552_T|C,
1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1603_C|T, 1606_G|A, 1609_C|T, 1618_G|A, 1621_A|T, 1639_C|T, 1642_G|T, 1660_T|C, 1669_C|G, 1675_T|C, 1678_A|G, 1684_G|A, 1690_C|T,
1693_C|A, 1701_G|A, 1705_A|G, 1723_G|A, 1732_CT|TC, 1738_A|G, 1747_T|C, 1753_C|T, 1760_A|C, 1765_T|C, 1782_A|G, 1785_A|G, 1792_T|G, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1813_T|C, 1816_T|C,
1819_T|A, 1822_C|T, 1855_G|A, 1858_A|G, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1879_C|T, 1887_T|C, 1900_C|T, 1912_T|C, 1915_C|A, 1921_C|T, 1926_TT|CC, 1946_T|C, 1960_C|T, 1969_T|C, 1978_A|G,
1993_T|C, 2000_G|T, 2003_A|G, 2008_T|C, 2020_G|A, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|G, 2038_C|A, 2044_A|C, 2053_T|G, 2059_A|G, 2063_C|T, 2080_A|C, 2083_T|C, 2089_A|G, 2098_C|T, 2101_T|C,
2104_C|A, 2112_GA|CG, 2116_A|G, 2119_T|C, 2122_A|T, 2128_C|G, 2131_T|C, 2146_A|G, 2152_A|C, 2164_A|G, 2188_A|G, 2193_TG|CA, 2201_C|T, 2209_C|T, 2215_A|G, 2218_CA|TG, 2221_C|T, 2224_C|T,
2230_T|C, 2239_C|T, 2248_G|A, 2251_C|T, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2275_T|A, 2278_T|C, 2280_C|T, 2290_C|T, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_AC|GT, 2350_G|A, 2353_A|C,
2376_CA|TG, 2395_C|T, 2408_T|C, 2413_A|T, 2419_G|C, 2432_T|C, 2437_T|C, 2446_T|G, 2455_T|C, 2464_C|T, 2470_C|T, 2488_G|A, 2494_G|A, 2497_C|T, 2500_A|G, 2503_T|C, 2506_T|A, 2515_A|C, 2518_T|C,
2521_A|G, 2524_C|T, 2527_T|A, 2533_C|T, 2548_C|T, 2566_T|C, 2569_T|G, 2575_G|A, 2581_A|T, 2593_A|G, 2599_T|C, 2602_T|C, 2605_A|G, 2620_CC|TT, 2626_T|C, 2635_C|T, 2641_T|G, 2644_G|A, 2650_G|A,
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10309_C|T, 10312_G|A, 10315_T|C, 10331_C|T, 10336_A|G, 10338_TG|CC, 10342_T|C, 10348_T|C, 10351_C|T, 10355_A|G, 10358_A|G, 10363_C|T, 10365_AA|TG, 10369_10377, 10381_10382, 10385,
10391_10397, 10403_10405, 10407, 10409_10411, 10412_C|G, 10416_10417, 10421_10429, 10434_10442, 10444_10445, 10450, 10451_C|T, 10455_10460, 10464_10475, 10522, 10524_G|A, 10533_A|G,
10535_T|G, 10547_A|G, 10554_CAC|TGT, 10558_A|G, 10562_T|C, 10605_A|C, 10607_C|G, 10620_A|T, 10625_C|T, 10635_G|A, 10639_C|T, 10647_C|T, 10653_.|G, 10657_AAG|CCA, 10681_C|T
Case 3 (A.1): PP869888.1
| Target: 835 samples | Number of changes: 1168 | |
| BC: A.1.NmC2 + A.1 | BC BR: 567-568 | BC BR coord: 4833 - 4834 |
| Direction L1: >> | Initial region span: 1-396,1162-1168 | Gap history (edge excluded): 396-1162 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.35e-189 | Rec. model vs L2: 2.01e+07 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
396 |
15.083040 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
835 |
51 |
2.397856 |
-36.205091 |
1466.410183 |
2.273206e-14 |
|
|
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1162 |
0.212625 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 346_A|G, 352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 433_TC|CT, 436_G|A, 442_G|A, 448_CC|TT, 451_A|G, 455_T|C,
467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 529_T|C, 538_C|T, 547_A|C, 556_G|T, 559_C|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 598_C|T,
604_C|T, 610_C|T, 613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C,
1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1106_C|T, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G,
1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T,
1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1432_T|C, 1435_C|T,
1438_C|T, 1441_T|C, 1444_G|A, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1525_G|A, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1552_T|C,
1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1579_C|T, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A,
1696_T|C, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1781_G|A, 1785_A|G, 1789_C|G, 1792_T|G,
1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1813_T|C, 1816_TT|CG, 1819_T|G, 1822_C|T, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C,
1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A,
2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G,
2193_TG|CA, 2197_A|G, 2215_A|G, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2254_C|T, 2257_T|A, 2260_G|A, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T,
2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C,
2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C,
2605_A|G, 2611_G|A, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2728_TC|CT, 2734_G|A,
2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2809_T|C, 2812_G|A, 2827_C|T, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T,
2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G,
3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C,
3172_A|C, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C,
3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A,
3423_AT|GC, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3457_T|C, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_TC|CT, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G,
3517_A|C, 3523_TG|AA, 3529_T|C, 3535_TT|GC, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3632_C|T, 3634_G|A, 3637_C|T,
3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C,
3782_C|T, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 4105_C|G, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C,
4153_TC|CA, 4165_CA|AG, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|G, 4273_GA|AG,
4276_T|C, 4288_AC|GA, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4409_G|A, 4411_A|T,
4420_A|G, 4429_G|A, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4480_C|T, 4483_G|A, 4489_C|T, 4495_T|C, 4498_G|A, 4504_CC|TA, 4519_T|A, 4522_TC|CT, 4525_GC|AT, 4531_C|T, 4540_G|T, 4544_C|T,
4549_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4583_T|C, 4585_G|T, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4654_C|T, 4663_C|A, 4669_G|A, 4678_C|T,
4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4759_T|C, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C,
4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|G, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4867_G|A, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4885_A|G, 4888_G|A, 4894_G|A, 4897_C|G, 4900_C|T,
4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|C, 4939_G|A, 4951_G|T, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T,
5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5977_C|T, 5986_T|C, 5989_A|G, 6001_C|T, 6004_T|C,
6013_T|C, 6023_A|G, 6025_T|C, 6031_C|A, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G,
6142_T|A, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6205_C|T, 6211_C|T, 6220_T|C, 6223_G|A, 6235_C|T, 6244_T|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G,
6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6331_G|A, 6334_T|C, 6361_C|T, 6365_A|C, 6373_T|C, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6628_G|A, 6631_A|G,
6634_G|T, 6638_A|G, 6643_C|T, 6658_T|C, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G,
6796_C|T, 6799_C|T, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6835_A|G, 6841_A|T, 6844_C|T, 6847_C|T, 6850_T|C, 6869_G|A, 6874_A|T, 6876_CG|TA, 6889_C|T,
6892_G|A, 6902_C|T, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6958_TT|CG, 6964_C|T, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7003_C|T,
7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7075_C|T, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G,
7156_T|C, 7171_G|T, 7174_GC|AT, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7294_G|A, 7297_A|G, 7306_C|T,
7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7341_A|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C,
7447_C|T, 7453_G|A, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7527, 7531_.|G, 7552_C|G, 7564_A|G, 7567_C|T, 7571_A|C, 7579_TC|CT, 7597_A|T,
7612_A|C, 7624_A|G, 7634_C|A, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7717_T|C, 7721_A|C, 7726_C|A,
7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A,
7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_A|G, 7936_C|T, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G,
7987_A|G, 7990_T|C, 7993_G|A, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8048_GT|AC, 8053_A|G, 8059_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G,
8104_A|C, 8107_G|A, 8110_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8154_CT|GC, 8161_G|C, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT,
8221_G|A, 8224_AT|GC, 8245_C|T, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8329_T|C,
8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8392_C|T, 8395_G|T, 8398_G|A, 8404_C|T, 8407_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8449_A|G, 8452_C|A,
8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8536_C|T, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T,
8566_T|C, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8614_T|C, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T,
8692_G|A, 8704_T|C, 8707_A|G, 8737_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8758_C|T, 8764_A|G, 8773_C|T, 8782_G|A, 8788_C|T, 8792_C|T, 8815_A|G, 8833_A|G, 8839_T|A, 8911_G|A, 8923_C|T,
8926_A|G, 8939_C|T, 8954_A|C, 8956_GAA|ACG, 8980_T|C, 8983_G|A, 9010_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|T, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G,
9160_G|T, 9166_C|T, 9169_T|C, 9172_C|T, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A,
9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_AA|TG, 9340_A|T, 9343_G|A, 9361_G|A, 9367_A|G, 9379_GT|CC, 9385_A|G, 9388_A|G, 9391_C|T, 9397_A|T, 9403_A|G, 9406_C|T, 9424_TC|CA,
9427_A|G, 9430_A|G, 9454_A|G, 9463_T|C, 9466_TC|CT, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9559_AT|CA, 9562_A|T,
9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9616_GA|AC, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9664_C|T, 9670_C|T, 9679_C|T,
9685_C|T, 9691_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9772_C|T, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_G|A, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T,
9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9862_A|G, 9865_G|A, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T,
9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10117_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG,
10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A,
10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10279_G|A, 10281_A|G, 10287_C|T, 10297_A|G, 10303_C|T, 10315_T|C, 10330_C|T
Case 3 (A.1): PV710607.1
| Target: 835 samples | Number of changes: 883 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 849-850 | BC BR coord: 10103 - 10104 |
| Direction L1: >> | Initial region span: 1-509,852-883 | Gap history (edge excluded): 509-852 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 3.14e-184 | Rec. model vs L2: 3.96e-264 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
509 |
46.108291 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
835 |
49 |
0.396859 |
-35.987919 |
2879.975839 |
1.336384e-29 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
852 |
3.024741 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 178_T|C, 192_A|G, 218_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 283_T|C, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A,
354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 451_A|G, 455_T|C, 467_T|C, 473_ACG|GTT,
488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 931_C|T, 934_G|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G,
1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1132_T|A, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G,
1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A,
1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C,
1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1522_G|A, 1525_G|A, 1528_A|G, 1531_T|C,
1534_G|A, 1543_TG|CA, 1546_T|C, 1549_C|T, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1579_C|T, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1609_CT|TC, 1618_G|A, 1621_A|T, 1642_G|T, 1666_T|C,
1669_C|G, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|C, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A,
1781_G|A, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_AT|GC, 1841_T|C, 1843_G|C, 1852_G|A, 1855_G|A,
1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C,
2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2077_C|T, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A,
2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A,
2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T,
2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T,
2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A,
3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3178_C|T, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C,
3220_T|C, 3223_C|T, 3226_T|G, 3229_A|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3272_G|A, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C,
3319_C|A, 3321_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T,
3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G,
3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C,
3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C,
3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3844_G|A, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3928_T|C, 3931_T|C, 3934_G|A,
3947_AC|GT, 3953_T|C, 3955_G|A, 3959_C|T, 3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T,
4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4090_G|A, 4105_C|G, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C,
4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4270_T|C, 4273_GA|AG, 4276_T|C, 4289_C|A, 4306_T|C,
4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4408_GG|AA, 4411_A|T, 4420_A|G, 4429_G|A,
4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|G, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T,
4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C,
4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G,
5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7078_C|T, 7085_C|T,
7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T, 7247_T|A,
7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G,
7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7696_C|T, 7699_G|A,
7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7732_T|C, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A,
7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7873_C|T, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7924_A|G, 7939_A|G,
7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8048_G|A, 8050_G|A, 8053_A|G, 8059_C|T, 8063_C|T,
8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|C, 8167_C|G,
8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C,
8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C,
8404_C|T, 8407_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8443_C|T, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8500_G|A, 9485_T|C,
9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9511_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A,
9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|C, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9749_A|G, 9754_T|C,
9762_A|G, 9772_C|T, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_G|A, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9880_C|T,
9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9919_C|A, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9985_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G,
10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10116_A|G, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10144_A|G, 10148_A|C, 10153_TG|CA,
10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C,
10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C
Case 3 (A.1): PV710587.1
| Target: 835 samples | Number of changes: 909 | |
| BC: A.1.NmC2 + A.1.NmC1 | BC BR: 875-876 | BC BR coord: 10103 - 10104 |
| Direction L1: >> | Initial region span: 1-530,878-909 | Gap history (edge excluded): 530-878 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 3.16e-184 | Rec. model vs L2: 1.19e-306 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
530 |
52.430835 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
878 |
3.024741 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 178_T|C, 192_A|G, 218_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 283_T|C, 295_A|G, 301_C|T, 304_A|T, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G, 352_G|A,
354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 440_G|A, 442_G|A, 448_CC|TT, 451_A|G, 455_T|C, 467_T|C, 473_ACG|GTT,
488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 556_G|T, 568_C|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 598_C|T, 604_C|T, 610_C|T, 613_A|C, 625_C|T,
628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 775_C|T,
781_T|C, 784_G|A, 799_A|G, 802_A|G, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 886_TC|CT, 890_A|G, 904_T|G,
910_A|G, 931_C|T, 934_G|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 982_C|T, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G,
1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1171_TC|CA, 1174_T|C, 1183_T|C, 1207_A|T, 1217_C|T, 1219_A|G,
1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G, 1330_C|T, 1333_T|C,
1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1468_A|G, 1474_C|T, 1482_TC|CT, 1491_T|C,
1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1522_G|A, 1525_G|A, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1546_T|C, 1549_C|T, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A,
1579_C|T, 1585_A|T, 1591_C|T, 1593_G|A, 1606_G|A, 1609_CT|TC, 1618_G|A, 1621_A|T, 1642_G|T, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1701_G|A, 1705_AC|GT, 1708_G|A,
1714_G|C, 1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1781_G|A, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G,
1810_A|G, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_AT|GC, 1841_T|C, 1843_G|C, 1852_G|A, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1915_C|A, 1926_TT|CA, 1936_G|A,
1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|C, 1984_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2077_C|T,
2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G,
2200_C|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A,
2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T,
2467_C|A, 2470_C|A, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|G, 3040_C|T, 3043_T|A, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3094_C|T, 3098_T|C, 3100_G|A,
3104_G|A, 3107_T|C, 3109_A|G, 3112_T|C, 3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3178_C|T, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G,
3229_A|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_C|A, 3321_A|G, 3334_G|T, 3337_A|G,
3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G,
3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3607_A|G,
3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C,
3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3748_T|C, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G,
3832_A|C, 3844_G|A, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|G, 3898_T|C, 3901_C|T, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3955_G|A, 3959_C|T,
3961_C|G, 3973_G|A, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C,
4087_T|C, 4090_G|A, 4105_C|G, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T,
4219_A|C, 4228_GC|CT, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4270_T|C, 4273_GA|AG, 4276_T|C, 4289_C|A, 4306_T|C, 4309_C|T, 4324_G|A, 4330_G|A, 4333_A|T,
4336_G|A, 4341_A|G, 4351_T|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|G, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A,
4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C,
5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5047_C|T, 5059_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 7039_T|C, 7046_T|C,
7063_A|G, 7066_C|T, 7069_A|G, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|C, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C,
7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7666_A|G,
7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7696_C|T, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7732_T|C, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC,
7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7873_C|T, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T,
7900_T|C, 7915_G|A, 7918_A|G, 7920_AG|GA, 7924_A|G, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T,
8041_A|T, 8044_A|G, 8048_G|A, 8050_G|A, 8053_A|G, 8059_C|T, 8063_C|T, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A,
8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8152_.|A, 8155, 8161_G|C, 8167_C|G, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8221_G|A, 8224_A|G, 8245_C|T, 8251_A|G,
8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8317_C|T, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A,
8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8407_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8764_A|G, 8773_C|T,
8782_G|A, 8788_C|T, 8792_C|T, 8815_A|G, 8830_A|G, 8833_A|G, 8836_T|C, 8839_T|A, 8848_C|T, 8851_A|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8954_A|C, 8956_GAA|ACG,
8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G,
9157_A|G, 9160_G|T, 9166_C|T, 9169_T|C, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9524_G|A, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C,
9559_AT|CA, 9562_A|G, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|C, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T,
9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9772_C|T, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_G|A, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T,
9850_CA|GG, 9856_G|C, 9859_A|G, 9862_A|G, 9865_G|A, 9880_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9919_C|A, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9985_T|C, 9988_C|T,
9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10048_A|G, 10051_G|A, 10066_G|A, 10096_A|G, 10111_C|T, 10116_A|G, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG,
10144_A|G, 10148_A|C, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A,
10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C
Case 3 (A.1): PV710596.1
| Target: 835 samples | Number of changes: 1413 | |
| BC: A.1.NmC1 + A.1 | BC BR: 52-53 | BC BR coord: 552 - 553 |
| Direction L1: >> | Initial region span: 1-34,1410-1413 | Gap history (edge excluded): 34-1410 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 1.88e+12 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
34 |
2.30746 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1410 |
2.087133 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 116_A|C, 119_A|C, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|C, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G,
352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 436_G|A, 440_G|A, 442_G|A, 448_CC|TT, 451_A|G, 455_T|C, 467_T|C,
473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 598_C|T, 604_C|T, 610_C|T, 613_A|C,
628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 769_T|C,
775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 887_C|T, 890_A|G, 904_T|G,
910_A|G, 931_C|T, 934_G|C, 937_T|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G,
1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1195_C|T, 1207_A|T, 1210_G|A,
1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G,
1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1474_C|T, 1482_TC|CT, 1491_T|C,
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9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT,
9334_A|G, 9336_A|T, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G,
9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T,
9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9691_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C,
9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_G|A, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9862_A|G, 9865_G|A, 9880_C|T, 9883_C|T, 9898_A|G,
9904_T|A, 9910_C|T, 9916_A|G, 9919_C|T, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG,
10066_G|A, 10096_A|G, 10111_C|T, 10126_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A,
10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C,
10330_C|T, 10336_A|G, 10338_TG|CC, 10348_T|C, 10351_C|T, 10355_A|G, 10361_A|G, 10364_T|C, 10367_C|G, 10369_GG|AC, 10374_A|C
Case 3 (A.1): PV710593.1
| Target: 835 samples | Number of changes: 1427 | |
| BC: A.1.NmC1 + A.1 | BC BR: 52-53 | BC BR coord: 552 - 553 |
| Direction L1: >> | Initial region span: 1-34,1424-1427 | Gap history (edge excluded): 34-1424 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 1.88e+12 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
34 |
2.30746 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1424 |
2.087133 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 116_A|C, 119_A|C, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|C, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G,
352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 436_G|A, 440_G|A, 442_G|A, 448_CC|TT, 451_A|G, 455_T|C, 467_T|C,
473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 598_C|T, 604_C|T, 610_C|T, 613_A|C,
628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 769_T|C,
775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 887_C|T, 890_A|G, 900_A|G,
904_T|G, 910_A|G, 931_C|T, 934_G|C, 937_T|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G,
1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1195_C|T, 1207_A|T,
1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T,
1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1474_C|T, 1482_TC|CT,
1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1525_G|A, 1528_A|G, 1531_T|C, 1534_G|A, 1540_C|T, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T,
1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1696_T|C, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A,
1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1813_T|C,
1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1894_C|T, 1915_C|A, 1926_TT|CA, 1936_G|A,
1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|T, 1984_T|C, 1993_T|C, 2003_A|G, 2008_T|C, 2011_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T,
2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_GA|CC, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G,
2193_TG|CA, 2197_A|G, 2209_C|T, 2215_A|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2263_T|C, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C,
2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC,
2437_T|C, 2455_T|C, 2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A,
2581_A|T, 2596_C|T, 2605_A|G, 2611_G|A, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2729_C|T,
2734_G|A, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2827_C|T, 2833_G|A, 2836_G|A, 2863_A|G,
2878_A|G, 2881_C|T, 2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A,
3019_C|T, 3025_A|G, 3031_T|C, 3034_C|A, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|T, 3112_T|C,
3121_G|A, 3127_G|A, 3133_A|G, 3142_T|C, 3172_A|C, 3178_C|T, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C,
3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T,
3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3445_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C,
3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3566_G|A, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G,
3619_CT|TC, 3622_G|A, 3628_A|C, 3632_C|T, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T,
3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A,
3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|A, 3898_T|C, 3901_C|T, 3904_C|T, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3968_C|T, 3982_C|G, 3985_T|A,
4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4089_T|A, 4103_C|T,
4105_C|G, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_G|C,
4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4276_T|C, 4289_C|A, 4306_T|C, 4309_C|T, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A,
4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4409_GCA|ATT, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4495_T|C,
4498_G|A, 4504_CC|TA, 4523_C|T, 4526_C|T, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G,
4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4654_C|T, 4663_C|A, 4666_CT|TC, 4669_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4714_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC,
4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4759_T|C, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|G, 4837_C|T,
4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4939_G|A, 4954_T|G,
4957_C|T, 4960_T|C, 4969_T|C, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A,
5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T,
5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5269_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T,
5326_T|C, 5335_C|T, 5338_C|T, 5341_C|T, 5344_G|A, 5346_G|A, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C,
5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C,
5602_A|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5752_C|T, 5760_G|A, 5773_G|A, 5776_A|T,
5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5818_T|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5932_C|A, 5935_A|T,
5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5980_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A,
6073_C|T, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6139_C|T, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C,
6211_C|T, 6220_T|C, 6223_G|A, 6244_TT|AC, 6250_G|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C,
6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6489_CT|TC,
6493_A|G, 6508_AA|GG, 6517_C|T, 6520_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G,
6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G,
6796_CC|TT, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6835_A|G, 6841_A|T, 6844_C|T, 6847_C|T, 6850_T|C, 6853_T|A, 6869_G|A, 6874_A|T, 6876_C|T,
6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6948_C|T, 6958_TT|CG, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7000_T|C,
7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|T, 7138_A|C,
7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T,
7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C,
7447_C|T, 7453_G|A, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7552_C|G, 7579_T|C, 7597_A|T, 7612_A|C, 7624_A|G, 7642_C|A, 7651_A|G, 7654_A|G,
7657_TT|CC, 7666_A|G, 7669_C|T, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A,
7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7829_T|C, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T,
7891_A|T, 7894_C|T, 7900_T|C, 7909_T|C, 7912_T|A, 7915_G|A, 7918_A|G, 7920_AG|GA, 7936_C|T, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G,
7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8048_G|A, 8053_A|G, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A,
8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8154_CT|GC, 8161_G|C, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8224_A|G, 8245_C|T,
8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A,
8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA,
8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8539_C|T, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8574_A|G,
8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8614_T|C, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C,
8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8758_C|T, 8764_A|G, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8872_T|C, 8874_A|T,
8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G,
9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A,
9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_A|T, 9340_A|T, 9343_G|A, 9361_G|A,
9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9514_A|G,
9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A,
9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9691_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G,
9799_G|A, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9862_A|G, 9865_G|A, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9919_C|T, 9922_T|C,
9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10066_G|A, 10096_A|G, 10111_C|T, 10126_C|T,
10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C,
10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C, 10330_C|T, 10336_A|G, 10338_TG|CC, 10348_T|C,
10351_C|T, 10355_A|G, 10361_A|G, 10364_T|C, 10367_C|G, 10369_GG|AC, 10374_A|C
Case 3 (A.1): PV710595.1
| Target: 835 samples | Number of changes: 1404 | |
| BC: A.1 + A.1.NmC2 + A.1 | BC BR: 302-303, 1400-1401 | BC BR coord: 2265 - 2266, 10363 - 10364 |
| Direction L1: << | Initial region span: 1-3,1076-1400,1401-1404 | Gap history (edge excluded): 3-1401 -> 3-1076 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 3.01e-18 | |
| Rec. model vs L1: 2.84e+14 | Rec. model vs L2: 1.23e-153 | |
| Flags: Model_2BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
3 |
0.799365 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1076 |
38.511947 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1401 |
0.000000 |
-454.253414 |
3316.506827 |
9.479136e-195 |
|
|
|
| A.1 |
835 |
1401 |
0.000000 |
-87.842653 |
2583.685306 |
1.278232e-35 |
|
|
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1401 |
2.087133 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 112_C|A, 116_A|C, 119_A|C, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|C, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G,
346_A|G, 352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 436_G|A, 440_G|A, 442_G|A, 448_CC|TT, 451_A|G, 455_T|C,
467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 598_C|T, 604_C|T, 610_C|T,
613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A,
769_T|C, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 887_C|T, 890_A|G,
904_T|G, 910_A|G, 931_C|T, 934_G|C, 937_T|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G,
1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1195_C|T, 1207_A|T,
1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T,
1327_A|G, 1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1426_T|C, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1474_C|T,
1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1525_G|A, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T,
1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1681_T|C, 1684_G|A, 1690_C|T, 1693_C|A, 1696_T|C, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T,
1723_G|A, 1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G,
1813_T|C, 1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1894_C|T, 1915_C|A, 1926_TT|CA,
1936_G|A, 1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|T, 1984_T|C, 1993_T|C, 2003_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C,
2077_C|T, 2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA,
2197_A|G, 2209_C|T, 2215_A|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A,
2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T,
2470_C|A, 2488_G|A, 2497_C|T, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2605_A|G, 2611_G|A, 2623_A|G,
2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2729_C|T, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A,
2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2827_C|T, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2899_C|G, 2908_T|C, 2920_G|A, 2962_C|T, 2980_C|T,
2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|A, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3100_G|A, 3104_G|A,
3109_A|T, 3112_T|C, 3127_G|A, 3142_T|C, 3172_A|C, 3178_C|T, 3187_A|G, 3193_C|T, 3196_A|G, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G,
3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C,
3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3445_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C,
3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3566_G|A, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC,
3622_G|A, 3628_A|C, 3632_C|T, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T,
3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A,
3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|A, 3898_T|C, 3901_C|T, 3904_C|T, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3968_C|T, 3982_C|G, 3985_T|A,
4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4089_T|A, 4103_C|T,
4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_G|C, 4237_A|G,
4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4276_T|C, 4289_C|A, 4306_T|C, 4309_C|T, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A,
4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4409_GCA|ATT, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4495_T|C, 4498_G|A,
4504_CC|TA, 4523_C|T, 4526_C|T, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T,
4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4654_C|T, 4663_C|A, 4666_CT|TC, 4669_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4714_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G,
4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4759_T|C, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|G, 4837_C|T, 4852_G|A,
4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4939_G|A, 4954_T|G, 4957_C|T,
4960_T|C, 4969_T|C, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G,
5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A,
5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5269_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C,
5335_C|T, 5338_C|T, 5341_C|T, 5344_G|A, 5346_G|A, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A,
5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T,
5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A,
5794_C|T, 5797_T|C, 5800_A|C, 5818_T|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C,
5968_G|A, 5971_A|G, 5974_T|C, 5980_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6073_C|T, 6085_G|A,
6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6139_C|T, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C,
6223_G|A, 6244_TT|AC, 6250_G|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G,
6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6489_CT|TC, 6493_A|G, 6508_AA|GG,
6517_C|T, 6520_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T,
6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G,
6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6835_A|G, 6841_A|T, 6844_C|T, 6847_C|T, 6850_T|C, 6853_T|A, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G,
6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6948_C|T, 6958_TT|CG, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7000_T|C, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T,
7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|T, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T,
7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T,
7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7463_T|C,
7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7552_C|G, 7579_T|C, 7597_A|T, 7612_A|C, 7624_A|G, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7669_C|T,
7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A,
7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7829_T|C, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7894_C|T, 7900_T|C,
7909_T|C, 7912_T|A, 7915_G|A, 7918_A|G, 7920_AG|GA, 7936_C|T, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G,
8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8048_G|A, 8053_A|G, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C,
8140_A|T, 8143_A|G, 8150_C|T, 8154_CT|GC, 8161_G|C, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T,
8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A,
8383_A|C, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A,
8488_G|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8539_C|T, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A,
8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8614_T|C, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G,
8749_T|C, 8755_G|A, 8758_C|T, 8764_A|G, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G,
8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A,
9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A,
9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_A|T, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T,
9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C,
9556_T|C, 9559_AT|CA, 9562_A|G, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T,
9679_C|T, 9691_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_G|A, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T,
9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9862_A|G, 9865_G|A, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9919_C|T, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C,
9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10066_G|A, 10096_A|G, 10111_C|T, 10126_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10153_TG|CA,
10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C,
10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C, 10330_C|T, 10336_A|G, 10338_TG|CC, 10348_T|C, 10351_C|T, 10355_A|G, 10361_A|G, 10364_T|C, 10367_C|G,
10369_GG|AC, 10374_A|C
Case 3 (A.1): PV710597.1
| Target: 835 samples | Number of changes: 1428 | |
| BC: A.1 + A.1.NmC2 + A.1 | BC BR: 387-388, 1424-1425 | BC BR coord: 2895 - 2896, 10363 - 10364 |
| Direction L1: << | Initial region span: 1-14,1100-1424,1425-1428 | Gap history (edge excluded): 14-1425 -> 14-1100 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 6.53e-49 | |
| Rec. model vs L1: 1.96e+13 | Rec. model vs L2: 5.24e-163 | |
| Flags: Model_2BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
15 |
0.465183 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
1100 |
36.39528 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
1425 |
0.00000 |
-484.242927 |
3214.485855 |
2.503524e-208 |
|
|
|
| A.1 |
835 |
1425 |
0.00000 |
-83.695622 |
2413.391243 |
2.265721e-34 |
|
|
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1425 |
2.087133 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 116_A|C, 119_A|C, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 268_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|C, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G,
346_A|G, 352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 436_G|A, 440_G|A, 442_G|A, 448_CC|TT, 451_A|G, 455_T|C,
467_T|C, 473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 598_C|T, 604_C|T, 610_C|T,
613_A|C, 628_T|C, 640_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C,
766_G|A, 769_T|C, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 887_C|T,
890_A|G, 904_T|G, 910_A|G, 931_C|T, 934_G|C, 937_T|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A,
1054_A|G, 1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1144_G|A, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C,
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8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8614_T|C, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C,
8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8758_C|T, 8764_A|G, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G,
8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C,
9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G,
9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_A|T, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC,
9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9514_A|G, 9532_T|C, 9538_A|G,
9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T,
9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9691_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_G|A, 9817_G|A,
9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9862_A|G, 9865_G|A, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9919_C|T, 9922_T|C, 9946_T|C, 9955_A|G,
9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10066_G|A, 10096_A|G, 10111_C|T, 10126_C|T, 10129_G|A, 10132_A|G,
10134_T|C, 10141_AA|GG, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|G,
10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C, 10330_C|T, 10336_A|G, 10338_TG|CC, 10348_T|C, 10351_C|T, 10355_A|G,
10361_A|G, 10364_T|C, 10367_C|G, 10369_GG|AC, 10374_A|C
Case 3 (A.1): PV710599.1
| Target: 835 samples | Number of changes: 1402 | |
| BC: A.1.NmC1 + A.1 | BC BR: 52-53 | BC BR coord: 552 - 553 |
| Direction L1: >> | Initial region span: 1-34,1399-1402 | Gap history (edge excluded): 34-1399 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 1.88e+12 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
34 |
2.30746 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1399 |
2.087133 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 116_A|C, 119_A|C, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|C, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G,
352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 436_G|A, 440_G|A, 442_G|A, 448_CC|TT, 451_A|G, 455_T|C, 467_T|C,
473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 598_C|T, 604_C|T, 610_C|T, 613_A|C,
628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 769_T|C,
775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 887_C|T, 890_A|G, 904_T|G,
910_A|G, 931_C|T, 934_G|C, 937_T|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G,
1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1195_C|T, 1207_A|T, 1210_G|A,
1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G,
1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1474_C|T, 1482_TC|CT, 1491_T|C,
1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1519_C|T, 1525_G|A, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T,
1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1696_T|C, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A,
1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1813_T|C,
1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1894_C|T, 1915_C|A, 1926_TT|CA, 1936_G|A,
1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|T, 1984_T|C, 1993_T|C, 2003_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T,
2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G,
2209_C|T, 2215_A|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A,
2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2470_C|A,
2488_G|A, 2497_C|T, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2605_A|G, 2611_G|A, 2623_A|G, 2626_T|C,
2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2729_C|T, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T,
2782_T|C, 2785_G|A, 2788_G|A, 2794_T|C, 2809_T|C, 2812_G|A, 2827_C|T, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2887_T|C, 2899_C|G, 2908_T|C, 2920_G|A, 2962_C|T, 2980_C|T, 2983_A|G,
2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|A, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3100_G|A, 3104_G|A, 3109_A|T,
3112_T|C, 3127_G|A, 3142_T|C, 3172_A|C, 3178_C|T, 3187_A|G, 3193_C|T, 3196_A|G, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G,
3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA,
3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3445_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A,
3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3566_G|A, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A,
3628_A|C, 3632_C|T, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G,
3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T,
3883_T|C, 3886_A|G, 3889_T|C, 3895_T|A, 3898_T|C, 3901_C|T, 3904_C|T, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3968_C|T, 3982_C|G, 3985_T|A, 4006_CG|AA,
4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4089_T|A, 4103_C|T, 4120_CT|AC,
4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_G|C, 4237_A|G, 4240_G|A, 4246_T|C,
4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4276_T|C, 4289_C|A, 4306_T|C, 4309_C|T, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T,
4387_G|A, 4393_C|T, 4399_C|T, 4409_GCA|ATT, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4495_T|C, 4498_G|A, 4504_CC|TA, 4523_C|T,
4526_C|T, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C,
4645_T|C, 4654_C|T, 4663_C|A, 4666_CT|TC, 4669_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4714_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C,
4753_C|T, 4756_G|A, 4759_T|C, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|G, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A,
4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4984_A|T,
4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A,
5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A,
5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5269_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5335_C|T, 5338_C|T, 5341_C|T,
5344_G|A, 5346_G|A, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A,
5473_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5614_C|T, 5626_G|T, 5638_CC|TT,
5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C,
5818_T|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C,
5980_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6073_C|T, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T,
6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6139_C|T, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6244_TT|AC, 6250_G|A,
6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C,
6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6489_CT|TC, 6493_A|G, 6508_AA|GG, 6517_C|T, 6520_C|T, 6523_T|C,
6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T,
6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G,
6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6835_A|G, 6841_A|T, 6844_C|T, 6847_C|T, 6850_T|C, 6853_T|A, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G,
6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6948_C|T, 6958_TT|CG, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7000_T|C, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C,
7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|T, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G,
7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C,
7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7463_T|C, 7480_C|G, 7483_A|G,
7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7552_C|G, 7579_T|C, 7597_A|T, 7612_A|C, 7624_A|G, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7669_C|T, 7675_G|A, 7681_A|G,
7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C,
7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7829_T|C, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7894_C|T, 7900_T|C, 7909_T|C, 7912_T|A,
7915_G|A, 7918_A|G, 7920_AG|GA, 7936_C|T, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T,
8041_A|T, 8044_A|G, 8048_G|A, 8053_A|G, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G,
8150_C|T, 8154_CT|GC, 8161_G|C, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T,
8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8392_C|T,
8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8500_G|A,
8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8539_C|T, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T,
8605_T|C, 8608_T|G, 8611_T|G, 8614_T|C, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A,
8758_C|T, 8764_A|G, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A,
8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C,
9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G,
9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_A|T, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C,
9427_A|G, 9430_A|G, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C,
9559_AT|CA, 9562_A|G, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T,
9691_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_G|A, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A,
9844_C|T, 9850_CA|GG, 9856_G|C, 9862_A|G, 9865_G|A, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9919_C|T, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T,
9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10066_G|A, 10096_A|G, 10111_C|T, 10126_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10153_TG|CA, 10162_T|C,
10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G,
10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C, 10330_C|T, 10336_A|G, 10338_TG|CC, 10348_T|C, 10351_C|T, 10355_A|G, 10361_A|G, 10364_T|C, 10367_C|G,
10369_GG|AC, 10374_A|C
Case 3 (A.1): PV710600.1
| Target: 835 samples | Number of changes: 1421 | |
| BC: A.1.NmC1 + A.1 | BC BR: 52-53 | BC BR coord: 552 - 553 |
| Direction L1: >> | Initial region span: 1-34,1418-1421 | Gap history (edge excluded): 34-1418 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 1.88e+12 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
34 |
2.30746 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1418 |
2.087133 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 116_A|C, 119_A|C, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|C, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G,
352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 436_G|A, 440_G|A, 442_G|A, 448_CC|TT, 451_A|G, 455_T|C, 467_T|C,
473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 598_C|T, 604_C|T, 610_C|T, 613_A|C,
628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 769_T|C,
775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 887_C|T, 890_A|G, 904_T|G,
910_A|G, 931_C|T, 934_G|C, 937_T|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G,
1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1195_C|T, 1207_A|T, 1210_G|A,
1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G,
1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1474_C|T, 1482_TC|CT, 1491_T|C,
1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1525_G|A, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A,
1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1696_T|C, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1732_C|T,
1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1813_T|C,
1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1894_C|T, 1915_C|A, 1926_TT|CA, 1936_G|A,
1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|T, 1984_T|C, 1993_T|C, 2003_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T,
2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_GA|CC, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA,
2197_A|G, 2209_C|T, 2215_A|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2266_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C,
2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C,
2464_C|T, 2467_C|A, 2470_C|A, 2488_G|A, 2497_C|T, 2500_A|G, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T,
2605_A|G, 2611_G|A, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2704_G|A, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2729_C|T, 2734_G|A, 2737_TG|CA,
2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2791_T|C, 2794_T|C, 2809_T|C, 2812_G|A, 2827_C|T, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T,
2894_C|A, 2896_G|A, 2899_C|G, 2908_T|C, 2920_G|A, 2932_G|A, 2947_A|C, 2950_C|A, 2962_C|T, 2974_A|G, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3013_G|A, 3019_C|T, 3025_A|G,
3031_T|C, 3034_C|A, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3070_A|G, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3098_T|C, 3100_G|A, 3104_G|A, 3107_T|C, 3109_A|T, 3112_T|C, 3121_G|A, 3127_G|A,
3133_A|G, 3142_T|C, 3172_A|C, 3178_C|T, 3187_A|G, 3193_C|T, 3196_A|G, 3199_C|T, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G,
3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA,
3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3445_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A,
3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3566_G|A, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A,
3628_A|C, 3632_C|T, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G,
3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T,
3883_T|C, 3886_A|G, 3889_T|C, 3895_T|A, 3898_T|C, 3901_C|T, 3904_C|T, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3968_C|T, 3982_C|G, 3985_T|A, 4006_CG|AA,
4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4089_T|A, 4103_C|T, 4105_C|G,
4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_G|C, 4237_A|G,
4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A, 4273_GA|AG, 4276_T|C, 4289_C|A, 4306_T|C, 4309_C|T, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A,
4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T, 4409_GCA|ATT, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4495_T|C, 4498_G|A,
4504_CC|TA, 4523_C|T, 4526_C|T, 4531_C|T, 4540_G|C, 4544_C|T, 4549_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T,
4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4654_C|T, 4663_C|A, 4666_CT|TC, 4669_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4714_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G,
4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4759_T|C, 4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|G, 4837_C|T, 4852_G|A,
4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C, 4888_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4939_G|A, 4954_T|G, 4957_C|T,
4960_T|C, 4969_T|C, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C, 4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G,
5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A, 5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A,
5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T, 5257_C|T, 5260_G|A, 5266_T|C, 5269_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C,
5335_C|T, 5338_C|T, 5341_C|T, 5344_G|A, 5346_G|A, 5359_T|C, 5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A,
5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5485_A|G, 5488_G|A, 5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T,
5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C, 5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A,
5794_C|T, 5797_T|C, 5800_A|C, 5818_T|C, 5821_A|G, 5833_C|T, 5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C,
5968_G|A, 5971_A|G, 5974_T|C, 5980_C|T, 5986_T|C, 5992_C|T, 6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6073_C|T, 6085_G|A,
6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A, 6124_T|A, 6127_A|G, 6139_C|T, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C,
6223_G|A, 6244_TT|AC, 6250_G|A, 6259_T|C, 6262_T|A, 6271_T|C, 6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G,
6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G, 6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6489_CT|TC, 6493_A|G, 6508_AA|GG,
6517_C|T, 6520_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G, 6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T,
6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G, 6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G,
6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G, 6832_C|T, 6835_A|G, 6841_A|T, 6844_C|T, 6847_C|T, 6850_T|C, 6853_T|A, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G,
6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A, 6940_C|T, 6943_A|G, 6948_C|T, 6958_TT|CG, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7000_T|C, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T,
7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T, 7069_A|G, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|T, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T,
7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T, 7228_G|A, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T,
7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C, 7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7463_T|C,
7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G, 7501_G|A, 7510_A|C, 7519_C|T, 7552_C|G, 7579_TC|CT, 7597_A|T, 7612_A|C, 7624_A|G, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G,
7669_C|T, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A, 7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T,
7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A, 7822_A|G, 7825_G|A, 7829_T|C, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7894_C|T,
7900_T|C, 7909_T|C, 7912_T|A, 7915_G|A, 7918_A|G, 7920_AG|GA, 7936_C|T, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G,
8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8048_G|A, 8053_A|G, 8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A,
8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8154_CT|GC, 8161_G|C, 8167_C|A, 8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A,
8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G, 8296_C|T, 8299_C|T, 8305_T|G, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G,
8380_T|A, 8383_A|C, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A, 8434_T|G, 8437_G|A, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G,
8485_G|A, 8488_G|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G, 8536_C|T, 8539_C|T, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8574_A|G, 8584_A|G, 8590_G|A,
8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8614_T|C, 8617_A|G, 8620_TC|CT, 8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A,
8746_A|G, 8749_T|C, 8755_G|A, 8758_C|T, 8764_A|G, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT, 8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T,
8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G, 8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C,
9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A,
9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T, 9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_A|T, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T,
9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9454_A|G, 9463_T|C, 9466_TC|CT, 9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G,
9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A, 9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T,
9670_C|T, 9679_C|T, 9691_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A, 9749_A|G, 9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_G|A, 9817_G|A, 9823_G|A, 9835_A|G,
9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9862_A|G, 9865_G|A, 9880_C|T, 9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9919_C|T, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T,
9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C, 10030_A|G, 10036_GA|TG, 10066_G|A, 10096_A|G, 10111_C|T, 10126_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG,
10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T, 10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C,
10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G, 10297_A|G, 10309_C|T, 10315_T|C, 10330_C|T, 10336_A|G, 10338_TG|CC, 10348_T|C, 10351_C|T, 10355_A|G, 10361_A|G, 10364_T|C,
10367_C|G, 10369_GG|AC, 10374_A|C
Case 3 (A.1): PV710602.1
| Target: 835 samples | Number of changes: 1402 | |
| BC: A.1.NmC1 + A.1 | BC BR: 52-53 | BC BR coord: 552 - 553 |
| Direction L1: >> | Initial region span: 1-34,1399-1402 | Gap history (edge excluded): 34-1399 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 1.88e+12 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
34 |
2.30746 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1399 |
2.087133 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 116_A|C, 119_A|C, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|C, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G,
352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 436_G|A, 440_G|A, 442_G|A, 448_CC|TT, 451_A|G, 455_T|C, 467_T|C,
473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 598_C|T, 604_C|T, 610_C|T, 613_A|C,
628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 769_T|C,
775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 887_C|T, 890_A|G, 904_T|G,
910_A|G, 931_C|T, 934_G|C, 937_T|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G,
1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1195_C|T, 1207_A|T, 1210_G|A,
1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G,
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1957_C|A, 1975_G|A, 1978_A|G, 1981_A|T, 1984_T|C, 1993_T|C, 2003_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C,
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2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T,
2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2470_C|A, 2488_G|A, 2497_C|T,
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2998_T|C, 3002_T|C, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|A, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3100_G|A, 3104_G|A, 3109_A|T, 3112_T|C, 3127_G|A,
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3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3445_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G,
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3739_T|C, 3745_C|T, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C,
3895_T|A, 3898_T|C, 3901_C|T, 3904_C|T, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3968_C|T, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA,
4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4089_T|A, 4103_C|T, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C,
4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_G|C, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T,
4267_T|A, 4273_GA|AG, 4276_T|C, 4289_C|A, 4306_T|C, 4309_C|T, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T,
4409_GCA|ATT, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4495_T|C, 4498_G|A, 4504_CC|TA, 4523_C|T, 4526_C|T, 4531_C|T, 4540_G|C,
4544_C|T, 4549_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4654_C|T, 4663_C|A,
4666_CT|TC, 4669_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4714_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4759_T|C,
4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|G, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C,
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4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A,
5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T,
5257_C|T, 5260_G|A, 5266_T|C, 5269_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5335_C|T, 5338_C|T, 5341_C|T, 5344_G|A, 5346_G|A, 5359_T|C,
5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5485_A|G, 5488_G|A,
5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C,
5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5818_T|C, 5821_A|G, 5833_C|T,
5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5980_C|T, 5986_T|C, 5992_C|T,
6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6073_C|T, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A,
6124_T|A, 6127_A|G, 6139_C|T, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6244_TT|AC, 6250_G|A, 6259_T|C, 6262_T|A, 6271_T|C,
6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G,
6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6489_CT|TC, 6493_A|G, 6508_AA|GG, 6517_C|T, 6520_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G,
6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G,
6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G,
6832_C|T, 6835_A|G, 6841_A|T, 6844_C|T, 6847_C|T, 6850_T|C, 6853_T|A, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A,
6940_C|T, 6943_A|G, 6948_C|T, 6958_TT|CG, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7000_T|C, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T,
7069_A|G, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|T, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T,
7228_G|A, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C,
7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G,
7501_G|A, 7510_A|C, 7519_C|T, 7552_C|G, 7579_T|C, 7597_A|T, 7612_A|C, 7624_A|G, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7669_C|T, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A,
7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A,
7822_A|G, 7825_G|A, 7829_T|C, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7894_C|T, 7900_T|C, 7909_T|C, 7912_T|A, 7915_G|A, 7918_A|G, 7920_AG|GA,
7936_C|T, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8048_G|A, 8053_A|G,
8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8154_CT|GC, 8161_G|C, 8167_C|A,
8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G,
8296_C|T, 8299_C|T, 8305_T|G, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A,
8434_T|G, 8437_G|A, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G,
8536_C|T, 8539_C|T, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8614_T|C, 8617_A|G, 8620_TC|CT,
8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8758_C|T, 8764_A|G, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT,
8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G,
8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9046_G|A, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T,
9166_C|T, 9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T,
9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_A|T, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9454_A|G, 9463_T|C, 9466_TC|CT,
9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A,
9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9691_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A,
9749_A|G, 9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_G|A, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9862_A|G, 9865_G|A, 9880_C|T,
9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9919_C|T, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C,
10030_A|G, 10036_GA|TG, 10066_G|A, 10096_A|G, 10111_C|T, 10126_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T,
10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G,
10297_A|G, 10309_C|T, 10315_T|C, 10330_C|T, 10336_A|G, 10338_TG|CC, 10348_T|C, 10351_C|T, 10355_A|G, 10361_A|G, 10364_T|C, 10367_C|G, 10369_GG|AC, 10374_A|C
Case 3 (A.1): PV710603.1
| Target: 835 samples | Number of changes: 1400 | |
| BC: A.1.NmC1 + A.1 | BC BR: 52-53 | BC BR coord: 552 - 553 |
| Direction L1: >> | Initial region span: 1-34,1397-1400 | Gap history (edge excluded): 34-1397 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 1.88e+12 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
34 |
2.30746 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1397 |
2.087133 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 116_A|C, 119_A|C, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|C, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G,
352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 436_G|A, 440_G|A, 442_G|A, 448_CC|TT, 451_A|G, 455_T|C, 467_T|C,
473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 598_C|T, 604_C|T, 610_C|T, 613_A|C,
628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A, 769_T|C,
775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 887_C|T, 890_A|G, 904_T|G,
910_A|G, 931_C|T, 934_G|C, 937_T|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G, 1072_T|G,
1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1195_C|T, 1207_A|T, 1210_G|A,
1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T, 1327_A|G,
1330_C|T, 1333_T|C, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1474_C|T, 1482_TC|CT, 1491_T|C,
1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1525_G|A, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T, 1591_C|T, 1593_G|A,
1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1696_T|C, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A, 1729_C|A, 1738_A|G,
1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1813_T|C, 1816_TT|CG,
1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1894_C|T, 1915_C|A, 1926_TT|CA, 1936_G|A, 1942_A|G, 1946_T|C,
1957_C|A, 1975_G|A, 1978_A|G, 1981_A|T, 1984_T|C, 1993_T|C, 2003_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T, 2080_A|T, 2083_T|C,
2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G, 2209_C|T, 2215_A|T,
2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A, 2308_A|G, 2314_C|T,
2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2470_C|A, 2488_G|A, 2497_C|T,
2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2605_A|G, 2611_G|A, 2623_A|G, 2626_T|C, 2632_T|C, 2641_T|G,
2644_G|A, 2687_T|C, 2698_C|T, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2729_C|T, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A, 2776_G|T, 2782_T|C, 2785_G|A,
2788_G|A, 2794_T|C, 2809_T|C, 2812_G|A, 2827_C|T, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2899_C|G, 2908_T|C, 2920_G|A, 2962_C|T, 2980_C|T, 2983_A|G, 2986_C|T, 2989_C|T, 2998_T|C,
3002_T|C, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|A, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3100_G|A, 3104_G|A, 3109_A|T, 3112_T|C, 3127_G|A, 3142_T|C,
3172_A|C, 3178_C|T, 3187_A|G, 3193_C|T, 3196_A|G, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G, 3280_G|A, 3283_A|G, 3298_G|A,
3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA, 3373_T|C, 3397_C|A, 3409_G|A,
3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3445_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A, 3502_T|G, 3505_A|G, 3514_A|G,
3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3566_G|A, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A, 3628_A|C, 3632_C|T, 3634_G|A,
3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G, 3718_C|T, 3733_GT|CC, 3739_T|C,
3745_C|T, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T, 3883_T|C, 3886_A|G, 3889_T|C, 3895_T|A,
3898_T|C, 3901_C|T, 3904_C|T, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3968_C|T, 3982_C|G, 3985_T|A, 4006_CG|AA, 4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T,
4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4089_T|A, 4103_C|T, 4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C,
4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_G|C, 4237_A|G, 4240_G|A, 4246_T|C, 4258_G|A, 4261_C|T, 4264_C|T, 4267_T|A,
4273_GA|AG, 4276_T|C, 4289_C|A, 4306_T|C, 4309_C|T, 4330_G|A, 4333_A|T, 4336_G|A, 4341_A|G, 4351_T|G, 4360_A|T, 4369_G|A, 4372_G|A, 4375_G|T, 4384_C|T, 4387_G|A, 4393_C|T, 4399_C|T,
4409_GCA|ATT, 4420_A|G, 4429_G|A, 4432_C|T, 4435_G|A, 4438_G|A, 4441_T|C, 4453_A|G, 4465_C|T, 4480_C|T, 4483_G|A, 4495_T|C, 4498_G|A, 4504_CC|TA, 4523_C|T, 4526_C|T, 4531_C|T, 4540_G|C,
4544_C|T, 4549_T|C, 4552_T|C, 4557_GG|AA, 4564_T|C, 4567_G|A, 4583_T|C, 4585_G|T, 4600_T|A, 4606_G|A, 4612_C|T, 4618_A|G, 4625_C|T, 4630_G|A, 4639_G|A, 4642_T|C, 4645_T|C, 4654_C|T, 4663_C|A,
4666_CT|TC, 4669_G|A, 4678_C|T, 4681_G|A, 4684_A|G, 4699_A|G, 4711_G|C, 4714_C|T, 4720_A|G, 4729_T|C, 4735_AA|GC, 4741_A|G, 4744_T|C, 4747_C|T, 4750_T|C, 4753_C|T, 4756_G|A, 4759_T|C,
4762_C|T, 4765_G|A, 4769_T|C, 4772_A|G, 4780_T|C, 4786_T|C, 4792_A|C, 4807_C|T, 4810_C|T, 4816_T|C, 4834_A|G, 4837_C|T, 4852_G|A, 4855_A|G, 4861_C|T, 4870_C|A, 4873_G|A, 4878_TT|CC, 4882_A|C,
4888_G|A, 4897_C|G, 4900_C|T, 4906_G|A, 4912_A|G, 4915_G|A, 4919_T|C, 4921_G|A, 4927_A|G, 4930_G|T, 4939_G|A, 4954_T|G, 4957_C|T, 4960_T|C, 4969_T|C, 4984_A|T, 4987_A|T, 4993_T|C, 4996_T|C,
4999_T|C, 5008_C|T, 5011_A|T, 5017_G|A, 5020_T|A, 5029_C|T, 5038_C|A, 5041_C|T, 5062_C|T, 5068_C|T, 5080_G|A, 5092_G|A, 5095_A|G, 5098_A|G, 5101_A|G, 5104_G|A, 5113_C|A, 5116_A|G, 5119_G|A,
5132_C|T, 5134_A|G, 5143_A|G, 5152_TG|CA, 5155_C|T, 5164_T|C, 5182_G|A, 5194_C|T, 5197_C|T, 5200_A|T, 5207_T|C, 5212_C|T, 5215_G|A, 5224_G|A, 5230_C|G, 5239_T|A, 5246_T|C, 5251_C|T, 5254_C|T,
5257_C|T, 5260_G|A, 5266_T|C, 5269_T|C, 5284_G|A, 5287_T|C, 5296_CC|TT, 5299_G|A, 5302_C|T, 5305_G|C, 5308_A|G, 5311_C|T, 5326_T|C, 5335_C|T, 5338_C|T, 5341_C|T, 5344_G|A, 5346_G|A, 5359_T|C,
5362_C|T, 5368_C|T, 5380_A|G, 5383_T|A, 5389_G|A, 5404_T|C, 5407_G|A, 5410_T|G, 5413_T|C, 5416_C|T, 5431_T|C, 5437_T|C, 5443_C|A, 5452_G|A, 5458_A|G, 5470_C|A, 5473_T|C, 5485_A|G, 5488_G|A,
5491_C|T, 5497_T|C, 5500_G|A, 5530_A|T, 5536_A|C, 5539_G|T, 5542_T|G, 5545_G|A, 5548_T|C, 5575_T|G, 5584_A|G, 5590_T|C, 5602_A|T, 5614_C|T, 5626_G|T, 5638_CC|TT, 5641_A|G, 5644_T|G, 5662_A|C,
5668_C|T, 5683_A|G, 5686_T|A, 5701_T|A, 5713_T|C, 5716_G|A, 5737_C|G, 5740_G|A, 5760_G|A, 5773_G|A, 5776_A|T, 5779_G|A, 5785_G|A, 5794_C|T, 5797_T|C, 5800_A|C, 5818_T|C, 5821_A|G, 5833_C|T,
5836_T|C, 5846_C|A, 5852_C|T, 5860_C|T, 5872_T|C, 5875_G|A, 5899_G|A, 5923_T|C, 5926_T|G, 5932_C|A, 5935_A|T, 5941_T|C, 5947_T|C, 5968_G|A, 5971_A|G, 5974_T|C, 5980_C|T, 5986_T|C, 5992_C|T,
6004_T|C, 6013_T|C, 6023_A|G, 6025_T|C, 6031_C|G, 6034_C|T, 6037_C|T, 6047_T|C, 6049_G|T, 6065_T|C, 6067_G|A, 6073_C|T, 6085_G|A, 6091_A|G, 6097_C|T, 6100_C|T, 6106_C|T, 6113_G|A, 6115_T|A,
6124_T|A, 6127_A|G, 6139_C|T, 6154_A|G, 6157_G|A, 6160_G|A, 6174_A|G, 6182_A|C, 6187_A|G, 6190_A|G, 6199_T|C, 6211_C|T, 6220_T|C, 6223_G|A, 6244_TT|AC, 6250_G|A, 6259_T|C, 6262_T|A, 6271_T|C,
6277_A|G, 6283_T|A, 6286_G|A, 6310_C|T, 6316_A|G, 6322_G|A, 6331_G|A, 6334_T|C, 6346_A|C, 6361_C|T, 6365_A|C, 6373_T|C, 6388_A|G, 6406_GT|TG, 6409_T|C, 6412_A|C, 6415_T|C, 6418_T|A, 6430_A|G,
6433_T|C, 6439_G|A, 6442_A|G, 6451_AG|GA, 6457_A|G, 6460_T|C, 6478_T|A, 6481_T|C, 6485_C|T, 6489_CT|TC, 6493_A|G, 6508_AA|GG, 6517_C|T, 6520_C|T, 6523_T|C, 6527_T|C, 6530_C|T, 6532_C|G,
6547_C|T, 6550_T|C, 6553_G|A, 6569_C|T, 6571_A|G, 6597_T|C, 6611_A|G, 6613_A|T, 6619_T|C, 6622_A|G, 6625_A|G, 6631_A|G, 6634_G|T, 6643_C|T, 6664_A|G, 6667_C|T, 6673_T|C, 6688_G|A, 6697_A|G,
6703_C|T, 6706_C|T, 6715_T|C, 6724_C|T, 6745_T|C, 6754_C|T, 6757_TG|CA, 6766_C|A, 6779_C|T, 6794_A|G, 6796_C|T, 6799_C|G, 6805_A|G, 6811_A|G, 6814_A|G, 6817_GT|AA, 6823_C|T, 6826_A|G,
6832_C|T, 6835_A|G, 6841_A|T, 6844_C|T, 6847_C|T, 6850_T|C, 6853_T|A, 6869_G|A, 6874_A|T, 6876_C|T, 6889_C|T, 6892_G|A, 6907_G|A, 6910_A|G, 6913_C|T, 6916_A|G, 6919_G|A, 6931_G|A, 6934_G|A,
6940_C|T, 6943_A|G, 6948_C|T, 6958_TT|CG, 6970_T|C, 6976_G|A, 6980_C|T, 6986_C|T, 6991_G|A, 7000_T|C, 7003_C|T, 7009_A|T, 7012_G|C, 7015_C|T, 7027_T|C, 7039_T|C, 7046_T|C, 7063_A|G, 7066_C|T,
7069_A|G, 7078_C|T, 7085_C|T, 7096_A|T, 7099_C|A, 7114_CC|TT, 7117_T|G, 7120_T|A, 7135_G|T, 7138_A|C, 7141_A|G, 7144_C|T, 7156_T|C, 7171_G|T, 7174_G|A, 7201_A|G, 7210_T|C, 7216_C|T, 7225_A|T,
7228_G|A, 7240_C|T, 7247_T|A, 7255_TT|CC, 7258_A|G, 7261_T|C, 7267_C|A, 7288_T|G, 7297_A|G, 7306_C|T, 7312_C|T, 7318_CG|TA, 7324_C|T, 7327_T|G, 7351_T|C, 7366_T|C, 7369_T|G, 7384_T|C,
7396_AC|GT, 7402_TC|AT, 7405_A|G, 7411_C|T, 7414_T|G, 7420_T|C, 7423_C|T, 7427_C|T, 7429_A|G, 7432_T|C, 7447_C|T, 7453_G|A, 7463_T|C, 7480_C|G, 7483_A|G, 7492_T|A, 7496_T|C, 7498_A|G,
7501_G|A, 7510_A|C, 7519_C|T, 7552_C|G, 7579_T|C, 7597_A|T, 7612_A|C, 7624_A|G, 7642_C|A, 7651_A|G, 7654_A|G, 7657_TT|CC, 7666_A|G, 7669_C|T, 7675_G|A, 7681_A|G, 7687_T|C, 7691_T|C, 7699_G|A,
7701_GA|AG, 7712_T|C, 7721_A|C, 7726_C|A, 7744_T|C, 7750_T|C, 7753_G|A, 7756_A|T, 7760_A|C, 7762_G|A, 7765_TT|CC, 7771_C|T, 7780_G|A, 7792_G|A, 7798_G|C, 7804_C|G, 7807_G|A, 7819_G|A,
7822_A|G, 7825_G|A, 7829_T|C, 7837_G|A, 7853_C|T, 7861_T|A, 7864_G|A, 7869_T|C, 7879_G|A, 7885_C|G, 7888_C|T, 7891_A|T, 7894_C|T, 7900_T|C, 7909_T|C, 7912_T|A, 7915_G|A, 7918_A|G, 7920_AG|GA,
7936_C|T, 7939_A|G, 7945_T|C, 7948_T|C, 7956_GA|AG, 7960_C|A, 7966_T|C, 7969_G|A, 7972_A|G, 7987_A|G, 7990_T|C, 7996_A|G, 8023_A|G, 8030_A|G, 8035_C|T, 8041_A|T, 8044_A|G, 8048_G|A, 8053_A|G,
8065_TT|GC, 8071_T|C, 8086_A|G, 8089_AT|CC, 8092_G|A, 8098_G|A, 8101_C|G, 8104_A|C, 8107_G|A, 8116_G|A, 8120_G|A, 8134_T|C, 8140_A|T, 8143_A|G, 8150_C|T, 8154_CT|GC, 8161_G|C, 8167_C|A,
8169_A|G, 8188_A|G, 8203_A|T, 8209_T|G, 8212_C|T, 8215_G|A, 8218_AC|GT, 8224_A|G, 8245_C|T, 8251_A|G, 8254_G|A, 8263_C|T, 8266_T|C, 8272_C|T, 8275_G|A, 8281_C|A, 8284_T|C, 8287_T|C, 8290_A|G,
8296_C|T, 8299_C|T, 8305_T|G, 8320_TG|CA, 8326_A|G, 8329_T|C, 8338_C|T, 8354_C|T, 8356_G|A, 8374_T|C, 8377_A|G, 8380_T|A, 8383_A|C, 8392_C|T, 8395_G|T, 8398_G|A, 8401_T|C, 8404_C|T, 8422_G|A,
8434_T|G, 8437_G|A, 8446_G|A, 8452_C|A, 8455_G|T, 8458_C|T, 8460_AA|GG, 8463_AG|CA, 8470_A|T, 8476_A|G, 8485_G|A, 8488_G|A, 8500_G|A, 8505_TGA|CCG, 8510_T|A, 8518_TT|CC, 8524_C|T, 8526_A|G,
8536_C|T, 8539_C|T, 8545_C|T, 8551_C|T, 8554_C|T, 8560_C|T, 8566_T|C, 8574_A|G, 8584_A|G, 8590_G|A, 8593_G|A, 8600_G|A, 8602_A|T, 8605_T|C, 8608_T|G, 8611_T|G, 8614_T|C, 8617_A|G, 8620_TC|CT,
8629_T|C, 8632_A|C, 8650_G|A, 8656_A|G, 8671_T|A, 8680_C|T, 8692_G|A, 8704_T|C, 8707_A|G, 8743_G|A, 8746_A|G, 8749_T|C, 8755_G|A, 8758_C|T, 8764_A|G, 8782_G|A, 8788_C|T, 8792_C|T, 8815_AC|GT,
8830_A|G, 8833_A|G, 8839_T|A, 8848_C|T, 8851_A|C, 8866_T|C, 8874_A|T, 8884_A|G, 8911_G|A, 8923_C|T, 8926_A|G, 8939_C|T, 8941_G|A, 8954_A|C, 8956_GAA|ACG, 8965_C|T, 8968_A|G, 8971_A|G,
8980_T|C, 8983_G|A, 9009_9010, 9017_.|AA, 9037_G|A, 9040_A|G, 9043_A|G, 9061_A|C, 9067_T|C, 9082_G|C, 9085_G|A, 9100_G|A, 9127_T|C, 9133_T|A, 9142_A|G, 9151_A|G, 9157_A|G, 9160_G|T, 9166_C|T,
9172_CT|TC, 9181_C|T, 9187_A|C, 9190_T|C, 9199_A|G, 9212_A|C, 9214_G|A, 9217_T|G, 9232_C|T, 9244_C|A, 9259_G|A, 9265_C|A, 9274_A|G, 9277_C|T, 9280_T|G, 9295_G|A, 9319_T|C, 9322_C|T,
9324_AA|GG, 9328_AC|GT, 9334_A|G, 9336_A|T, 9340_A|T, 9343_G|A, 9361_G|A, 9379_GT|CC, 9385_A|G, 9391_C|T, 9397_A|T, 9406_C|T, 9424_T|C, 9427_A|G, 9430_A|G, 9454_A|G, 9463_T|C, 9466_TC|CT,
9485_T|C, 9490_A|G, 9493_C|T, 9497_T|C, 9502_C|T, 9505_A|G, 9514_A|G, 9532_T|C, 9538_A|G, 9544_T|C, 9547_A|G, 9550_T|C, 9556_T|C, 9559_AT|CA, 9562_A|G, 9566_C|T, 9573_G|A, 9577_G|T, 9580_G|A,
9590_A|G, 9598_C|T, 9601_A|C, 9604_T|C, 9610_A|G, 9613_G|T, 9625_G|A, 9637_C|T, 9646_G|T, 9652_G|A, 9658_C|T, 9670_C|T, 9679_C|T, 9691_C|T, 9694_C|T, 9703_C|A, 9709_TA|GC, 9715_G|A, 9745_G|A,
9749_A|G, 9754_T|C, 9762_A|G, 9775_T|C, 9778_C|T, 9787_C|T, 9796_A|G, 9799_G|A, 9817_G|A, 9823_G|A, 9835_A|G, 9838_A|T, 9841_G|A, 9844_C|T, 9850_CA|GG, 9856_G|C, 9862_A|G, 9865_G|A, 9880_C|T,
9883_C|T, 9898_A|G, 9904_T|A, 9910_C|T, 9916_A|G, 9919_C|T, 9922_T|C, 9946_T|C, 9955_A|G, 9970_A|G, 9973_G|T, 9977_T|C, 9988_C|T, 9991_A|T, 10003_C|A, 10006_A|T, 10018_A|G, 10027_A|C,
10030_A|G, 10036_GA|TG, 10066_G|A, 10096_A|G, 10111_C|T, 10126_C|T, 10129_G|A, 10132_A|G, 10134_T|C, 10141_AA|GG, 10153_TG|CA, 10162_T|C, 10165_A|G, 10177_A|G, 10186_G|T, 10189_C|T,
10204_A|G, 10213_T|C, 10216_G|A, 10222_C|T, 10228_C|A, 10231_C|T, 10240_T|C, 10243_A|G, 10246_C|A, 10249_C|A, 10252_T|C, 10255_T|C, 10261_A|G, 10264_G|A, 10273_AC|GA, 10276_G|A, 10281_A|G,
10297_A|G, 10309_C|T, 10315_T|C, 10330_C|T, 10336_A|G, 10338_TG|CC, 10348_T|C, 10351_C|T, 10355_A|G, 10361_A|G, 10364_T|C, 10367_C|G, 10369_GG|AC, 10374_A|C
Case 3 (A.1): PV710604.1
| Target: 835 samples | Number of changes: 1406 | |
| BC: A.1.NmC1 + A.1 | BC BR: 53-54 | BC BR coord: 552 - 553 |
| Direction L1: >> | Initial region span: 1-34,1403-1406 | Gap history (edge excluded): 34-1403 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 1.09e+18 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
34 |
2.30746 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
835 |
1403 |
2.087133 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 116_A|C, 119_A|C, 166_A|T, 178_T|C, 192_A|G, 225_AC|GT, 247_T|C, 260_A|G, 262_C|T, 281_A|G, 295_A|G, 301_C|T, 304_A|C, 307_C|T, 310_C|T, 313_A|G, 318_GGT|AAC, 322_G|A, 327_A|G, 346_A|G,
352_G|A, 354_C|T, 358_T|C, 361_A|G, 367_A|G, 370_C|T, 376_A|G, 385_C|G, 389_T|C, 400_A|T, 409_A|G, 421_T|A, 427_T|A, 434_C|T, 436_G|A, 440_G|A, 442_G|A, 448_CC|TT, 451_A|G, 455_T|C, 467_T|C,
473_ACG|GTT, 488_T|C, 493_G|A, 496_G|C, 498_A|G, 511_G|A, 514_C|T, 517_A|G, 523_G|T, 538_C|T, 547_A|C, 551_T|C, 556_G|T, 577_A|C, 584_T|C, 589_A|G, 595_G|A, 598_C|T, 604_C|T, 610_C|T,
613_A|C, 628_T|C, 649_G|A, 655_A|T, 664_T|A, 667_T|C, 670_C|T, 682_G|A, 691_C|T, 694_T|C, 703_A|T, 709_T|C, 718_C|T, 724_A|G, 727_C|T, 733_T|A, 736_G|A, 742_A|C, 760_G|A, 763_T|C, 766_G|A,
769_T|C, 775_C|T, 781_T|C, 784_G|A, 802_A|G, 823_T|C, 826_A|G, 829_G|A, 832_A|G, 835_C|G, 838_A|G, 841_G|A, 847_G|A, 854_T|C, 856_C|G, 871_T|C, 877_A|G, 879_TG|CA, 883_G|A, 887_C|T, 890_A|G,
904_T|G, 910_A|G, 931_C|T, 934_G|C, 937_T|C, 943_A|G, 946_G|A, 961_T|C, 964_G|A, 970_C|T, 973_A|G, 985_T|A, 991_T|A, 994_T|C, 1024_A|G, 1030_T|C, 1042_T|C, 1046_C|T, 1051_G|A, 1054_A|G,
1072_T|G, 1081_T|C, 1094_T|C, 1096_G|A, 1102_C|A, 1111_G|A, 1117_A|T, 1127_A|G, 1140_TG|CA, 1147_A|G, 1153_T|C, 1158_A|G, 1165_TC|CT, 1168_C|G, 1171_TC|CA, 1174_T|C, 1195_C|T, 1207_A|T,
1210_G|A, 1217_C|T, 1219_A|G, 1221_CT|AA, 1228_G|A, 1231_C|T, 1237_G|A, 1246_G|T, 1255_C|A, 1261_T|C, 1264_T|C, 1273_C|T, 1279_C|A, 1285_C|T, 1292_C|T, 1294_A|G, 1300_G|A, 1306_G|A, 1321_C|T,
1327_A|G, 1330_C|T, 1333_T|C, 1339_C|T, 1352_T|C, 1354_G|A, 1390_C|T, 1393_A|G, 1399_AT|GC, 1402_G|A, 1408_A|C, 1411_G|A, 1423_A|G, 1432_T|C, 1435_C|T, 1441_T|C, 1444_G|A, 1474_C|T,
1482_TC|CT, 1491_T|C, 1495_G|A, 1498_T|C, 1501_A|G, 1503_AA|GG, 1507_T|C, 1516_A|G, 1525_G|A, 1528_A|G, 1531_T|C, 1534_G|A, 1543_TG|CA, 1558_C|T, 1561_T|A, 1570_A|G, 1572_C|A, 1585_A|T,
1591_C|T, 1593_G|A, 1606_G|A, 1610_T|C, 1618_G|A, 1621_A|T, 1642_G|C, 1666_T|C, 1669_C|G, 1678_A|G, 1684_G|A, 1690_C|T, 1693_C|A, 1696_T|C, 1701_G|A, 1705_AC|GT, 1708_G|A, 1714_G|T, 1723_G|A,
1729_C|A, 1738_A|G, 1741_A|T, 1747_T|C, 1753_C|T, 1760_A|C, 1762_G|A, 1765_T|C, 1771_G|A, 1780_TG|CA, 1785_A|G, 1789_C|G, 1792_T|G, 1795_C|T, 1798_A|G, 1801_A|G, 1807_T|G, 1810_A|G, 1813_T|C,
1816_TT|CG, 1819_T|G, 1822_C|T, 1825_A|G, 1831_A|G, 1841_T|C, 1843_G|C, 1849_C|T, 1855_G|A, 1867_A|G, 1870_A|G, 1873_C|T, 1876_T|C, 1887_T|C, 1894_C|T, 1915_C|A, 1926_TT|CA, 1936_G|A,
1942_A|G, 1946_T|C, 1957_C|A, 1975_G|A, 1978_A|G, 1981_A|T, 1984_T|C, 1993_T|C, 2003_A|G, 2017_T|C, 2023_T|C, 2029_T|C, 2032_C|T, 2035_C|A, 2038_C|A, 2044_A|C, 2063_C|T, 2068_T|C, 2077_C|T,
2080_A|T, 2083_T|C, 2089_A|G, 2092_C|T, 2095_C|T, 2101_T|C, 2104_C|A, 2112_G|C, 2116_A|G, 2125_T|C, 2128_C|G, 2146_A|G, 2149_G|A, 2152_A|C, 2164_A|G, 2173_C|T, 2188_A|G, 2193_TG|CA, 2197_A|G,
2209_C|T, 2215_A|T, 2218_CA|TG, 2221_C|T, 2230_T|C, 2233_CA|TG, 2236_C|T, 2239_C|T, 2248_G|A, 2257_T|A, 2260_G|A, 2272_A|C, 2275_T|A, 2278_T|C, 2281_G|T, 2299_T|C, 2302_G|A, 2305_G|A,
2308_A|G, 2314_C|T, 2322_A|G, 2349_CG|TA, 2353_A|C, 2356_T|C, 2371_C|T, 2380_A|G, 2383_C|T, 2408_T|C, 2410_G|A, 2413_A|T, 2419_G|C, 2431_TT|CC, 2437_T|C, 2455_T|C, 2464_C|T, 2470_C|A,
2488_G|A, 2497_C|T, 2506_T|C, 2513_A|G, 2515_A|C, 2524_C|T, 2527_T|A, 2548_C|T, 2563_A|G, 2566_T|C, 2569_T|A, 2572_G|A, 2575_G|A, 2581_A|T, 2596_C|T, 2599_T|C, 2605_A|G, 2611_G|A, 2623_A|G,
2626_T|C, 2632_T|C, 2641_T|G, 2644_G|A, 2687_T|C, 2698_C|T, 2710_T|C, 2713_T|A, 2716_T|G, 2719_C|G, 2722_G|C, 2725_G|A, 2729_C|T, 2737_TG|CA, 2743_C|T, 2752_A|G, 2755_T|A, 2761_A|G, 2773_T|A,
2776_G|T, 2782_T|C, 2785_G|A, 2788_G|A, 2794_T|C, 2809_T|C, 2812_G|A, 2827_C|T, 2833_G|A, 2836_G|A, 2863_A|G, 2878_A|G, 2881_C|T, 2899_C|G, 2908_T|C, 2920_G|A, 2962_C|T, 2980_C|T, 2983_A|G,
2986_C|T, 2989_C|T, 2998_T|C, 3002_T|C, 3019_C|T, 3025_A|G, 3031_T|C, 3034_C|A, 3040_C|G, 3043_T|C, 3052_T|C, 3064_T|C, 3073_A|G, 3079_G|A, 3091_C|T, 3094_C|T, 3100_G|A, 3104_G|A, 3109_A|T,
3112_T|C, 3127_G|A, 3142_T|C, 3172_A|C, 3178_C|T, 3187_A|G, 3193_C|T, 3196_A|G, 3211_T|C, 3217_T|C, 3220_T|C, 3223_C|T, 3226_T|G, 3232_C|T, 3238_T|C, 3244_G|A, 3253_T|C, 3265_A|G, 3274_A|G,
3280_G|A, 3283_A|G, 3298_G|A, 3301_T|C, 3304_C|T, 3308_A|G, 3310_CA|TG, 3316_T|C, 3319_CAA|AGG, 3331_A|G, 3334_G|T, 3337_A|G, 3340_A|G, 3343_A|G, 3352_C|G, 3358_G|T, 3361_T|C, 3370_AG|GA,
3373_T|C, 3397_C|A, 3409_G|A, 3412_T|A, 3424_T|C, 3427_T|G, 3436_G|T, 3439_T|C, 3445_T|C, 3448_C|T, 3454_A|G, 3460_G|A, 3465_G|A, 3469_A|G, 3472_G|A, 3478_A|C, 3484_T|C, 3490_G|C, 3496_C|A,
3502_T|G, 3505_A|G, 3514_A|G, 3517_A|C, 3523_TG|AA, 3529_T|C, 3535_T|G, 3556_A|C, 3566_G|A, 3568_CC|AT, 3571_A|G, 3577_A|G, 3589_A|C, 3598_GT|AC, 3610_AG|CA, 3613_A|G, 3619_CT|TC, 3622_G|A,
3628_A|C, 3632_C|T, 3634_G|A, 3637_C|T, 3640_G|A, 3643_A|G, 3646_A|G, 3650_C|A, 3653_C|T, 3655_T|G, 3658_T|C, 3667_A|G, 3679_T|G, 3682_G|T, 3686_T|C, 3691_T|C, 3694_C|T, 3706_C|T, 3715_A|G,
3718_C|T, 3733_GT|CC, 3739_T|C, 3745_C|T, 3781_GC|AT, 3784_C|G, 3790_C|G, 3793_A|G, 3802_T|C, 3805_G|A, 3814_T|C, 3826_A|G, 3829_A|G, 3832_A|C, 3850_C|T, 3860_G|A, 3868_C|A, 3871_C|T,
3883_T|C, 3886_A|G, 3889_T|C, 3895_T|A, 3898_T|C, 3901_C|T, 3904_C|T, 3928_T|C, 3931_T|C, 3934_G|A, 3947_AC|GT, 3953_T|C, 3959_C|T, 3961_C|G, 3968_C|T, 3982_C|G, 3985_T|A, 4006_CG|AA,
4013_T|C, 4018_T|C, 4021_TG|CA, 4024_C|T, 4030_T|C, 4036_A|C, 4039_G|C, 4042_C|T, 4045_T|C, 4048_C|T, 4054_T|C, 4056_TC|CA, 4066_C|T, 4081_T|C, 4087_T|C, 4089_T|A, 4099_C|T, 4103_C|T,
4120_CT|AC, 4126_A|G, 4129_A|G, 4132_T|C, 4135_T|C, 4142_C|T, 4150_A|C, 4153_TC|CA, 4165_C|A, 4171_T|C, 4183_T|C, 4198_G|A, 4201_A|G, 4204_C|T, 4210_A|T, 4219_A|C, 4228_G|C, 4237_A|G,
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